Wall clock time and date at job start Tue Mar 31 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34252 * 126.52478 * 2 1 4 4 C 1.34054 * 108.22471 * 179.97438 * 3 2 1 5 5 N 1.29936 * 109.24429 * 0.02562 * 4 3 2 6 6 C 1.36070 * 108.47282 * 0.02562 * 5 4 3 7 7 C 1.47422 * 126.44271 * 179.97438 * 6 5 4 8 8 O 1.21610 * 119.99840 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00410 * 0.02562 * 7 6 5 10 10 C 1.46492 * 120.00334 * 179.97438 * 9 7 6 11 11 H 1.09006 * 112.84924 * 25.33894 * 10 9 7 12 12 C 1.53783 * 113.61388 * 156.52590 * 10 9 7 13 13 C 1.53784 * 87.08048 * 139.98640 * 12 10 9 14 14 H 1.09002 * 113.61701 * 219.93923 * 13 12 10 15 15 N 1.46492 * 113.61551 * 89.11772 * 13 12 10 16 16 C 1.34781 * 120.00296 * 155.00428 * 15 13 12 17 17 O 1.21285 * 119.99616 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00222 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.46943 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99726 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99932 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99811 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00096 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00006 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47343 * 90.00114 * 24 22 20 26 26 H 1.48499 * 109.47135 * 210.00124 * 24 22 20 27 27 H 1.48500 * 109.47251 * 330.00044 * 24 22 20 28 28 C 1.53778 * 113.61802 * 254.13562 * 10 9 7 29 29 H 1.09003 * 109.46864 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47751 * 120.02091 * 1 2 3 31 31 H 1.09006 * 109.46889 * 240.02357 * 1 2 3 32 32 H 1.08001 * 125.37641 * 180.02562 * 4 3 2 33 33 H 0.97010 * 119.99522 * 359.97438 * 9 7 6 34 34 H 1.08999 * 113.61688 * 254.53352 * 12 10 9 35 35 H 1.09004 * 113.61446 * 25.43911 * 12 10 9 36 36 H 0.96999 * 120.00452 * 335.00200 * 15 13 12 37 37 H 1.09000 * 109.46595 * 299.99258 * 18 16 15 38 38 H 1.09001 * 109.47465 * 59.99771 * 18 16 15 39 39 H 0.96996 * 120.00438 * 180.02562 * 23 22 20 40 40 H 1.08995 * 113.61304 * 334.56881 * 28 10 9 41 41 H 1.09003 * 113.61358 * 105.47461 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5788 0.6579 0.0006 5 7 3.6002 -0.6413 0.0004 6 6 2.3169 -1.0936 -0.0009 7 6 1.8852 -2.5032 -0.0021 8 8 0.7002 -2.7762 -0.0037 9 7 2.8039 -3.4894 -0.0014 10 6 2.3750 -4.8901 -0.0020 11 1 1.3833 -5.0289 -0.4328 12 6 3.4309 -5.8575 -0.5625 13 6 3.0234 -6.8276 0.5591 14 1 3.8659 -7.3505 1.0116 15 7 1.9285 -7.7272 0.1878 16 6 1.7917 -8.9149 0.8100 17 8 2.5754 -9.2390 1.6771 18 6 0.6657 -9.8406 0.4276 19 16 0.7516 -11.3428 1.4338 20 6 -0.6386 -12.2178 0.7964 21 1 -1.2396 -11.7799 0.0132 22 6 -0.9608 -13.4704 1.3001 23 7 -1.9990 -14.1244 0.8236 24 14 0.0800 -14.2288 2.6533 25 1 -0.4629 -13.8311 3.9771 26 1 0.0502 -15.7084 2.5303 27 1 1.4800 -13.7498 2.5283 28 6 2.5616 -5.5922 1.3534 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5141 -0.8898 31 1 -0.3633 -0.5135 0.8903 32 1 4.4489 1.2977 0.0011 33 1 3.7492 -3.2716 -0.0005 34 1 3.1999 -6.2244 -1.5625 35 1 4.4527 -5.4891 -0.4713 36 1 1.3019 -7.4682 -0.5059 37 1 -0.2884 -9.3422 0.5990 38 1 0.7540 -10.1042 -0.6263 39 1 -2.2244 -14.9996 1.1759 40 1 3.3453 -5.1511 1.9693 41 1 1.6298 -5.7453 1.8977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353552764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:57 Heat of formation + Delta-G solvation = -30.319701 kcal Electronic energy + Delta-G solvation = -25397.875124 eV Core-core repulsion = 21406.570354 eV Total energy + Delta-G solvation = -3991.304770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.95514 -40.63639 -39.39512 -37.97042 -35.38751 -34.28167 -32.90044 -32.50361 -32.41390 -29.24914 -27.99955 -26.04786 -25.64219 -25.29939 -23.69520 -22.30621 -21.15336 -20.81532 -19.78617 -18.58232 -17.87296 -17.41407 -17.03768 -16.63546 -16.17516 -16.05402 -15.33222 -15.17493 -15.04533 -14.96143 -14.61566 -14.23704 -13.99619 -13.69613 -13.52556 -13.28567 -13.02648 -12.95196 -12.83040 -12.78435 -12.38357 -12.03037 -11.87730 -11.33650 -11.25783 -11.11891 -10.99815 -10.85437 -10.61191 -10.45177 -9.85131 -9.55880 -9.54156 -9.28656 -9.01122 -8.95986 -8.49519 -6.90923 -6.27789 -3.99608 0.60342 1.53119 2.03621 2.73623 2.75016 2.87441 2.92996 3.27948 3.34600 3.51336 3.52255 3.64013 4.09956 4.11544 4.28611 4.34090 4.36472 4.63561 4.64256 4.71208 4.75920 4.90387 5.02531 5.11239 5.22567 5.31454 5.31943 5.34841 5.50389 5.50697 5.58211 5.62565 5.76937 5.80126 5.86134 6.02621 6.13139 6.57183 6.84051 7.18723 7.57894 7.78943 7.95245 8.43004 8.46728 9.18313 10.81419 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.001753 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.826001 B =15965.574513 C =16531.832388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.047 3.953 3 O -0.199 6.199 4 C 0.175 3.825 5 N -0.464 5.464 6 C -0.083 4.083 7 C 0.603 3.397 8 O -0.531 6.531 9 N -0.702 5.702 10 C 0.121 3.879 11 H 0.117 0.883 12 C -0.152 4.152 13 C 0.129 3.871 14 H 0.110 0.890 15 N -0.720 5.720 16 C 0.535 3.465 17 O -0.517 6.517 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C -0.164 4.164 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.409 0.591 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.401 0.599 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.093 0.907 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.464 32.907 -4.682 35.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.009 4.009 3 O -0.086 6.086 4 C -0.053 4.053 5 N -0.193 5.193 6 C -0.203 4.203 7 C 0.389 3.611 8 O -0.408 6.408 9 N -0.352 5.352 10 C 0.017 3.983 11 H 0.135 0.865 12 C -0.191 4.191 13 C 0.022 3.978 14 H 0.128 0.872 15 N -0.374 5.374 16 C 0.321 3.679 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 C -0.204 4.204 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.271 0.729 33 H 0.245 0.755 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.235 0.765 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.342 31.609 -3.238 34.087 hybrid contribution -0.849 0.694 -0.807 1.361 sum 11.493 32.303 -4.045 34.525 Atomic orbital electron populations 1.20508 0.82359 1.04087 1.05774 1.23820 0.95332 0.83343 0.98428 1.84402 1.18610 1.36238 1.69320 1.28021 0.85298 0.91174 1.00856 1.70719 1.21682 1.10264 1.16645 1.21496 0.88911 0.95616 1.14260 1.16738 0.85604 0.82616 0.76183 1.90834 1.16218 1.83297 1.50414 1.45764 1.10037 1.05488 1.73928 1.22741 0.99699 0.78314 0.97594 0.86477 1.23742 0.99837 0.95743 0.99743 1.21578 0.91211 0.89397 0.95630 0.87183 1.45685 1.31476 1.18382 1.41839 1.20308 0.85696 0.80897 0.81015 1.90699 1.43669 1.74214 1.30536 1.23286 0.99292 0.99779 1.05175 1.84784 1.41513 1.13603 1.51622 1.22321 1.12975 1.05656 1.25952 0.89354 1.24715 0.94603 0.95725 0.96282 1.69937 1.25856 1.13996 1.41883 0.86732 0.83262 0.79282 0.82553 1.19213 1.19953 1.15927 1.23992 1.03228 0.96128 0.97054 0.90137 0.88052 0.88026 0.72864 0.75509 0.89796 0.88204 0.76482 0.88370 0.88347 0.91949 0.88872 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 9.13 36.01 0.33 -0.08 16 2 C 0.05 0.37 7.44 -35.08 -0.26 0.11 16 3 O -0.20 -1.31 10.73 6.51 0.07 -1.24 16 4 C 0.18 0.88 13.19 51.96 0.69 1.57 16 5 N -0.46 -3.70 11.06 -11.48 -0.13 -3.83 16 6 C -0.08 -0.77 6.99 -83.02 -0.58 -1.35 16 7 C 0.60 6.36 7.81 -12.52 -0.10 6.26 16 8 O -0.53 -6.81 15.23 5.27 0.08 -6.73 16 9 N -0.70 -6.04 5.36 -54.09 -0.29 -6.33 16 10 C 0.12 1.05 4.09 -67.12 -0.27 0.78 16 11 H 0.12 1.14 7.50 -51.93 -0.39 0.75 16 12 C -0.15 -1.11 7.58 -25.92 -0.20 -1.31 16 13 C 0.13 1.35 4.33 -67.03 -0.29 1.06 16 14 H 0.11 1.33 7.46 -51.93 -0.39 0.94 16 15 N -0.72 -8.85 5.26 -52.93 -0.28 -9.13 16 16 C 0.53 9.31 7.85 -10.98 -0.09 9.22 16 17 O -0.52 -10.96 15.46 5.55 0.09 -10.88 16 18 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 19 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 20 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 24 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 C -0.16 -1.61 7.69 -25.83 -0.20 -1.81 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.26 -0.06 8.06 -52.49 -0.42 -0.48 16 33 H 0.41 2.93 8.44 -40.82 -0.34 2.58 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.40 3.89 8.70 -40.82 -0.36 3.54 16 37 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 38 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -37.28 371.71 -6.60 -43.88 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.27 Total: 2.73 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.53 Total: 0.22 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.08 Total: -45.15 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.24 Total: -18.85 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.28 -6.60 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353552764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.563 kcal (2) G-P(sol) polarization free energy of solvation -37.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds