Wall clock time and date at job start Tue Mar 31 2020 22:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33687 * 126.27261 * 2 1 4 4 C 1.30615 * 108.99782 * 179.97438 * 3 2 1 5 5 O 1.33667 * 109.15324 * 359.97438 * 4 3 2 6 6 C 1.35339 * 107.68365 * 359.97438 * 5 4 3 7 7 C 1.46718 * 126.64453 * 180.02562 * 6 5 4 8 8 O 1.21694 * 120.00015 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00244 * 0.02914 * 7 6 5 10 10 C 1.46498 * 120.00140 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46690 * 184.93083 * 10 9 7 12 12 H 1.09000 * 112.96743 * 308.98231 * 11 10 9 13 13 C 1.53950 * 113.76568 * 177.30716 * 11 10 9 14 14 C 1.53943 * 86.29003 * 222.08897 * 13 11 10 15 15 N 1.47577 * 113.77109 * 80.66523 * 11 10 9 16 16 C 1.34773 * 134.49416 * 318.93433 * 15 11 10 17 17 O 1.21281 * 120.00060 * 5.08254 * 16 15 11 18 18 C 1.50700 * 120.00409 * 185.08812 * 16 15 11 19 19 S 1.81002 * 109.47502 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00098 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00008 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00027 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00035 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99756 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47240 * 90.00112 * 24 22 20 26 26 H 1.48507 * 109.46864 * 210.00013 * 24 22 20 27 27 H 1.48495 * 109.47363 * 329.99496 * 24 22 20 28 28 H 1.09000 * 109.47219 * 90.02889 * 1 2 3 29 29 H 1.08998 * 109.47254 * 210.02835 * 1 2 3 30 30 H 1.08999 * 109.47633 * 330.02788 * 1 2 3 31 31 H 1.08002 * 125.42672 * 179.97438 * 4 3 2 32 32 H 0.96996 * 119.99568 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.46836 * 304.92933 * 10 9 7 34 34 H 1.09001 * 109.47458 * 64.93117 * 10 9 7 35 35 H 1.08991 * 113.74189 * 336.43629 * 13 11 10 36 36 H 1.08997 * 113.73965 * 107.74894 * 13 11 10 37 37 H 1.09003 * 113.77223 * 137.90804 * 14 13 11 38 38 H 1.08996 * 113.77514 * 269.19504 * 14 13 11 39 39 H 1.09000 * 109.47345 * 299.99664 * 18 16 15 40 40 H 1.09007 * 109.47406 * 59.99338 * 18 16 15 41 41 H 0.97000 * 119.99924 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5451 0.6899 0.0006 5 8 3.5889 -0.6460 0.0015 6 6 2.3137 -1.0992 0.0021 7 6 1.8827 -2.5016 0.0037 8 8 0.6965 -2.7737 0.0036 9 7 2.8004 -3.4887 0.0053 10 6 2.3701 -4.8890 0.0064 11 6 3.5940 -5.7985 0.1322 12 1 4.3741 -5.5644 -0.5922 13 6 3.2483 -7.2967 0.2093 14 6 4.3233 -7.3859 1.3076 15 7 4.0895 -5.9411 1.5149 16 6 4.2592 -5.0942 2.5495 17 8 3.8860 -3.9438 2.4590 18 6 4.9128 -5.5766 3.8188 19 16 4.9959 -4.2159 5.0096 20 6 5.7793 -5.0365 6.3577 21 1 6.0488 -6.0789 6.2724 22 6 6.0492 -4.3436 7.5297 23 7 6.6340 -4.9568 8.5370 24 14 5.5812 -2.5412 7.6779 25 1 4.2043 -2.4305 8.2226 26 1 6.5314 -1.8566 8.5910 27 1 5.6362 -1.9037 6.3379 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 4.4043 1.3444 0.0003 32 1 3.7458 -3.2718 0.0051 33 1 1.7003 -5.0626 0.8486 34 1 1.8478 -5.1094 -0.9246 35 1 2.2382 -7.4962 0.5667 36 1 3.4979 -7.8517 -0.6950 37 1 4.0338 -8.0052 2.1566 38 1 5.3187 -7.6201 0.9302 39 1 4.3279 -6.3939 4.2408 40 1 5.9208 -5.9277 3.5978 41 1 6.8223 -4.4726 9.3562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358596113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:52 Heat of formation + Delta-G solvation = -8.679328 kcal Electronic energy + Delta-G solvation = -26793.107251 eV Core-core repulsion = 22802.740878 eV Total energy + Delta-G solvation = -3990.366373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.55013 -40.58910 -39.32170 -37.57290 -35.63218 -34.62229 -32.47760 -31.82417 -30.94715 -29.20610 -28.26708 -27.53443 -25.64613 -24.36302 -23.19075 -22.16206 -21.71554 -20.72488 -19.23034 -18.33308 -17.69623 -17.02099 -16.79821 -16.69891 -16.40498 -15.94149 -15.44160 -15.04353 -14.81668 -14.68596 -14.49494 -14.04209 -13.95625 -13.47493 -13.35471 -13.12604 -12.88899 -12.75473 -12.56383 -12.39109 -12.28927 -12.10741 -11.72206 -11.36084 -11.28754 -11.23530 -11.04384 -11.03744 -10.65011 -10.23676 -9.89068 -9.48991 -9.34565 -9.04131 -8.94660 -8.77063 -8.54326 -6.96154 -6.32684 -4.04671 0.71673 2.27622 2.33715 2.46676 2.85892 2.96389 3.04430 3.14480 3.30341 3.46690 3.53064 3.88947 4.06223 4.28979 4.41180 4.47304 4.59208 4.64641 4.66197 4.84418 4.97174 5.03278 5.06591 5.19804 5.27254 5.32319 5.35990 5.42837 5.52667 5.55690 5.68390 5.71586 5.80207 5.83477 5.96131 5.97923 6.13175 6.23751 7.19435 7.46313 7.64666 7.90441 7.94627 8.36515 8.37672 9.13550 10.76623 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.003792 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.745075 B = 7382.260450 C = 9798.083754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.075 3.925 3 N -0.495 5.495 4 C 0.202 3.798 5 O -0.187 6.187 6 C -0.107 4.107 7 C 0.615 3.385 8 O -0.523 6.523 9 N -0.698 5.698 10 C 0.123 3.877 11 C 0.120 3.880 12 H 0.098 0.902 13 C -0.141 4.141 14 C 0.102 3.898 15 N -0.649 5.649 16 C 0.552 3.448 17 O -0.508 6.508 18 C -0.116 4.116 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.097 3.903 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.273 1.273 27 H -0.236 1.236 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.408 0.592 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -0.253 -23.246 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 N -0.225 5.225 4 C -0.023 4.023 5 O -0.072 6.072 6 C -0.163 4.163 7 C 0.401 3.599 8 O -0.402 6.402 9 N -0.348 5.348 10 C -0.002 4.002 11 C 0.016 3.984 12 H 0.116 0.884 13 C -0.179 4.179 14 C -0.021 4.021 15 N -0.389 5.389 16 C 0.341 3.659 17 O -0.382 6.382 18 C -0.267 4.267 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.272 0.728 32 H 0.243 0.757 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.509 1.974 -22.987 24.263 hybrid contribution 1.498 -1.095 0.678 1.975 sum -6.012 0.879 -22.309 23.122 Atomic orbital electron populations 1.20374 0.85393 1.04473 1.03452 1.22039 0.98367 0.86381 0.98111 1.70334 1.01352 1.31440 1.19367 1.28316 0.97593 0.79486 0.96895 1.84514 1.29582 1.24378 1.68720 1.22858 0.81487 0.96243 1.15674 1.16180 0.85576 0.81406 0.76765 1.90836 1.15767 1.82024 1.51534 1.45594 1.10103 1.05637 1.73424 1.21569 0.96199 0.79378 1.03016 1.23052 0.95230 0.95493 0.84621 0.88404 1.23538 1.00703 0.93917 0.99741 1.23162 0.98950 0.81840 0.98124 1.50284 1.66768 1.10480 1.11351 1.20037 0.77741 0.84633 0.83441 1.90720 1.48511 1.17456 1.81466 1.23219 1.03183 1.04542 0.95710 1.84795 1.80134 1.14857 1.11684 1.22303 1.44954 1.00539 0.99135 0.89420 1.24696 0.93446 0.98660 0.94379 1.69935 1.40198 1.37134 1.04373 0.86746 0.79359 0.84959 0.80837 1.19184 1.19868 1.16049 0.90179 0.88640 0.90497 0.72849 0.75702 0.90140 0.90035 0.88402 0.89246 0.89549 0.89542 0.88819 0.88706 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.87 36.00 0.36 -0.58 16 2 C 0.07 1.04 7.16 -82.47 -0.59 0.45 16 3 N -0.50 -6.53 11.26 -10.89 -0.12 -6.65 16 4 C 0.20 2.14 13.21 52.24 0.69 2.83 16 5 O -0.19 -2.42 10.57 4.43 0.05 -2.37 16 6 C -0.11 -1.55 7.18 -36.84 -0.26 -1.81 16 7 C 0.62 9.12 7.79 -12.83 -0.10 9.02 16 8 O -0.52 -8.55 14.79 5.19 0.08 -8.48 16 9 N -0.70 -8.94 4.18 -61.61 -0.26 -9.19 16 10 C 0.12 1.30 5.22 -4.04 -0.02 1.28 16 11 C 0.12 1.03 4.29 -66.86 -0.29 0.74 16 12 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.14 -0.81 7.86 -25.79 -0.20 -1.01 16 14 C 0.10 0.79 8.63 -2.85 -0.02 0.77 16 15 N -0.65 -7.76 3.50 -170.17 -0.60 -8.36 16 16 C 0.55 9.50 7.99 -10.99 -0.09 9.42 16 17 O -0.51 -10.31 14.40 5.56 0.08 -10.23 16 18 C -0.12 -2.23 5.92 36.01 0.21 -2.02 16 19 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 20 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 21 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 23 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 24 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.23 6.47 -51.93 -0.34 0.89 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.26 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.41 5.13 7.93 -40.82 -0.32 4.81 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.58 8.10 -51.93 -0.42 0.15 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 40 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 41 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -37.59 368.86 -6.56 -44.15 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.31 Total: 2.57 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.10 Total: 7.13 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.20 Total: -49.95 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.20 Total: -21.08 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.59 -6.56 -44.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358596113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.472 kcal (2) G-P(sol) polarization free energy of solvation -37.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds