Wall clock time and date at job start Tue Mar 31 2020 22:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34252 * 126.52414 * 2 1 4 4 C 1.34049 * 108.22736 * 180.26366 * 3 2 1 5 5 N 1.29936 * 109.24131 * 359.73747 * 4 3 2 6 6 C 1.36065 * 108.47930 * 359.97438 * 5 4 3 7 7 C 1.47414 * 126.45179 * 180.02562 * 6 5 4 8 8 O 1.21607 * 120.00185 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99993 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00162 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47099 * 184.96787 * 10 9 7 12 12 H 1.09003 * 112.78186 * 45.04124 * 11 10 9 13 13 C 1.53241 * 113.38256 * 274.33857 * 11 10 9 14 14 C 1.53496 * 83.42958 * 219.29433 * 13 11 10 15 15 N 1.47062 * 87.98810 * 25.89359 * 14 13 11 16 16 C 1.34775 * 136.05976 * 152.84148 * 15 14 13 17 17 O 1.21278 * 120.00301 * 174.96885 * 16 15 14 18 18 C 1.50703 * 120.00082 * 354.96996 * 16 15 14 19 19 S 1.80996 * 109.47524 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00138 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00143 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00171 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99537 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00211 * 180.27609 * 22 20 19 25 25 H 1.48506 * 109.46891 * 269.72339 * 24 22 20 26 26 H 1.48494 * 109.47165 * 29.72025 * 24 22 20 27 27 H 1.48498 * 109.46860 * 149.72408 * 24 22 20 28 28 H 1.09003 * 109.47035 * 270.18633 * 1 2 3 29 29 H 1.09001 * 109.47085 * 30.18894 * 1 2 3 30 30 H 1.09003 * 109.47086 * 150.18385 * 1 2 3 31 31 H 1.08005 * 125.38030 * 179.69823 * 4 3 2 32 32 H 0.96999 * 119.99622 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.46625 * 64.96481 * 10 9 7 34 34 H 1.08999 * 109.46723 * 304.96594 * 10 9 7 35 35 H 1.08995 * 114.32865 * 105.66055 * 13 11 10 36 36 H 1.09000 * 114.01490 * 332.89934 * 13 11 10 37 37 H 1.09008 * 113.46424 * 271.11800 * 14 13 11 38 38 H 1.08993 * 113.52450 * 140.68713 * 14 13 11 39 39 H 1.08996 * 109.46834 * 59.99583 * 18 16 15 40 40 H 1.08998 * 109.46982 * 299.99967 * 18 16 15 41 41 H 0.97005 * 119.99576 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6580 -0.0059 5 7 3.6002 -0.6411 -0.0039 6 6 2.3170 -1.0936 0.0040 7 6 1.8854 -2.5032 0.0092 8 8 0.7003 -2.7762 0.0158 9 7 2.8041 -3.4893 0.0068 10 6 2.3751 -4.8901 0.0125 11 6 3.6005 -5.7982 0.1332 12 1 4.3051 -5.4578 0.8920 13 6 4.2595 -6.1126 -1.2141 14 6 4.4282 -7.5116 -0.6054 15 7 3.2632 -7.2253 0.2453 16 6 2.3047 -7.9509 0.8545 17 8 1.5042 -7.4065 1.5850 18 6 2.2276 -9.4388 0.6281 19 16 0.8462 -10.1228 1.5767 20 6 0.9873 -11.8238 1.1395 21 1 1.7684 -12.1454 0.4665 22 6 0.0940 -12.7503 1.6592 23 7 -0.8582 -12.3582 2.4791 24 14 0.2483 -14.5549 1.2018 25 1 -0.5652 -14.8298 -0.0098 26 1 1.6717 -14.8756 0.9256 27 1 -0.2389 -15.3939 2.3261 28 1 -0.3633 0.0033 1.0277 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3633 -0.8916 -0.5110 31 1 4.4489 1.2978 -0.0120 32 1 3.7493 -3.2715 0.0020 33 1 1.8480 -5.1124 -0.9152 34 1 1.7101 -5.0629 0.8587 35 1 5.1972 -5.5854 -1.3893 36 1 3.5757 -6.0738 -2.0621 37 1 5.3555 -7.6322 -0.0452 38 1 4.2580 -8.3192 -1.3172 39 1 3.1576 -9.9045 0.9540 40 1 2.0741 -9.6374 -0.4326 41 1 -1.4823 -13.0058 2.8426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358590175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:36 Heat of formation + Delta-G solvation = -39.503265 kcal Electronic energy + Delta-G solvation = -25719.241752 eV Core-core repulsion = 21727.538753 eV Total energy + Delta-G solvation = -3991.702999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.46425 -41.67670 -40.51476 -38.93430 -36.09353 -35.71712 -34.60756 -33.41005 -32.21178 -30.04464 -29.48622 -28.12202 -27.66205 -25.25224 -23.96145 -23.21345 -22.73688 -21.74909 -20.35128 -19.68338 -19.17914 -18.04262 -17.92730 -17.50889 -17.29853 -16.90759 -16.75611 -16.45587 -16.27525 -15.80129 -15.63572 -15.53469 -15.01938 -14.76896 -14.51407 -14.40989 -13.99098 -13.93558 -13.82647 -13.41531 -13.39734 -13.17568 -13.03186 -12.90209 -12.62996 -12.45305 -12.42630 -11.90258 -11.75699 -11.71012 -11.32412 -11.16129 -10.88501 -10.37029 -10.30841 -9.92011 -9.81350 -8.70994 -8.36385 -6.15847 -0.00325 1.02715 1.15573 1.38999 1.41751 1.50454 1.53020 1.56950 1.80324 2.14486 2.21842 2.25922 2.97583 3.07195 3.18254 3.33014 3.60102 3.62306 3.69863 3.79051 3.95702 4.01780 4.22123 4.23446 4.37044 4.42800 4.45870 4.53375 4.56792 4.64722 4.70101 4.83782 4.92538 4.96943 5.06294 5.17612 5.20868 5.32007 5.39380 6.17785 6.20565 6.53992 6.59595 7.00523 7.04221 7.09154 8.73016 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.001977 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.798141 B =14156.290177 C =15078.380980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 O -0.198 6.198 4 C 0.199 3.801 5 N -0.489 5.489 6 C -0.105 4.105 7 C 0.594 3.406 8 O -0.568 6.568 9 N -0.693 5.693 10 C 0.121 3.879 11 C 0.120 3.880 12 H 0.118 0.882 13 C -0.126 4.126 14 C 0.097 3.903 15 N -0.649 5.649 16 C 0.556 3.444 17 O -0.566 6.566 18 C -0.116 4.116 19 S -0.155 6.155 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.267 1.267 26 H -0.256 1.256 27 H -0.277 1.277 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.308 0.692 32 H 0.421 0.579 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.512 26.945 -11.340 34.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.012 4.012 3 O -0.085 6.085 4 C -0.030 4.030 5 N -0.217 5.217 6 C -0.223 4.223 7 C 0.381 3.619 8 O -0.448 6.448 9 N -0.345 5.345 10 C -0.004 4.004 11 C 0.016 3.984 12 H 0.136 0.864 13 C -0.163 4.163 14 C -0.024 4.024 15 N -0.387 5.387 16 C 0.345 3.655 17 O -0.444 6.444 18 C -0.267 4.267 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.548 5.548 24 Si 0.823 3.177 25 H -0.193 1.193 26 H -0.180 1.180 27 H -0.203 1.203 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.322 0.678 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.154 0.846 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.754 26.960 -10.047 32.802 hybrid contribution 0.272 -1.295 -0.454 1.399 sum 16.026 25.665 -10.501 32.028 Atomic orbital electron populations 1.20651 0.81776 1.05793 1.05317 1.24015 0.95984 0.83379 0.97793 1.84428 1.19180 1.35518 1.69388 1.29243 0.85755 0.90829 0.97157 1.70674 1.20626 1.11851 1.18547 1.21217 0.90339 0.94525 1.16265 1.17074 0.85138 0.83774 0.75906 1.90818 1.17897 1.83955 1.52085 1.45391 1.10649 1.04653 1.73833 1.21390 0.97364 0.79973 1.01626 1.23083 0.94326 0.80838 1.00137 0.86423 1.23521 1.03175 0.95486 0.94122 1.23346 0.87751 0.99544 0.91794 1.49804 1.27902 1.08919 1.52066 1.19734 0.79897 0.87920 0.77910 1.90707 1.42736 1.72910 1.38061 1.23243 1.04134 0.94078 1.05231 1.85656 1.38146 1.06740 1.62241 1.23182 1.19502 0.92446 1.34146 0.89819 1.26193 0.93801 1.05164 0.94203 1.70200 1.16929 1.36965 1.30747 0.84905 0.79313 0.75403 0.78046 1.19250 1.18006 1.20251 0.88329 0.87374 0.88863 0.67764 0.74073 0.91789 0.93843 0.84619 0.88586 0.86775 0.89051 0.87505 0.87633 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 9.87 71.24 0.70 -0.50 16 2 C 0.05 0.83 7.44 25.19 0.19 1.01 16 3 O -0.20 -2.59 10.73 0.43 0.00 -2.59 16 4 C 0.20 1.74 13.19 130.52 1.72 3.47 16 5 N -0.49 -7.95 11.06 -305.15 -3.37 -11.33 16 6 C -0.11 -2.27 6.99 40.41 0.28 -1.99 16 7 C 0.59 16.12 7.81 86.66 0.68 16.79 16 8 O -0.57 -19.60 14.80 -4.05 -0.06 -19.66 16 9 N -0.69 -15.53 5.55 -466.39 -2.59 -18.12 16 10 C 0.12 3.27 5.47 86.38 0.47 3.75 16 11 C 0.12 2.40 4.06 41.70 0.17 2.56 16 12 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 13 C -0.13 -1.38 8.00 30.84 0.25 -1.14 16 14 C 0.10 1.42 8.42 83.18 0.70 2.12 16 15 N -0.65 -17.67 3.57 -834.22 -2.98 -20.65 16 16 C 0.56 22.34 7.97 87.66 0.70 23.04 16 17 O -0.57 -28.52 15.47 -3.02 -0.05 -28.57 16 18 C -0.12 -4.87 5.99 71.24 0.43 -4.45 16 19 S -0.16 -8.97 20.57 -56.49 -1.16 -10.13 16 20 C -0.55 -31.84 9.50 67.95 0.65 -31.19 16 21 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 22 C 0.01 0.64 5.49 84.86 0.47 1.10 16 23 N -0.91 -57.29 13.22 21.65 0.29 -57.00 16 24 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.85 6.49 -2.39 -0.02 1.84 16 31 H 0.31 -1.23 8.06 -2.91 -0.02 -1.26 16 32 H 0.42 6.82 8.21 -92.71 -0.76 6.06 16 33 H 0.06 1.84 7.88 -2.39 -0.02 1.82 16 34 H 0.04 1.63 7.15 -2.39 -0.02 1.61 16 35 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.10 1.18 7.93 -2.39 -0.02 1.16 16 37 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 40 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 41 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -92.83 373.02 -0.17 -93.00 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.32 Total: 14.18 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 7.40 Total: 14.59 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -8.65 Total: -107.09 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.10 Total: -50.82 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -92.83 -0.17 -93.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358590175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.499 kcal (2) G-P(sol) polarization free energy of solvation -92.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds