Wall clock time and date at job start Tue Mar 31 2020 22:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 S 1.81396 * 109.47320 * 60.00278 * 12 2 1 14 14 O 1.42099 * 110.54249 * 291.62512 * 13 12 2 15 15 O 1.42101 * 110.54118 * 68.37303 * 13 12 2 16 16 N 1.65600 * 104.45054 * 179.97438 * 13 12 2 17 17 C 1.46499 * 119.99834 * 64.99907 * 16 13 12 18 18 H 1.08997 * 109.38469 * 25.00142 * 17 16 13 19 19 C 1.52584 * 109.38172 * 144.78970 * 17 16 13 20 20 C 1.52591 * 110.64325 * 190.14250 * 19 17 16 21 21 C 1.53039 * 109.98581 * 290.01728 * 20 19 17 22 22 S 1.81662 * 109.00038 * 63.64517 * 21 20 19 23 23 O 1.42098 * 108.66478 * 60.03089 * 22 21 20 24 24 O 1.42097 * 108.66456 * 191.27791 * 22 21 20 25 25 C 1.53033 * 109.38395 * 265.20763 * 17 16 13 26 26 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 27 27 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 28 28 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 31 31 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 32 32 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 35 35 H 0.97001 * 119.99887 * 244.99837 * 16 13 12 36 36 H 1.08999 * 109.24932 * 310.43969 * 19 17 16 37 37 H 1.09001 * 109.24480 * 69.84786 * 19 17 16 38 38 H 1.09004 * 109.38208 * 50.17209 * 20 19 17 39 39 H 1.09003 * 109.38784 * 169.85805 * 20 19 17 40 40 H 1.09002 * 109.54636 * 183.50437 * 21 20 19 41 41 H 1.08996 * 109.54659 * 303.68916 * 21 20 19 42 42 H 1.09003 * 109.55499 * 296.04902 * 25 17 16 43 43 H 1.09004 * 109.55125 * 56.34365 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.1571 -2.2793 3.6038 10 1 3.1606 -0.1762 4.8105 11 1 1.1811 -1.5771 4.8221 12 6 2.0399 -0.7213 -1.2492 13 16 1.4354 0.1338 -2.7303 14 8 0.0280 -0.0183 -2.8544 15 8 2.0480 1.4100 -2.8543 16 7 2.0542 -0.7401 -3.9936 17 6 1.6254 -2.1247 -4.2059 18 1 0.6366 -2.2681 -3.7702 19 6 1.5657 -2.4124 -5.7031 20 6 0.8879 -3.7539 -5.9666 21 6 1.7926 -4.8973 -5.5014 22 16 2.0176 -4.7791 -3.7027 23 8 0.7454 -4.8785 -3.0777 24 8 3.0546 -5.6698 -3.3146 25 6 2.6197 -3.0733 -3.5324 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7164 1.1668 3.4844 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 2.7005 -0.3351 -4.5929 36 1 1.0022 -1.6219 -6.1988 37 1 2.5786 -2.4368 -6.1050 38 1 -0.0559 -3.7953 -5.4229 39 1 0.6937 -3.8577 -7.0341 40 1 1.3297 -5.8525 -5.7491 41 1 2.7603 -4.8215 -5.9973 42 1 3.5946 -2.9797 -4.0109 43 1 2.7051 -2.8217 -2.4752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423671179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:40 Heat of formation + Delta-G solvation = -147.008685 kcal Electronic energy + Delta-G solvation = -27461.247207 eV Core-core repulsion = 23568.033623 eV Total energy + Delta-G solvation = -3893.213584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.47273 -37.10613 -36.60910 -36.32965 -36.22098 -35.41433 -34.17906 -31.71344 -30.16858 -28.13974 -26.68293 -25.74100 -25.24387 -23.55684 -21.55121 -19.70485 -19.26209 -18.77137 -17.55619 -17.31994 -16.65034 -16.22102 -15.92679 -15.67111 -15.61729 -15.18424 -14.78236 -14.65061 -14.51456 -13.83920 -13.45625 -13.18794 -13.05800 -12.77148 -12.54381 -12.33873 -12.26050 -12.20983 -12.12744 -11.78385 -11.66071 -11.57443 -11.32338 -11.24216 -11.12472 -11.09159 -10.96123 -10.75190 -10.51917 -10.39238 -10.31026 -10.14671 -9.82718 -9.68043 -9.41929 -8.71435 -8.41481 -6.04904 -4.16903 -0.27149 0.72552 2.36787 3.03765 3.25642 3.34289 3.37263 3.40513 3.60607 4.02427 4.12604 4.20301 4.27192 4.34280 4.37548 4.56847 4.64438 4.83636 4.84993 5.02632 5.12475 5.20682 5.27143 5.43680 5.48486 5.57866 5.64340 5.68950 5.84289 6.30869 6.66465 6.76551 6.86100 6.91089 7.02387 7.29245 7.47810 7.66725 7.96314 8.07101 8.30555 8.81590 9.48970 10.96497 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.004461 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.715436 B = 6275.778491 C = 7718.895528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.589 4.589 13 S 2.588 3.412 14 O -0.958 6.958 15 O -0.960 6.960 16 N -1.117 6.117 17 C 0.164 3.836 18 H 0.114 0.886 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.607 4.607 22 S 2.418 3.582 23 O -0.925 6.925 24 O -0.939 6.939 25 C -0.644 4.644 26 H 0.096 0.904 27 H 0.028 0.972 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.262 0.738 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.414 0.586 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.145 0.855 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -8.389 -19.079 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.722 4.722 13 S 2.686 3.314 14 O -0.948 6.948 15 O -0.951 6.951 16 N -0.872 5.872 17 C 0.054 3.946 18 H 0.132 0.868 19 C -0.183 4.183 20 C -0.149 4.149 21 C -0.736 4.736 22 S 2.598 3.402 23 O -0.923 6.923 24 O -0.936 6.936 25 C -0.774 4.774 26 H 0.114 0.886 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.122 -8.207 -18.283 20.152 hybrid contribution 1.426 -0.334 0.336 1.503 sum 3.548 -8.541 -17.947 20.190 Atomic orbital electron populations 1.22293 0.96739 1.00888 1.02392 1.17946 0.92967 0.92185 0.88900 1.22277 0.99711 0.97772 1.02368 1.20971 1.31857 1.12042 0.89343 0.92205 1.24931 0.94846 0.94943 0.98956 1.69809 1.36318 1.22540 1.23420 0.86480 0.78707 0.79609 0.82871 1.19787 1.20970 1.20873 1.30678 1.11536 1.12746 1.17237 1.05838 0.75089 0.74806 0.75652 1.93561 1.29514 1.86318 1.85396 1.93567 1.78081 1.37768 1.85655 1.55962 1.60854 1.22519 1.47913 1.20432 0.96783 0.81109 0.96269 0.86800 1.22009 1.03217 0.98483 0.94595 1.21267 0.98432 0.90604 1.04607 1.30299 1.09713 1.07929 1.25681 1.08128 0.75937 0.77611 0.78534 1.93642 1.40532 1.85412 1.72667 1.93610 1.58461 1.60699 1.80783 1.31148 1.11604 1.22522 1.12148 0.88574 0.95322 0.94211 0.94460 0.95436 0.88526 0.92771 0.85957 0.86416 0.75233 0.88454 0.89916 0.89009 0.88843 0.84583 0.84757 0.83670 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 7.78 37.16 0.29 -3.75 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.88 16 3 C -0.16 -3.96 7.77 37.16 0.29 -3.67 16 4 C -0.50 -13.10 8.01 -34.44 -0.28 -13.38 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.99 9.35 55.43 0.52 -23.47 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C -0.59 -11.06 4.06 37.16 0.15 -10.91 16 13 S 2.59 45.12 4.47 -107.50 -0.48 44.64 16 14 O -0.96 -19.14 15.01 -57.54 -0.86 -20.00 16 15 O -0.96 -19.11 15.70 -57.54 -0.90 -20.01 16 16 N -1.12 -12.83 5.35 -5.06 -0.03 -12.86 16 17 C 0.16 1.59 2.52 -68.13 -0.17 1.42 16 18 H 0.11 1.24 7.34 -51.93 -0.38 0.86 16 19 C -0.14 -0.87 5.14 -27.15 -0.14 -1.01 16 20 C -0.11 -0.58 5.73 -26.92 -0.15 -0.74 16 21 C -0.61 -3.11 6.35 37.18 0.24 -2.87 16 22 S 2.42 23.02 5.31 -107.50 -0.57 22.45 16 23 O -0.93 -12.57 17.94 -57.82 -1.04 -13.60 16 24 O -0.94 -12.12 18.10 -57.82 -1.05 -13.16 16 25 C -0.64 -5.63 5.92 37.17 0.22 -5.41 16 26 H 0.10 2.54 6.08 -51.93 -0.32 2.22 16 27 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 31 H 0.10 2.53 6.06 -51.93 -0.31 2.22 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.12 1.99 6.83 -51.92 -0.35 1.63 16 35 H 0.41 3.61 8.80 -34.47 -0.30 3.30 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 38 H 0.09 0.55 8.01 -51.93 -0.42 0.13 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.15 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.15 1.43 5.70 -51.92 -0.30 1.14 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -37.19 350.06 -10.18 -47.37 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.29 Total: 4.47 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 0.27 Total: -36.81 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.49 Total: -36.33 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -3.85 Total: -66.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 68.14 SS G_CDS: -1.05 Total: 67.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.19 -10.18 -47.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423671179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.642 kcal (2) G-P(sol) polarization free energy of solvation -37.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds