Wall clock time and date at job start Tue Mar 31 2020 22:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 108.58348 * 2 1 4 4 C 1.50696 * 109.47065 * 300.70417 * 3 2 1 5 5 O 1.21272 * 119.99921 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00131 * 180.02562 * 4 3 2 7 7 C 1.39272 * 120.00284 * 185.14587 * 6 4 3 8 8 C 1.39663 * 119.57870 * 174.67568 * 7 6 4 9 9 C 1.38650 * 119.50013 * 180.02562 * 8 7 6 10 10 C 1.38346 * 118.66661 * 359.97438 * 9 8 7 11 11 C 1.40577 * 119.13063 * 0.02562 * 10 9 8 12 12 C 1.41344 * 119.78805 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00184 * 0.26822 * 12 11 10 14 14 C 1.40027 * 119.99620 * 179.97438 * 12 11 10 15 15 N 1.30735 * 120.00343 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99519 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46960 * 90.00205 * 16 14 12 18 18 H 1.48497 * 109.47209 * 209.99912 * 16 14 12 19 19 H 1.48502 * 109.47468 * 329.99950 * 16 14 12 20 20 N 1.31909 * 119.57259 * 354.94980 * 7 6 4 21 21 C 1.53204 * 108.64945 * 117.99780 * 2 1 3 22 22 C 1.55552 * 106.24554 * 148.48229 * 21 2 1 23 23 S 1.83902 * 99.64071 * 323.01402 * 22 21 2 24 24 O 1.42098 * 111.46737 * 144.08605 * 23 22 21 25 25 O 1.42098 * 111.46604 * 283.93586 * 23 22 21 26 26 N 1.46453 * 108.65203 * 242.00073 * 2 1 3 27 27 H 1.08998 * 109.46925 * 59.30528 * 1 2 3 28 28 H 1.09010 * 109.47105 * 179.29842 * 1 2 3 29 29 H 1.08995 * 109.47408 * 299.29898 * 1 2 3 30 30 H 1.08999 * 109.47573 * 180.70146 * 3 2 1 31 31 H 1.09007 * 109.46990 * 60.69706 * 3 2 1 32 32 H 0.96995 * 120.00427 * 5.13642 * 6 4 3 33 33 H 1.08004 * 120.25315 * 359.97438 * 8 7 6 34 34 H 1.07999 * 120.67093 * 179.97438 * 9 8 7 35 35 H 1.08006 * 120.43814 * 180.02562 * 10 9 8 36 36 H 0.96996 * 120.00223 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.10112 * 267.68140 * 21 2 1 38 38 H 1.09009 * 110.09707 * 29.28691 * 21 2 1 39 39 H 1.09001 * 111.36925 * 80.61144 * 22 21 2 40 40 H 1.08995 * 111.37200 * 205.35836 * 22 21 2 41 41 H 0.97003 * 126.07686 * 57.31103 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.4900 2.1575 -1.2216 5 8 0.7931 1.5604 -2.0144 6 7 1.7935 3.4534 -1.4337 7 6 1.2204 4.1369 -2.5033 8 6 1.4524 5.5062 -2.6503 9 6 0.8807 6.1851 -3.7154 10 6 0.0925 5.4788 -4.6064 11 6 -0.1032 4.1015 -4.4040 12 6 -0.9064 3.3665 -5.3054 13 1 -1.3639 3.8622 -6.1488 14 6 -1.1038 1.9943 -5.1083 15 7 -0.5449 1.3929 -4.0909 16 14 -2.1658 1.0230 -6.2992 17 1 -1.3189 0.4909 -7.3969 18 1 -2.8108 -0.1050 -5.5805 19 1 -3.2119 1.9110 -6.8671 20 7 0.4609 3.4836 -3.3615 21 6 2.0199 -0.6814 1.2817 22 6 3.3653 -1.3732 0.9198 23 16 2.9740 -1.9335 -0.7875 24 8 4.1108 -1.8489 -1.6359 25 8 2.1272 -3.0746 -0.7791 26 7 1.9983 -0.6514 -1.2252 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3634 -1.0277 -0.0126 29 1 -0.3634 0.5029 0.8961 30 1 3.1073 1.4672 -0.0126 31 1 1.6565 1.9549 0.8962 32 1 2.4109 3.9102 -0.8413 33 1 2.0719 6.0326 -1.9392 34 1 1.0472 7.2441 -3.8470 35 1 -0.3665 5.9790 -5.4465 36 1 -0.6814 0.4423 -3.9546 37 1 2.1789 0.0612 2.0635 38 1 1.2937 -1.4242 1.6121 39 1 4.1914 -0.6622 0.9249 40 1 3.5678 -2.2172 1.5790 41 1 1.7798 -0.3865 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412271663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:58 Heat of formation + Delta-G solvation = -63.811014 kcal Electronic energy + Delta-G solvation = -28454.541298 eV Core-core repulsion = 24461.784235 eV Total energy + Delta-G solvation = -3992.757062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.19452 -39.86868 -38.35825 -37.93143 -36.87313 -35.81351 -34.76461 -32.54662 -32.21237 -31.68160 -30.74081 -28.75885 -27.31938 -24.99131 -23.81163 -23.04885 -21.49433 -20.71577 -20.39333 -19.53313 -18.40833 -17.99644 -17.58635 -16.95850 -16.73454 -16.45593 -16.25146 -16.18495 -15.74671 -15.50972 -15.21739 -14.73474 -14.56082 -14.29584 -14.20786 -13.94655 -13.72668 -13.42802 -13.18054 -13.07371 -13.03003 -12.83302 -12.72791 -12.55785 -12.51517 -12.43826 -12.30228 -12.05649 -11.77100 -11.76534 -11.42036 -11.29243 -10.77131 -10.30779 -10.26263 -9.84312 -8.98920 -8.72916 -8.03992 -6.38564 -0.60545 0.96761 1.28486 1.38728 1.48744 1.51624 1.76433 2.25081 2.29712 2.46738 2.76090 3.02339 3.14496 3.42655 3.63248 3.78052 4.01918 4.10468 4.14470 4.37700 4.42691 4.61123 4.69139 4.79552 4.80468 4.82661 4.91734 4.94336 4.98503 5.00602 5.11548 5.16046 5.31130 5.38411 5.71673 5.75609 5.94140 5.96821 6.19493 6.27776 6.43790 6.81582 6.93324 7.13884 7.88436 8.39379 8.57320 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.004487 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.034203 B = 6238.663568 C = 7718.107103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.154 3.846 3 C -0.136 4.136 4 C 0.455 3.545 5 O -0.444 6.444 6 N -0.658 5.658 7 C 0.351 3.649 8 C -0.349 4.349 9 C -0.037 4.037 10 C -0.336 4.336 11 C 0.239 3.761 12 C -0.466 4.466 13 H 0.079 0.921 14 C 0.018 3.982 15 N -0.677 5.677 16 Si 0.964 3.036 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.258 1.258 20 N -0.500 5.500 21 C -0.111 4.111 22 C -0.543 4.543 23 S 2.542 3.458 24 O -1.016 7.016 25 O -1.006 7.006 26 N -1.090 6.090 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.420 0.580 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.269 0.731 37 H 0.159 0.841 38 H 0.108 0.892 39 H 0.172 0.828 40 H 0.175 0.825 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.845 -3.066 18.395 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.064 3.936 3 C -0.177 4.177 4 C 0.240 3.760 5 O -0.311 6.311 6 N -0.308 5.308 7 C 0.112 3.888 8 C -0.374 4.374 9 C -0.061 4.061 10 C -0.359 4.359 11 C 0.114 3.886 12 C -0.497 4.497 13 H 0.097 0.903 14 C -0.209 4.209 15 N -0.296 5.296 16 Si 0.786 3.214 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.182 1.182 20 N -0.219 5.219 21 C -0.150 4.150 22 C -0.679 4.679 23 S 2.643 3.357 24 O -1.006 7.006 25 O -0.996 6.996 26 N -0.856 5.856 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.257 0.743 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.177 0.823 38 H 0.127 0.873 39 H 0.190 0.810 40 H 0.193 0.807 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.475 -5.579 17.536 19.862 hybrid contribution -0.446 1.412 -1.130 1.863 sum 7.029 -4.167 16.406 18.328 Atomic orbital electron populations 1.22461 0.94428 1.02090 1.03790 1.20555 0.95892 0.92644 0.84546 1.22319 1.03998 0.94744 0.96668 1.21820 0.82609 0.81923 0.89614 1.91038 1.32514 1.63336 1.44175 1.43533 1.46757 1.12255 1.28224 1.19201 0.91983 0.88700 0.88933 1.20990 1.16393 0.93613 1.06376 1.21008 0.93415 0.98895 0.92754 1.21775 1.12486 0.96186 1.05430 1.18815 0.90200 0.89615 0.90018 1.19813 1.26466 0.94164 1.09288 0.90282 1.26832 0.97486 0.99015 0.97530 1.70459 1.27946 1.09840 1.21383 0.85479 0.78988 0.78111 0.78780 1.19576 1.19974 1.18211 1.68687 1.13065 1.35706 1.04475 1.22702 0.93384 1.02953 0.96000 1.30586 1.06865 1.13505 1.16973 1.06929 0.73979 0.74058 0.80784 1.93534 1.52993 1.87003 1.67090 1.93573 1.66896 1.51225 1.87884 1.55137 1.67416 1.49454 1.13634 0.92099 0.93193 0.90113 0.86153 0.84475 0.74306 0.85185 0.85053 0.88400 0.91987 0.82321 0.87341 0.80974 0.80724 0.72844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 8.15 71.98 0.59 -3.72 16 2 C 0.15 3.07 0.83 3.68 0.00 3.07 16 3 C -0.14 -2.44 4.70 29.85 0.14 -2.30 16 4 C 0.46 15.21 7.27 87.66 0.64 15.85 16 5 O -0.44 -19.47 7.57 -3.00 -0.02 -19.49 16 6 N -0.66 -22.29 5.38 -308.38 -1.66 -23.95 16 7 C 0.35 16.09 7.43 133.25 0.99 17.08 16 8 C -0.35 -14.40 9.95 22.71 0.23 -14.17 16 9 C -0.04 -1.58 10.15 22.39 0.23 -1.35 16 10 C -0.34 -17.04 9.83 22.87 0.22 -16.81 16 11 C 0.24 13.66 6.55 40.20 0.26 13.92 16 12 C -0.47 -26.55 9.14 23.47 0.21 -26.34 16 13 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 14 C 0.02 0.95 5.50 85.29 0.47 1.42 16 15 N -0.68 -37.49 8.99 21.84 0.20 -37.29 16 16 Si 0.96 41.39 29.56 68.60 2.03 43.42 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 N -0.50 -27.49 5.74 -186.36 -1.07 -28.56 16 21 C -0.11 -0.97 5.56 31.54 0.18 -0.80 16 22 C -0.54 -4.58 7.66 72.86 0.56 -4.02 16 23 S 2.54 62.84 6.46 -56.49 -0.36 62.47 16 24 O -1.02 -34.06 18.14 -127.79 -2.32 -36.38 16 25 O -1.01 -32.69 18.15 -127.79 -2.32 -35.01 16 26 N -1.09 -30.64 5.65 -152.03 -0.86 -31.50 16 27 H 0.06 2.23 5.35 -2.39 -0.01 2.22 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.14 1.37 8.05 -2.38 -0.02 1.35 16 32 H 0.42 9.80 8.70 -92.71 -0.81 8.99 16 33 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 34 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.27 14.16 8.29 -92.71 -0.77 13.39 16 37 H 0.16 0.06 7.71 -2.39 -0.02 0.04 16 38 H 0.11 0.87 7.83 -2.38 -0.02 0.86 16 39 H 0.17 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.18 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.43 15.57 7.26 -93.11 -0.68 14.89 16 Total: -1.00 -89.15 345.60 -2.06 -91.21 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.39 Total: 33.23 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.72 Total: -18.17 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -3.39 Total: -121.30 kcal Atomic # 8 Polarization: -86.21 SS G_CDS: -4.66 Total: -90.87 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 62.84 SS G_CDS: -0.36 Total: 62.47 kcal Total: -89.15 -2.06 -91.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412271663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.402 kcal (2) G-P(sol) polarization free energy of solvation -89.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds