Wall clock time and date at job start Tue Mar 31 2020 22:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34252 * 126.52478 * 2 1 4 4 C 1.34054 * 108.22471 * 179.97438 * 3 2 1 5 5 N 1.29936 * 109.24429 * 0.02562 * 4 3 2 6 6 C 1.36070 * 108.47282 * 0.02562 * 5 4 3 7 7 C 1.47422 * 126.44271 * 179.97438 * 6 5 4 8 8 O 1.21610 * 119.99840 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00410 * 0.02562 * 7 6 5 10 10 C 1.46492 * 120.00334 * 179.97438 * 9 7 6 11 11 H 1.09006 * 112.84924 * 25.33894 * 10 9 7 12 12 C 1.53783 * 113.61388 * 156.52590 * 10 9 7 13 13 C 1.53784 * 87.08048 * 139.98640 * 12 10 9 14 14 H 1.09002 * 113.61701 * 219.93923 * 13 12 10 15 15 N 1.46492 * 113.61551 * 89.11772 * 13 12 10 16 16 C 1.34781 * 120.00296 * 155.00428 * 15 13 12 17 17 O 1.21285 * 119.99616 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00222 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.46943 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99726 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99932 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99811 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00096 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00006 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47343 * 90.00114 * 24 22 20 26 26 H 1.48499 * 109.47135 * 210.00124 * 24 22 20 27 27 H 1.48500 * 109.47251 * 330.00044 * 24 22 20 28 28 C 1.53778 * 113.61802 * 254.13562 * 10 9 7 29 29 H 1.09003 * 109.46864 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47751 * 120.02091 * 1 2 3 31 31 H 1.09006 * 109.46889 * 240.02357 * 1 2 3 32 32 H 1.08001 * 125.37641 * 180.02562 * 4 3 2 33 33 H 0.97010 * 119.99522 * 359.97438 * 9 7 6 34 34 H 1.08999 * 113.61688 * 254.53352 * 12 10 9 35 35 H 1.09004 * 113.61446 * 25.43911 * 12 10 9 36 36 H 0.96999 * 120.00452 * 335.00200 * 15 13 12 37 37 H 1.09000 * 109.46595 * 299.99258 * 18 16 15 38 38 H 1.09001 * 109.47465 * 59.99771 * 18 16 15 39 39 H 0.96996 * 120.00438 * 180.02562 * 23 22 20 40 40 H 1.08995 * 113.61304 * 334.56881 * 28 10 9 41 41 H 1.09003 * 113.61358 * 105.47461 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5788 0.6579 0.0006 5 7 3.6002 -0.6413 0.0004 6 6 2.3169 -1.0936 -0.0009 7 6 1.8852 -2.5032 -0.0021 8 8 0.7002 -2.7762 -0.0037 9 7 2.8039 -3.4894 -0.0014 10 6 2.3750 -4.8901 -0.0020 11 1 1.3833 -5.0289 -0.4328 12 6 3.4309 -5.8575 -0.5625 13 6 3.0234 -6.8276 0.5591 14 1 3.8659 -7.3505 1.0116 15 7 1.9285 -7.7272 0.1878 16 6 1.7917 -8.9149 0.8100 17 8 2.5754 -9.2390 1.6771 18 6 0.6657 -9.8406 0.4276 19 16 0.7516 -11.3428 1.4338 20 6 -0.6386 -12.2178 0.7964 21 1 -1.2396 -11.7799 0.0132 22 6 -0.9608 -13.4704 1.3001 23 7 -1.9990 -14.1244 0.8236 24 14 0.0800 -14.2288 2.6533 25 1 -0.4629 -13.8311 3.9771 26 1 0.0502 -15.7084 2.5303 27 1 1.4800 -13.7498 2.5283 28 6 2.5616 -5.5922 1.3534 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5141 -0.8898 31 1 -0.3633 -0.5135 0.8903 32 1 4.4489 1.2977 0.0011 33 1 3.7492 -3.2716 -0.0005 34 1 3.1999 -6.2244 -1.5625 35 1 4.4527 -5.4891 -0.4713 36 1 1.3019 -7.4682 -0.5059 37 1 -0.2884 -9.3422 0.5990 38 1 0.7540 -10.1042 -0.6263 39 1 -2.2244 -14.9996 1.1759 40 1 3.3453 -5.1511 1.9693 41 1 1.6298 -5.7453 1.8977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353552764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:56 Heat of formation + Delta-G solvation = -61.315663 kcal Electronic energy + Delta-G solvation = -25399.219210 eV Core-core repulsion = 21406.570354 eV Total energy + Delta-G solvation = -3992.648856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.45224 -41.53901 -40.44533 -39.03087 -35.94731 -35.22844 -34.67052 -33.55048 -33.40514 -30.68675 -28.55893 -27.85953 -26.77869 -26.05010 -24.35584 -22.87089 -22.28481 -21.57841 -20.69301 -19.90200 -19.17321 -18.18502 -17.92769 -17.41716 -17.21470 -17.06979 -17.00047 -16.46041 -16.01138 -15.84833 -15.70981 -15.37499 -15.06513 -14.83446 -14.53828 -14.47402 -14.09973 -13.97563 -13.52743 -13.43079 -13.36650 -13.33368 -13.20137 -13.00986 -12.60348 -12.45005 -11.94889 -11.87357 -11.85659 -11.66672 -11.25747 -11.17003 -11.02251 -10.54035 -10.27324 -10.10071 -9.85500 -8.99440 -8.51336 -6.22240 0.02178 0.98485 1.03046 1.31760 1.46697 1.52934 1.55609 1.57007 2.09236 2.17753 2.18763 2.25836 2.71235 2.86806 3.09223 3.36078 3.52659 3.62128 3.78221 3.81045 3.87767 4.00934 4.21417 4.23921 4.39649 4.47080 4.55175 4.56206 4.69454 4.76586 4.86224 4.86640 4.95808 4.99111 5.07274 5.17080 5.35430 5.58050 5.70865 6.11698 6.26564 6.43558 6.57347 6.93682 7.06599 7.17345 8.61049 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.001753 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.826001 B =15965.574513 C =16531.832388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.042 3.958 3 O -0.200 6.200 4 C 0.195 3.805 5 N -0.491 5.491 6 C -0.108 4.108 7 C 0.597 3.403 8 O -0.563 6.563 9 N -0.692 5.692 10 C 0.124 3.876 11 H 0.107 0.893 12 C -0.127 4.127 13 C 0.118 3.882 14 H 0.098 0.902 15 N -0.697 5.697 16 C 0.540 3.460 17 O -0.559 6.559 18 C -0.113 4.113 19 S -0.174 6.174 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.236 1.236 28 C -0.161 4.161 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.304 0.696 33 H 0.418 0.582 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.416 0.584 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.104 0.896 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.418 35.192 -5.055 38.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.015 4.015 3 O -0.087 6.087 4 C -0.034 4.034 5 N -0.219 5.219 6 C -0.227 4.227 7 C 0.384 3.616 8 O -0.442 6.442 9 N -0.342 5.342 10 C 0.019 3.981 11 H 0.125 0.875 12 C -0.166 4.166 13 C 0.012 3.988 14 H 0.116 0.884 15 N -0.350 5.350 16 C 0.326 3.674 17 O -0.437 6.437 18 C -0.264 4.264 19 S 0.053 5.947 20 C -0.678 4.678 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.160 1.160 28 C -0.201 4.201 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.318 0.682 33 H 0.255 0.745 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.253 0.747 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.310 33.926 -3.651 37.001 hybrid contribution -1.431 0.205 -0.766 1.635 sum 12.879 34.130 -4.417 36.746 Atomic orbital electron populations 1.20527 0.81529 1.05370 1.05138 1.24084 0.96086 0.83398 0.97946 1.84433 1.19176 1.35763 1.69336 1.29174 0.85765 0.90926 0.97499 1.70696 1.21027 1.11758 1.18449 1.21437 0.90025 0.95249 1.15972 1.17012 0.85387 0.83523 0.75696 1.90808 1.17454 1.83917 1.52049 1.45680 1.10273 1.05099 1.73141 1.22651 0.99923 0.78678 0.96867 0.87484 1.23662 1.00594 0.93267 0.99035 1.21752 0.90143 0.89241 0.97702 0.88393 1.45456 1.31906 1.16784 1.40890 1.19929 0.84682 0.81929 0.80884 1.90688 1.45023 1.75405 1.32589 1.23284 1.01056 0.97260 1.04800 1.84684 1.39745 1.16891 1.53419 1.22472 1.13832 1.06180 1.25269 0.91984 1.25579 0.95729 0.96284 0.98464 1.70016 1.27346 1.14732 1.43379 0.85856 0.81532 0.79165 0.79744 1.18774 1.18291 1.15978 1.23980 1.02549 0.96021 0.97574 0.87872 0.88513 0.88772 0.68161 0.74495 0.88491 0.85769 0.74693 0.87026 0.86582 0.91372 0.87730 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 9.13 71.24 0.65 -0.13 16 2 C 0.04 0.62 7.44 25.19 0.19 0.81 16 3 O -0.20 -2.22 10.73 0.39 0.00 -2.22 16 4 C 0.19 1.42 13.19 130.52 1.72 3.14 16 5 N -0.49 -6.93 11.06 -305.14 -3.37 -10.30 16 6 C -0.11 -1.93 6.99 40.41 0.28 -1.65 16 7 C 0.60 12.37 7.81 86.66 0.68 13.04 16 8 O -0.56 -14.63 15.23 -4.06 -0.06 -14.69 16 9 N -0.69 -11.01 5.36 -443.31 -2.38 -13.38 16 10 C 0.12 1.96 4.09 45.52 0.19 2.14 16 11 H 0.11 1.98 7.50 -2.38 -0.02 1.96 16 12 C -0.13 -1.51 7.58 31.12 0.24 -1.28 16 13 C 0.12 2.28 4.33 45.58 0.20 2.48 16 14 H 0.10 2.24 7.46 -2.39 -0.02 2.22 16 15 N -0.70 -16.08 5.26 -439.75 -2.31 -18.39 16 16 C 0.54 18.31 7.85 87.66 0.69 19.00 16 17 O -0.56 -23.55 15.46 -3.04 -0.05 -23.60 16 18 C -0.11 -4.26 6.16 71.23 0.44 -3.82 16 19 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 20 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 22 C 0.04 2.65 5.50 84.86 0.47 3.12 16 23 N -0.92 -56.18 13.97 21.65 0.30 -55.88 16 24 Si 0.92 45.28 27.74 68.60 1.90 47.18 16 25 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 28 C -0.16 -3.00 7.69 31.18 0.24 -2.76 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 31 H 0.09 1.19 8.08 -2.38 -0.02 1.18 16 32 H 0.30 -1.45 8.06 -2.91 -0.02 -1.47 16 33 H 0.42 5.19 8.44 -92.70 -0.78 4.41 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.12 0.97 8.11 -2.39 -0.02 0.95 16 36 H 0.42 7.23 8.70 -92.71 -0.81 6.42 16 37 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 39 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -82.79 371.71 -0.89 -83.68 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.53 Total: 13.75 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.65 Total: 3.71 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -7.76 Total: -97.95 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -0.10 Total: -40.51 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -82.79 -0.89 -83.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353552764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.361 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds