Wall clock time and date at job start Tue Mar 31 2020 22:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31805 * 119.04333 * 2 1 4 4 C 1.32571 * 120.84978 * 179.97438 * 3 2 1 5 5 C 1.37914 * 119.11748 * 359.97438 * 4 3 2 6 6 C 1.39268 * 118.64243 * 359.97438 * 5 4 3 7 7 O 1.35515 * 120.59965 * 179.97438 * 6 5 4 8 8 N 1.31768 * 119.04595 * 179.97438 * 2 1 3 9 9 C 1.50471 * 109.03920 * 179.97438 * 5 4 3 10 10 N 1.46739 * 107.62485 * 0.02562 * 9 5 4 11 11 S 1.65598 * 126.59043 * 179.97438 * 10 9 5 12 12 O 1.42103 * 104.27588 * 26.09938 * 11 10 9 13 13 O 1.42099 * 104.27577 * 153.95077 * 11 10 9 14 14 C 1.81394 * 104.45137 * 270.02580 * 11 10 9 15 15 C 1.53005 * 109.47133 * 173.98569 * 14 11 10 16 16 C 1.50703 * 115.54856 * 65.19888 * 15 14 11 17 17 H 1.08004 * 119.99962 * 264.78329 * 16 15 14 18 18 C 1.37879 * 119.99826 * 84.78254 * 16 15 14 19 19 N 1.31512 * 120.00375 * 352.22573 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 172.22191 * 18 16 15 21 21 H 1.48499 * 109.47126 * 60.00361 * 20 18 16 22 22 H 1.48500 * 109.47279 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47356 * 300.00336 * 20 18 16 24 24 C 1.52998 * 117.49914 * 279.52971 * 15 14 11 25 25 C 1.53001 * 117.49926 * 210.86696 * 15 14 11 26 26 C 1.46713 * 106.81359 * 359.97438 * 10 9 5 27 27 H 1.09005 * 109.47132 * 270.00171 * 1 2 3 28 28 H 1.08998 * 109.46929 * 30.00091 * 1 2 3 29 29 H 1.08997 * 109.47047 * 150.00555 * 1 2 3 30 30 H 0.96700 * 114.00033 * 270.02154 * 7 6 5 31 31 H 1.09000 * 109.81748 * 119.52673 * 9 5 4 32 32 H 1.09001 * 109.82549 * 240.47443 * 9 5 4 33 33 H 1.09000 * 109.46891 * 293.98315 * 14 11 10 34 34 H 1.09001 * 109.47046 * 53.98592 * 14 11 10 35 35 H 0.96989 * 120.00236 * 185.02335 * 19 18 16 36 36 H 1.09003 * 117.49829 * 359.97438 * 24 15 14 37 37 H 1.09004 * 117.49868 * 145.02017 * 24 15 14 38 38 H 1.08997 * 117.49802 * 214.97931 * 25 15 14 39 39 H 1.09000 * 117.49839 * 359.97438 * 25 15 14 40 40 H 1.09008 * 109.81288 * 240.45378 * 26 10 9 41 41 H 1.09001 * 109.81262 * 119.54934 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1523 0.0000 4 6 3.4719 1.1941 0.0005 5 6 4.1806 0.0110 0.0016 6 6 3.4752 -1.1898 0.0026 7 8 4.1315 -2.3754 0.0032 8 7 2.1467 -1.1520 0.0005 9 6 5.6531 0.3209 0.0013 10 7 5.7999 1.7809 0.0007 11 16 7.2215 2.6301 0.0008 12 8 8.1568 1.7477 -0.6043 13 8 6.8881 3.8716 -0.6047 14 6 7.6099 2.8624 1.7573 15 6 8.9893 3.5103 1.8933 16 6 9.1056 4.9115 1.3507 17 1 9.4719 5.0735 0.3477 18 6 8.7445 5.9866 2.1348 19 7 8.1570 5.7869 3.2944 20 14 9.0897 7.7268 1.5501 21 1 8.3841 7.9665 0.2657 22 1 8.6089 8.6955 2.5678 23 1 10.5511 7.9018 1.3523 24 6 10.2128 2.6003 1.7676 25 6 9.8139 3.1627 3.1343 26 6 4.4449 2.3436 -0.0001 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5137 30 1 4.3220 -2.7200 -0.8800 31 1 6.1188 -0.0967 0.8940 32 1 6.1190 -0.0983 -0.8905 33 1 6.8589 3.5077 2.2132 34 1 7.6116 1.8953 2.2601 35 1 7.8374 6.5420 3.8125 36 1 10.0350 1.5399 1.5885 37 1 11.1020 3.0151 1.2928 38 1 10.4408 3.9472 3.5581 39 1 9.3735 2.4727 3.8541 40 1 4.2980 2.9520 -0.8927 41 1 4.2974 2.9529 0.8916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413427415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:27 Heat of formation + Delta-G solvation = -18.152299 kcal Electronic energy + Delta-G solvation = -27546.175883 eV Core-core repulsion = 23555.398732 eV Total energy + Delta-G solvation = -3990.777152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87385 -38.19357 -37.82379 -36.83125 -36.44711 -35.27504 -33.29682 -32.32439 -32.09661 -29.66600 -28.34980 -28.11883 -25.53993 -24.95581 -22.50447 -22.37647 -21.27349 -19.73385 -19.17653 -18.84625 -18.03114 -16.84394 -16.67165 -16.36560 -16.11070 -15.57456 -15.06370 -14.81338 -14.57178 -14.53051 -14.30235 -13.91791 -13.62022 -13.24192 -13.14580 -12.88773 -12.68082 -12.60449 -12.30247 -12.03377 -11.89833 -11.70896 -11.44680 -11.37364 -11.11690 -10.96206 -10.94220 -10.77364 -10.67875 -10.52791 -10.21102 -9.90982 -9.67954 -9.60005 -9.03291 -8.80907 -8.61511 -8.15715 -6.18827 -4.30408 0.46308 0.60187 0.74458 2.87753 3.01738 3.24325 3.29919 3.32403 3.35971 3.38471 3.89891 4.08634 4.33379 4.39816 4.42822 4.69458 4.82877 5.03321 5.07652 5.13058 5.21677 5.28034 5.28466 5.34800 5.40356 5.53342 5.54138 5.59028 5.78349 5.92637 5.96694 6.18956 6.25470 6.32691 6.53586 6.57778 6.66216 6.92895 7.00611 7.16752 7.33581 7.73001 7.75333 8.13673 8.75219 9.41492 10.88691 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.003370 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.737015 B = 8307.735371 C = 9059.040947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.344 3.656 3 N -0.508 5.508 4 C 0.190 3.810 5 C -0.233 4.233 6 C 0.387 3.613 7 O -0.472 6.472 8 N -0.535 5.535 9 C 0.180 3.820 10 N -1.021 6.021 11 S 2.622 3.378 12 O -0.958 6.958 13 O -0.934 6.934 14 C -0.549 4.549 15 C 0.042 3.958 16 C -0.520 4.520 17 H 0.069 0.931 18 C 0.083 3.917 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.208 4.208 25 C -0.139 4.139 26 C 0.172 3.828 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 -12.965 -5.023 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 N -0.225 5.225 4 C 0.043 3.957 5 C -0.240 4.240 6 C 0.199 3.801 7 O -0.279 6.279 8 N -0.261 5.261 9 C 0.054 3.946 10 N -0.855 5.855 11 S 2.722 3.278 12 O -0.949 6.949 13 O -0.925 6.925 14 C -0.683 4.683 15 C 0.039 3.961 16 C -0.557 4.557 17 H 0.087 0.913 18 C -0.122 4.122 19 N -0.509 5.509 20 Si 0.718 3.282 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.245 4.245 25 C -0.178 4.178 26 C 0.046 3.954 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.269 0.731 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.364 -12.544 -5.058 18.325 hybrid contribution 0.820 0.555 0.199 1.010 sum -11.544 -11.989 -4.859 17.338 Atomic orbital electron populations 1.20606 0.84751 1.04495 1.04309 1.23090 0.97968 0.81485 0.89701 1.67519 1.08336 1.30524 1.16124 1.21862 0.89692 0.95141 0.88962 1.22111 0.99294 0.95033 1.07529 1.18734 0.86354 0.84408 0.90602 1.84721 1.74465 1.34395 1.34359 1.67937 1.08758 1.31617 1.17746 1.19661 0.90297 0.81266 1.03420 1.59267 1.20083 1.14569 1.91621 1.05132 0.70780 0.72824 0.79100 1.93508 1.59863 1.66243 1.75315 1.93557 1.81594 1.42537 1.74797 1.30021 1.09950 1.07438 1.20865 1.18292 0.83303 0.93729 1.00778 1.20490 1.46599 0.88030 1.00585 0.91313 1.24955 0.93679 0.99395 0.94189 1.69956 1.36771 1.31676 1.12478 0.86645 0.79161 0.83424 0.79001 1.19387 1.21072 1.19850 1.23216 1.01143 0.97635 1.02498 1.22562 1.04005 1.01403 0.89868 1.19825 0.78666 0.91887 1.05059 0.89215 0.89082 0.89350 0.73103 0.89485 0.89139 0.84564 0.88154 0.92566 0.90622 0.89407 0.89474 0.91460 0.87585 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.32 36.01 0.37 -0.24 16 2 C 0.34 3.96 7.64 -157.21 -1.20 2.76 16 3 N -0.51 -6.58 10.34 -7.13 -0.07 -6.65 16 4 C 0.19 2.52 7.45 -82.44 -0.61 1.91 16 5 C -0.23 -2.90 6.24 -104.47 -0.65 -3.55 16 6 C 0.39 4.53 7.84 -16.71 -0.13 4.40 16 7 O -0.47 -4.40 13.58 -18.24 -0.25 -4.65 16 8 N -0.54 -6.49 10.36 -10.79 -0.11 -6.61 16 9 C 0.18 2.28 6.94 -5.17 -0.04 2.25 16 10 N -1.02 -15.42 3.64 -116.77 -0.43 -15.84 16 11 S 2.62 50.83 5.42 -107.50 -0.58 50.25 16 12 O -0.96 -19.85 17.65 -57.54 -1.02 -20.86 16 13 O -0.93 -21.19 17.31 -57.54 -1.00 -22.19 16 14 C -0.55 -11.08 6.03 37.16 0.22 -10.86 16 15 C 0.04 0.98 1.32 -155.66 -0.21 0.78 16 16 C -0.52 -13.84 8.18 -34.44 -0.28 -14.12 16 17 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 18 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 19 N -0.87 -23.52 12.98 55.43 0.72 -22.80 16 20 Si 0.89 20.91 29.55 -169.99 -5.02 15.88 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 25 C -0.14 -3.08 9.49 -26.69 -0.25 -3.33 16 26 C 0.17 2.36 6.94 -5.12 -0.04 2.32 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.41 1.66 9.06 45.56 0.41 2.08 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.14 2.86 8.14 -51.92 -0.42 2.44 16 34 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 35 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.11 1.39 8.14 -51.92 -0.42 0.97 16 41 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -33.99 366.88 -10.03 -44.02 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.63 Total: 4.14 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.18 Total: -20.22 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.11 Total: -51.90 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -2.26 Total: -47.70 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 50.83 SS G_CDS: -0.58 Total: 50.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.99 -10.03 -44.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413427415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.865 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds