Wall clock time and date at job start Tue Mar 31 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34252 * 126.52414 * 2 1 4 4 C 1.34049 * 108.22736 * 180.26366 * 3 2 1 5 5 N 1.29936 * 109.24131 * 359.73747 * 4 3 2 6 6 C 1.36065 * 108.47930 * 359.97438 * 5 4 3 7 7 C 1.47414 * 126.45179 * 180.02562 * 6 5 4 8 8 O 1.21607 * 120.00185 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99993 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00162 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47099 * 184.96787 * 10 9 7 12 12 H 1.09003 * 112.78186 * 45.04124 * 11 10 9 13 13 C 1.53241 * 113.38256 * 274.33857 * 11 10 9 14 14 C 1.53496 * 83.42958 * 219.29433 * 13 11 10 15 15 N 1.47062 * 87.98810 * 25.89359 * 14 13 11 16 16 C 1.34775 * 136.05976 * 152.84148 * 15 14 13 17 17 O 1.21278 * 120.00301 * 174.96885 * 16 15 14 18 18 C 1.50703 * 120.00082 * 354.96996 * 16 15 14 19 19 S 1.80996 * 109.47524 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00138 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00143 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00171 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99537 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00211 * 180.27609 * 22 20 19 25 25 H 1.48506 * 109.46891 * 269.72339 * 24 22 20 26 26 H 1.48494 * 109.47165 * 29.72025 * 24 22 20 27 27 H 1.48498 * 109.46860 * 149.72408 * 24 22 20 28 28 H 1.09003 * 109.47035 * 270.18633 * 1 2 3 29 29 H 1.09001 * 109.47085 * 30.18894 * 1 2 3 30 30 H 1.09003 * 109.47086 * 150.18385 * 1 2 3 31 31 H 1.08005 * 125.38030 * 179.69823 * 4 3 2 32 32 H 0.96999 * 119.99622 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.46625 * 64.96481 * 10 9 7 34 34 H 1.08999 * 109.46723 * 304.96594 * 10 9 7 35 35 H 1.08995 * 114.32865 * 105.66055 * 13 11 10 36 36 H 1.09000 * 114.01490 * 332.89934 * 13 11 10 37 37 H 1.09008 * 113.46424 * 271.11800 * 14 13 11 38 38 H 1.08993 * 113.52450 * 140.68713 * 14 13 11 39 39 H 1.08996 * 109.46834 * 59.99583 * 18 16 15 40 40 H 1.08998 * 109.46982 * 299.99967 * 18 16 15 41 41 H 0.97005 * 119.99576 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6580 -0.0059 5 7 3.6002 -0.6411 -0.0039 6 6 2.3170 -1.0936 0.0040 7 6 1.8854 -2.5032 0.0092 8 8 0.7003 -2.7762 0.0158 9 7 2.8041 -3.4893 0.0068 10 6 2.3751 -4.8901 0.0125 11 6 3.6005 -5.7982 0.1332 12 1 4.3051 -5.4578 0.8920 13 6 4.2595 -6.1126 -1.2141 14 6 4.4282 -7.5116 -0.6054 15 7 3.2632 -7.2253 0.2453 16 6 2.3047 -7.9509 0.8545 17 8 1.5042 -7.4065 1.5850 18 6 2.2276 -9.4388 0.6281 19 16 0.8462 -10.1228 1.5767 20 6 0.9873 -11.8238 1.1395 21 1 1.7684 -12.1454 0.4665 22 6 0.0940 -12.7503 1.6592 23 7 -0.8582 -12.3582 2.4791 24 14 0.2483 -14.5549 1.2018 25 1 -0.5652 -14.8298 -0.0098 26 1 1.6717 -14.8756 0.9256 27 1 -0.2389 -15.3939 2.3261 28 1 -0.3633 0.0033 1.0277 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3633 -0.8916 -0.5110 31 1 4.4489 1.2978 -0.0120 32 1 3.7493 -3.2715 0.0020 33 1 1.8480 -5.1124 -0.9152 34 1 1.7101 -5.0629 0.8587 35 1 5.1972 -5.5854 -1.3893 36 1 3.5757 -6.0738 -2.0621 37 1 5.3555 -7.6322 -0.0452 38 1 4.2580 -8.3192 -1.3172 39 1 3.1576 -9.9045 0.9540 40 1 2.0741 -9.6374 -0.4326 41 1 -1.4823 -13.0058 2.8426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358590175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:37 Heat of formation + Delta-G solvation = -7.069267 kcal Electronic energy + Delta-G solvation = -25717.835309 eV Core-core repulsion = 21727.538753 eV Total energy + Delta-G solvation = -3990.296556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.84246 -40.61057 -39.45835 -37.53113 -35.28783 -34.82771 -32.75595 -32.42255 -30.79664 -29.09412 -28.17374 -27.40572 -25.47153 -24.48123 -23.18008 -22.24304 -21.93726 -20.85896 -19.18246 -18.40539 -17.71079 -17.30341 -16.70102 -16.59896 -16.37602 -15.44364 -15.37228 -15.22644 -14.88553 -14.79520 -14.43327 -14.11859 -13.90924 -13.66799 -13.60105 -13.38474 -12.90241 -12.80361 -12.69830 -12.47539 -12.17771 -11.94822 -11.73474 -11.63465 -11.23327 -11.05877 -11.02436 -10.80794 -10.75653 -10.33160 -9.81720 -9.49071 -9.34298 -9.10654 -9.06055 -8.66264 -8.22910 -6.49670 -6.20796 -3.91633 0.72625 1.65593 2.13945 2.52752 2.96215 3.05161 3.09668 3.22947 3.26380 3.30849 3.56120 3.66672 4.08685 4.20783 4.23758 4.45943 4.57392 4.69640 4.78799 4.83329 4.95162 5.01898 5.11627 5.14221 5.17429 5.33459 5.44295 5.47723 5.52812 5.62617 5.64644 5.69856 5.81263 5.85946 5.95511 6.04041 6.14376 6.26003 6.94917 7.31431 7.60182 7.82477 7.95318 8.35875 8.52865 9.24234 10.86604 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.001977 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.798141 B =14156.290177 C =15078.380980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.048 3.952 3 O -0.200 6.200 4 C 0.174 3.826 5 N -0.464 5.464 6 C -0.079 4.079 7 C 0.602 3.398 8 O -0.526 6.526 9 N -0.708 5.708 10 C 0.112 3.888 11 C 0.124 3.876 12 H 0.096 0.904 13 C -0.153 4.153 14 C 0.102 3.898 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.509 6.509 18 C -0.144 4.144 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.282 1.282 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.255 0.745 32 H 0.407 0.593 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.725 26.019 -9.319 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.009 4.009 3 O -0.087 6.087 4 C -0.055 4.055 5 N -0.193 5.193 6 C -0.199 4.199 7 C 0.387 3.613 8 O -0.403 6.403 9 N -0.360 5.360 10 C -0.012 4.012 11 C 0.019 3.981 12 H 0.113 0.887 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.382 6.382 18 C -0.294 4.294 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.203 1.203 26 H -0.197 1.197 27 H -0.207 1.207 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.271 0.729 32 H 0.242 0.758 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.865 26.016 -7.977 29.685 hybrid contribution 1.307 -1.230 -1.031 2.069 sum 13.172 24.786 -9.008 29.479 Atomic orbital electron populations 1.20653 0.82395 1.05574 1.04991 1.23821 0.95308 0.83276 0.98491 1.84389 1.18592 1.36289 1.69401 1.28000 0.85314 0.91184 1.00998 1.70708 1.21712 1.10241 1.16630 1.21460 0.88873 0.95528 1.14048 1.16648 0.85494 0.82486 0.76702 1.90843 1.16178 1.83097 1.50169 1.45573 1.10122 1.05739 1.74570 1.21654 0.96822 0.78339 1.04379 1.22690 0.95128 0.83354 0.96923 0.88667 1.23559 1.01889 0.96870 0.96731 1.22883 0.88969 0.98087 0.92211 1.49747 1.28169 1.07122 1.53639 1.20015 0.78917 0.88280 0.77714 1.90728 1.40054 1.72189 1.35214 1.23466 1.07028 0.92960 1.05961 1.85435 1.33228 1.05061 1.59529 1.22853 1.19027 0.92524 1.33939 0.90928 1.25002 0.94499 0.99530 0.94597 1.70024 1.15831 1.35029 1.29333 0.86157 0.78498 0.82578 0.78198 1.20259 1.19703 1.20741 0.88724 0.90004 0.86769 0.72905 0.75757 0.90618 0.88918 0.89122 0.88418 0.89695 0.89961 0.89357 0.89226 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.87 36.01 0.36 -0.24 16 2 C 0.05 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.20 -1.54 10.73 6.52 0.07 -1.47 16 4 C 0.17 1.04 13.19 51.96 0.69 1.73 16 5 N -0.46 -4.22 11.06 -11.48 -0.13 -4.34 16 6 C -0.08 -0.86 6.99 -83.02 -0.58 -1.45 16 7 C 0.60 7.78 7.81 -12.52 -0.10 7.68 16 8 O -0.53 -8.36 14.80 5.27 0.08 -8.28 16 9 N -0.71 -7.85 5.55 -61.39 -0.34 -8.19 16 10 C 0.11 1.45 5.47 -4.04 -0.02 1.43 16 11 C 0.12 1.34 4.06 -72.53 -0.29 1.04 16 12 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 13 C -0.15 -1.14 8.00 -26.35 -0.21 -1.35 16 14 C 0.10 0.94 8.42 -8.51 -0.07 0.87 16 15 N -0.65 -9.15 3.57 -177.61 -0.63 -9.78 16 16 C 0.56 10.99 7.97 -10.98 -0.09 10.90 16 17 O -0.51 -12.01 15.47 5.56 0.09 -11.92 16 18 C -0.14 -3.00 5.99 36.01 0.22 -2.78 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.11 1.03 6.49 -51.93 -0.34 0.70 16 31 H 0.26 0.14 8.06 -52.48 -0.42 -0.28 16 32 H 0.41 3.56 8.21 -40.82 -0.34 3.23 16 33 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 34 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.76 7.93 -51.93 -0.41 0.35 16 37 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 41 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -38.69 373.02 -7.13 -45.82 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.21 Total: 0.62 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.17 Total: 4.91 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.37 Total: -48.00 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.23 Total: -21.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.69 -7.13 -45.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358590175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.754 kcal (2) G-P(sol) polarization free energy of solvation -38.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds