Wall clock time and date at job start Tue Mar 31 2020 22:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31805 * 119.04333 * 2 1 4 4 C 1.32571 * 120.84978 * 179.97438 * 3 2 1 5 5 C 1.37914 * 119.11748 * 359.97438 * 4 3 2 6 6 C 1.39268 * 118.64243 * 359.97438 * 5 4 3 7 7 O 1.35515 * 120.59965 * 179.97438 * 6 5 4 8 8 N 1.31768 * 119.04595 * 179.97438 * 2 1 3 9 9 C 1.50471 * 109.03920 * 179.97438 * 5 4 3 10 10 N 1.46739 * 107.62485 * 0.02562 * 9 5 4 11 11 S 1.65598 * 126.59043 * 179.97438 * 10 9 5 12 12 O 1.42103 * 104.27588 * 26.09938 * 11 10 9 13 13 O 1.42099 * 104.27577 * 153.95077 * 11 10 9 14 14 C 1.81394 * 104.45137 * 270.02580 * 11 10 9 15 15 C 1.53005 * 109.47133 * 173.98569 * 14 11 10 16 16 C 1.50703 * 115.54856 * 65.19888 * 15 14 11 17 17 H 1.08004 * 119.99962 * 264.78329 * 16 15 14 18 18 C 1.37879 * 119.99826 * 84.78254 * 16 15 14 19 19 N 1.31512 * 120.00375 * 352.22573 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 172.22191 * 18 16 15 21 21 H 1.48499 * 109.47126 * 60.00361 * 20 18 16 22 22 H 1.48500 * 109.47279 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47356 * 300.00336 * 20 18 16 24 24 C 1.52998 * 117.49914 * 279.52971 * 15 14 11 25 25 C 1.53001 * 117.49926 * 210.86696 * 15 14 11 26 26 C 1.46713 * 106.81359 * 359.97438 * 10 9 5 27 27 H 1.09005 * 109.47132 * 270.00171 * 1 2 3 28 28 H 1.08998 * 109.46929 * 30.00091 * 1 2 3 29 29 H 1.08997 * 109.47047 * 150.00555 * 1 2 3 30 30 H 0.96700 * 114.00033 * 270.02154 * 7 6 5 31 31 H 1.09000 * 109.81748 * 119.52673 * 9 5 4 32 32 H 1.09001 * 109.82549 * 240.47443 * 9 5 4 33 33 H 1.09000 * 109.46891 * 293.98315 * 14 11 10 34 34 H 1.09001 * 109.47046 * 53.98592 * 14 11 10 35 35 H 0.96989 * 120.00236 * 185.02335 * 19 18 16 36 36 H 1.09003 * 117.49829 * 359.97438 * 24 15 14 37 37 H 1.09004 * 117.49868 * 145.02017 * 24 15 14 38 38 H 1.08997 * 117.49802 * 214.97931 * 25 15 14 39 39 H 1.09000 * 117.49839 * 359.97438 * 25 15 14 40 40 H 1.09008 * 109.81288 * 240.45378 * 26 10 9 41 41 H 1.09001 * 109.81262 * 119.54934 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1523 0.0000 4 6 3.4719 1.1941 0.0005 5 6 4.1806 0.0110 0.0016 6 6 3.4752 -1.1898 0.0026 7 8 4.1315 -2.3754 0.0032 8 7 2.1467 -1.1520 0.0005 9 6 5.6531 0.3209 0.0013 10 7 5.7999 1.7809 0.0007 11 16 7.2215 2.6301 0.0008 12 8 8.1568 1.7477 -0.6043 13 8 6.8881 3.8716 -0.6047 14 6 7.6099 2.8624 1.7573 15 6 8.9893 3.5103 1.8933 16 6 9.1056 4.9115 1.3507 17 1 9.4719 5.0735 0.3477 18 6 8.7445 5.9866 2.1348 19 7 8.1570 5.7869 3.2944 20 14 9.0897 7.7268 1.5501 21 1 8.3841 7.9665 0.2657 22 1 8.6089 8.6955 2.5678 23 1 10.5511 7.9018 1.3523 24 6 10.2128 2.6003 1.7676 25 6 9.8139 3.1627 3.1343 26 6 4.4449 2.3436 -0.0001 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5137 30 1 4.3220 -2.7200 -0.8800 31 1 6.1188 -0.0967 0.8940 32 1 6.1190 -0.0983 -0.8905 33 1 6.8589 3.5077 2.2132 34 1 7.6116 1.8953 2.2601 35 1 7.8374 6.5420 3.8125 36 1 10.0350 1.5399 1.5885 37 1 11.1020 3.0151 1.2928 38 1 10.4408 3.9472 3.5581 39 1 9.3735 2.4727 3.8541 40 1 4.2980 2.9520 -0.8927 41 1 4.2974 2.9529 0.8916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413427415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:26 Heat of formation + Delta-G solvation = -45.529937 kcal Electronic energy + Delta-G solvation = -27547.363067 eV Core-core repulsion = 23555.398732 eV Total energy + Delta-G solvation = -3991.964335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.77854 -39.12047 -38.69750 -38.57300 -38.07989 -36.91325 -34.21877 -34.08880 -33.18865 -30.56598 -29.91407 -29.13906 -27.49887 -25.91105 -23.49699 -23.25705 -22.98736 -21.43604 -20.36905 -19.73569 -19.34110 -18.44874 -17.90905 -17.57289 -17.37231 -16.88530 -16.61650 -16.22677 -16.02529 -15.62843 -15.50324 -15.13521 -14.92303 -14.52897 -14.16206 -13.85782 -13.75726 -13.68072 -13.42222 -13.29507 -13.17684 -13.11035 -13.05241 -13.01845 -12.96593 -12.83856 -12.45347 -12.25131 -11.95496 -11.84726 -11.71448 -11.56396 -10.89738 -10.80403 -10.54882 -10.52615 -10.03626 -9.72709 -8.19564 -6.34763 -0.77347 -0.41146 -0.31067 1.41019 1.42366 1.49422 1.63835 2.15539 2.32335 2.40087 2.41954 2.87921 2.93083 3.07274 3.14226 3.36058 3.40528 3.53227 3.86696 4.01919 4.21304 4.22297 4.25976 4.34823 4.40644 4.49488 4.51251 4.58235 4.72400 4.76471 4.82026 4.84965 4.87611 4.98571 5.06373 5.22126 5.27861 5.45618 5.59442 5.67957 5.71358 6.21433 6.44363 6.71871 6.85065 7.38204 8.87125 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.003370 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.737015 B = 8307.735371 C = 9059.040947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.339 3.661 3 N -0.525 5.525 4 C 0.180 3.820 5 C -0.239 4.239 6 C 0.394 3.606 7 O -0.473 6.473 8 N -0.546 5.546 9 C 0.174 3.826 10 N -1.018 6.018 11 S 2.647 3.353 12 O -0.973 6.973 13 O -0.975 6.975 14 C -0.549 4.549 15 C 0.009 3.991 16 C -0.537 4.537 17 H 0.052 0.948 18 C 0.044 3.956 19 N -0.892 5.892 20 Si 0.934 3.066 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.194 4.194 25 C -0.139 4.139 26 C 0.166 3.834 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.432 0.568 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.266 0.734 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 -14.704 -4.994 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 N -0.242 5.242 4 C 0.034 3.966 5 C -0.246 4.246 6 C 0.206 3.794 7 O -0.285 6.285 8 N -0.271 5.271 9 C 0.049 3.951 10 N -0.855 5.855 11 S 2.747 3.253 12 O -0.963 6.963 13 O -0.966 6.966 14 C -0.683 4.683 15 C 0.007 3.993 16 C -0.575 4.575 17 H 0.070 0.930 18 C -0.159 4.159 19 N -0.528 5.528 20 Si 0.759 3.241 21 H -0.200 1.200 22 H -0.200 1.200 23 H -0.193 1.193 24 C -0.231 4.231 25 C -0.178 4.178 26 C 0.040 3.960 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.296 0.704 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.253 -14.294 -5.042 20.134 hybrid contribution 1.056 0.980 0.158 1.449 sum -12.197 -13.314 -4.885 18.705 Atomic orbital electron populations 1.20775 0.82060 1.05681 1.05433 1.23870 0.99525 0.80953 0.88369 1.67571 1.08169 1.31395 1.17053 1.21756 0.90070 0.95114 0.89710 1.22057 0.98894 0.95158 1.08489 1.18816 0.86369 0.84845 0.89377 1.84675 1.74090 1.33312 1.36397 1.68076 1.08888 1.31799 1.18371 1.19890 0.90911 0.79468 1.04852 1.58711 1.19600 1.15893 1.91302 1.04059 0.70912 0.71961 0.78379 1.93478 1.61062 1.66319 1.75485 1.93502 1.82542 1.44913 1.75601 1.29915 1.07672 1.08671 1.22005 1.18411 0.85537 0.93313 1.02053 1.20703 1.46484 0.90255 1.00024 0.93019 1.25515 0.93795 1.02078 0.94537 1.70007 1.37448 1.32298 1.13023 0.85976 0.79139 0.80513 0.78453 1.20032 1.20046 1.19320 1.23272 0.99850 0.98620 1.01331 1.22519 1.03603 1.01337 0.90344 1.19911 0.78180 0.92426 1.05465 0.87920 0.88144 0.87882 0.70408 0.87924 0.87912 0.85756 0.84744 0.92516 0.87996 0.89765 0.91549 0.89412 0.87589 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.32 71.24 0.73 -0.28 16 2 C 0.34 7.22 7.64 138.75 1.06 8.28 16 3 N -0.52 -12.99 10.34 -176.49 -1.82 -14.82 16 4 C 0.18 4.60 7.45 42.34 0.32 4.92 16 5 C -0.24 -5.55 6.24 -19.77 -0.12 -5.68 16 6 C 0.39 8.41 7.84 84.78 0.66 9.08 16 7 O -0.47 -7.59 13.58 -88.17 -1.20 -8.78 16 8 N -0.55 -12.15 10.36 -300.68 -3.12 -15.26 16 9 C 0.17 4.07 6.94 85.52 0.59 4.67 16 10 N -1.02 -29.73 3.64 -523.36 -1.91 -31.64 16 11 S 2.65 101.24 5.42 -56.49 -0.31 100.94 16 12 O -0.97 -39.14 17.65 -127.65 -2.25 -41.39 16 13 O -0.98 -44.91 17.31 -127.65 -2.21 -47.12 16 14 C -0.55 -21.67 6.03 71.98 0.43 -21.23 16 15 C 0.01 0.43 1.32 -52.93 -0.07 0.36 16 16 C -0.54 -28.96 8.18 25.60 0.21 -28.75 16 17 H 0.05 2.87 7.83 -2.91 -0.02 2.85 16 18 C 0.04 2.36 5.38 84.66 0.46 2.82 16 19 N -0.89 -48.29 12.98 21.45 0.28 -48.01 16 20 Si 0.93 43.14 29.55 68.60 2.03 45.17 16 21 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.19 -7.93 9.96 30.62 0.30 -7.62 16 25 C -0.14 -6.02 9.49 30.62 0.29 -5.73 16 26 C 0.17 4.49 6.94 85.56 0.59 5.09 16 27 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.43 2.29 9.06 -74.06 -0.67 1.61 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.12 5.21 8.14 -2.39 -0.02 5.20 16 34 H 0.13 4.23 8.09 -2.39 -0.02 4.21 16 35 H 0.27 13.75 8.32 -92.72 -0.77 12.98 16 36 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 41 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -72.29 366.88 -4.64 -76.93 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.40 Total: 18.08 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 5.46 Total: -34.09 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -6.57 Total: -109.73 kcal Atomic # 8 Polarization: -91.64 SS G_CDS: -5.66 Total: -97.30 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 101.24 SS G_CDS: -0.31 Total: 100.94 kcal Total: -72.29 -4.64 -76.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413427415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.403 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds