Wall clock time and date at job start Tue Mar 31 2020 22:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 108.58348 * 2 1 4 4 C 1.50696 * 109.47065 * 300.70417 * 3 2 1 5 5 O 1.21272 * 119.99921 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00131 * 180.02562 * 4 3 2 7 7 C 1.39272 * 120.00284 * 185.14587 * 6 4 3 8 8 C 1.39663 * 119.57870 * 174.67568 * 7 6 4 9 9 C 1.38650 * 119.50013 * 180.02562 * 8 7 6 10 10 C 1.38346 * 118.66661 * 359.97438 * 9 8 7 11 11 C 1.40577 * 119.13063 * 0.02562 * 10 9 8 12 12 C 1.41344 * 119.78805 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00184 * 0.26822 * 12 11 10 14 14 C 1.40027 * 119.99620 * 179.97438 * 12 11 10 15 15 N 1.30735 * 120.00343 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99519 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46960 * 90.00205 * 16 14 12 18 18 H 1.48497 * 109.47209 * 209.99912 * 16 14 12 19 19 H 1.48502 * 109.47468 * 329.99950 * 16 14 12 20 20 N 1.31909 * 119.57259 * 354.94980 * 7 6 4 21 21 C 1.53204 * 108.64945 * 117.99780 * 2 1 3 22 22 C 1.55552 * 106.24554 * 148.48229 * 21 2 1 23 23 S 1.83902 * 99.64071 * 323.01402 * 22 21 2 24 24 O 1.42098 * 111.46737 * 144.08605 * 23 22 21 25 25 O 1.42098 * 111.46604 * 283.93586 * 23 22 21 26 26 N 1.46453 * 108.65203 * 242.00073 * 2 1 3 27 27 H 1.08998 * 109.46925 * 59.30528 * 1 2 3 28 28 H 1.09010 * 109.47105 * 179.29842 * 1 2 3 29 29 H 1.08995 * 109.47408 * 299.29898 * 1 2 3 30 30 H 1.08999 * 109.47573 * 180.70146 * 3 2 1 31 31 H 1.09007 * 109.46990 * 60.69706 * 3 2 1 32 32 H 0.96995 * 120.00427 * 5.13642 * 6 4 3 33 33 H 1.08004 * 120.25315 * 359.97438 * 8 7 6 34 34 H 1.07999 * 120.67093 * 179.97438 * 9 8 7 35 35 H 1.08006 * 120.43814 * 180.02562 * 10 9 8 36 36 H 0.96996 * 120.00223 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.10112 * 267.68140 * 21 2 1 38 38 H 1.09009 * 110.09707 * 29.28691 * 21 2 1 39 39 H 1.09001 * 111.36925 * 80.61144 * 22 21 2 40 40 H 1.08995 * 111.37200 * 205.35836 * 22 21 2 41 41 H 0.97003 * 126.07686 * 57.31103 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.4900 2.1575 -1.2216 5 8 0.7931 1.5604 -2.0144 6 7 1.7935 3.4534 -1.4337 7 6 1.2204 4.1369 -2.5033 8 6 1.4524 5.5062 -2.6503 9 6 0.8807 6.1851 -3.7154 10 6 0.0925 5.4788 -4.6064 11 6 -0.1032 4.1015 -4.4040 12 6 -0.9064 3.3665 -5.3054 13 1 -1.3639 3.8622 -6.1488 14 6 -1.1038 1.9943 -5.1083 15 7 -0.5449 1.3929 -4.0909 16 14 -2.1658 1.0230 -6.2992 17 1 -1.3189 0.4909 -7.3969 18 1 -2.8108 -0.1050 -5.5805 19 1 -3.2119 1.9110 -6.8671 20 7 0.4609 3.4836 -3.3615 21 6 2.0199 -0.6814 1.2817 22 6 3.3653 -1.3732 0.9198 23 16 2.9740 -1.9335 -0.7875 24 8 4.1108 -1.8489 -1.6359 25 8 2.1272 -3.0746 -0.7791 26 7 1.9983 -0.6514 -1.2252 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3634 -1.0277 -0.0126 29 1 -0.3634 0.5029 0.8961 30 1 3.1073 1.4672 -0.0126 31 1 1.6565 1.9549 0.8962 32 1 2.4109 3.9102 -0.8413 33 1 2.0719 6.0326 -1.9392 34 1 1.0472 7.2441 -3.8470 35 1 -0.3665 5.9790 -5.4465 36 1 -0.6814 0.4423 -3.9546 37 1 2.1789 0.0612 2.0635 38 1 1.2937 -1.4242 1.6121 39 1 4.1914 -0.6622 0.9249 40 1 3.5678 -2.2172 1.5790 41 1 1.7798 -0.3865 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412271663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:59 Heat of formation + Delta-G solvation = -35.168320 kcal Electronic energy + Delta-G solvation = -28453.299257 eV Core-core repulsion = 24461.784235 eV Total energy + Delta-G solvation = -3991.515022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.95336 -38.40643 -37.12406 -36.78879 -35.81218 -34.15980 -33.05021 -31.77297 -30.65701 -30.27611 -29.23989 -27.58410 -25.50792 -24.22378 -22.23512 -21.32368 -20.41593 -19.45178 -19.36244 -17.81221 -17.44153 -16.65502 -16.14481 -15.81097 -15.74012 -15.18509 -14.72045 -14.54883 -14.49373 -14.39054 -13.81500 -13.51598 -13.42934 -13.24445 -12.87928 -12.66915 -12.41312 -12.08010 -11.99014 -11.93636 -11.82446 -11.75944 -11.40167 -11.24178 -11.07832 -10.97045 -10.81938 -10.67657 -10.57820 -10.49784 -9.95883 -9.65387 -9.29644 -9.03692 -8.88119 -7.99180 -7.24215 -6.99847 -6.18195 -4.42399 0.27155 2.67827 2.73748 3.04107 3.17686 3.18845 3.25047 3.59808 3.66609 3.71644 3.89913 4.04769 4.12260 4.40664 4.60104 4.86339 4.90212 5.07960 5.19383 5.21783 5.36151 5.41767 5.58103 5.70518 5.78641 6.01305 6.08654 6.10958 6.24448 6.45523 6.62598 6.78506 6.82117 6.86985 7.21683 7.49790 7.52051 7.60329 7.78571 8.03178 8.16895 8.43808 8.71183 9.02323 9.21550 10.20398 10.44066 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.004487 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.034203 B = 6238.663568 C = 7718.107103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.162 3.838 3 C -0.149 4.149 4 C 0.474 3.526 5 O -0.403 6.403 6 N -0.667 5.667 7 C 0.370 3.630 8 C -0.358 4.358 9 C -0.037 4.037 10 C -0.305 4.305 11 C 0.271 3.729 12 C -0.424 4.424 13 H 0.081 0.919 14 C 0.060 3.940 15 N -0.656 5.656 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.264 1.264 20 N -0.471 5.471 21 C -0.116 4.116 22 C -0.598 4.598 23 S 2.566 3.434 24 O -0.965 6.965 25 O -0.958 6.958 26 N -1.074 6.074 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.398 0.602 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.271 0.729 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 -3.941 14.263 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.071 3.929 3 C -0.192 4.192 4 C 0.256 3.744 5 O -0.267 6.267 6 N -0.313 5.313 7 C 0.132 3.868 8 C -0.383 4.383 9 C -0.061 4.061 10 C -0.328 4.328 11 C 0.146 3.854 12 C -0.454 4.454 13 H 0.099 0.901 14 C -0.169 4.169 15 N -0.275 5.275 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.188 1.188 20 N -0.189 5.189 21 C -0.155 4.155 22 C -0.728 4.728 23 S 2.660 3.340 24 O -0.955 6.955 25 O -0.947 6.947 26 N -0.845 5.845 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 5.707 -6.449 13.395 15.925 hybrid contribution 0.018 1.541 -0.013 1.541 sum 5.726 -4.908 13.382 15.361 Atomic orbital electron populations 1.22562 0.92419 1.03116 1.04973 1.20198 0.97219 0.91759 0.83689 1.22265 1.02307 0.95841 0.98760 1.20563 0.83329 0.82360 0.88102 1.91006 1.30899 1.62581 1.42236 1.43451 1.46762 1.11726 1.29383 1.18630 0.92508 0.87435 0.88261 1.20492 1.17508 0.93915 1.06426 1.20559 0.94849 0.97118 0.93560 1.21629 1.10637 0.96582 1.03990 1.18374 0.89533 0.88247 0.89240 1.19572 1.24533 0.92968 1.08354 0.90071 1.26126 0.96322 0.98557 0.95888 1.70299 1.26983 1.10009 1.20180 0.86538 0.80709 0.79723 0.81105 1.19680 1.20273 1.18849 1.68690 1.11904 1.34513 1.03841 1.22532 0.93592 1.01667 0.97696 1.30805 1.05769 1.11841 1.24396 1.06413 0.75122 0.74693 0.77784 1.93606 1.52025 1.86650 1.63181 1.93642 1.65941 1.49053 1.86087 1.55042 1.66813 1.49170 1.13515 0.87234 0.92319 0.92694 0.89358 0.88684 0.76870 0.89216 0.88725 0.88652 0.91680 0.87196 0.88298 0.84227 0.84521 0.70606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 8.15 37.16 0.30 -1.95 16 2 C 0.16 1.84 0.83 -131.74 -0.11 1.73 16 3 C -0.15 -1.65 4.70 -27.89 -0.13 -1.78 16 4 C 0.47 8.16 7.27 -10.99 -0.08 8.08 16 5 O -0.40 -8.50 7.57 5.56 0.04 -8.45 16 6 N -0.67 -11.86 5.38 -11.40 -0.06 -11.92 16 7 C 0.37 8.54 7.43 -154.97 -1.15 7.39 16 8 C -0.36 -7.75 9.95 -38.90 -0.39 -8.14 16 9 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 10 C -0.31 -7.54 9.83 -38.66 -0.38 -7.92 16 11 C 0.27 7.39 6.55 -85.00 -0.56 6.83 16 12 C -0.42 -11.36 9.14 -37.73 -0.34 -11.71 16 13 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 14 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 15 N -0.66 -17.02 8.99 55.55 0.50 -16.52 16 16 Si 0.89 19.02 29.56 -169.99 -5.02 14.00 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 20 N -0.47 -12.49 5.74 -10.25 -0.06 -12.55 16 21 C -0.12 -0.85 5.56 -25.27 -0.14 -0.99 16 22 C -0.60 -4.23 7.66 38.52 0.29 -3.94 16 23 S 2.57 32.25 6.46 -107.50 -0.69 31.56 16 24 O -0.97 -15.73 18.14 -57.40 -1.04 -16.77 16 25 O -0.96 -15.06 18.15 -57.40 -1.04 -16.10 16 26 N -1.07 -14.95 5.65 0.60 0.00 -14.95 16 27 H 0.11 1.91 5.35 -51.93 -0.28 1.63 16 28 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.79 8.05 -51.92 -0.42 0.37 16 32 H 0.40 5.35 8.70 -40.82 -0.36 4.99 16 33 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 37 H 0.11 0.52 7.71 -51.93 -0.40 0.12 16 38 H 0.10 0.66 7.83 -51.92 -0.41 0.26 16 39 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.45 7.48 7.26 -40.18 -0.29 7.18 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -35.92 345.60 -10.42 -46.34 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.08 Total: 12.35 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.18 Total: -12.19 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.38 Total: -55.94 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.04 Total: -41.32 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 16 Polarization: 32.25 SS G_CDS: -0.69 Total: 31.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.92 -10.42 -46.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412271663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.173 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds