Wall clock time and date at job start Tue Mar 31 2020 22:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 S 1.81396 * 109.47320 * 60.00278 * 12 2 1 14 14 O 1.42099 * 110.54249 * 291.62512 * 13 12 2 15 15 O 1.42101 * 110.54118 * 68.37303 * 13 12 2 16 16 N 1.65600 * 104.45054 * 179.97438 * 13 12 2 17 17 C 1.46499 * 119.99834 * 64.99907 * 16 13 12 18 18 H 1.08997 * 109.38469 * 25.00142 * 17 16 13 19 19 C 1.52584 * 109.38172 * 144.78970 * 17 16 13 20 20 C 1.52591 * 110.64325 * 190.14250 * 19 17 16 21 21 C 1.53039 * 109.98581 * 290.01728 * 20 19 17 22 22 S 1.81662 * 109.00038 * 63.64517 * 21 20 19 23 23 O 1.42098 * 108.66478 * 60.03089 * 22 21 20 24 24 O 1.42097 * 108.66456 * 191.27791 * 22 21 20 25 25 C 1.53033 * 109.38395 * 265.20763 * 17 16 13 26 26 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 27 27 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 28 28 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 31 31 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 32 32 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 35 35 H 0.97001 * 119.99887 * 244.99837 * 16 13 12 36 36 H 1.08999 * 109.24932 * 310.43969 * 19 17 16 37 37 H 1.09001 * 109.24480 * 69.84786 * 19 17 16 38 38 H 1.09004 * 109.38208 * 50.17209 * 20 19 17 39 39 H 1.09003 * 109.38784 * 169.85805 * 20 19 17 40 40 H 1.09002 * 109.54636 * 183.50437 * 21 20 19 41 41 H 1.08996 * 109.54659 * 303.68916 * 21 20 19 42 42 H 1.09003 * 109.55499 * 296.04902 * 25 17 16 43 43 H 1.09004 * 109.55125 * 56.34365 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.1571 -2.2793 3.6038 10 1 3.1606 -0.1762 4.8105 11 1 1.1811 -1.5771 4.8221 12 6 2.0399 -0.7213 -1.2492 13 16 1.4354 0.1338 -2.7303 14 8 0.0280 -0.0183 -2.8544 15 8 2.0480 1.4100 -2.8543 16 7 2.0542 -0.7401 -3.9936 17 6 1.6254 -2.1247 -4.2059 18 1 0.6366 -2.2681 -3.7702 19 6 1.5657 -2.4124 -5.7031 20 6 0.8879 -3.7539 -5.9666 21 6 1.7926 -4.8973 -5.5014 22 16 2.0176 -4.7791 -3.7027 23 8 0.7454 -4.8785 -3.0777 24 8 3.0546 -5.6698 -3.3146 25 6 2.6197 -3.0733 -3.5324 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7164 1.1668 3.4844 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 2.7005 -0.3351 -4.5929 36 1 1.0022 -1.6219 -6.1988 37 1 2.5786 -2.4368 -6.1050 38 1 -0.0559 -3.7953 -5.4229 39 1 0.6937 -3.8577 -7.0341 40 1 1.3297 -5.8525 -5.7491 41 1 2.7603 -4.8215 -5.9973 42 1 3.5946 -2.9797 -4.0109 43 1 2.7051 -2.8217 -2.4752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423671179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:39 Heat of formation + Delta-G solvation = -177.945366 kcal Electronic energy + Delta-G solvation = -27462.588722 eV Core-core repulsion = 23568.033623 eV Total energy + Delta-G solvation = -3894.555099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.17219 -38.16217 -38.11762 -37.91086 -37.06445 -36.94202 -34.85439 -33.67160 -30.96666 -28.84049 -28.13232 -27.70733 -27.26963 -24.18381 -22.17627 -21.37409 -20.46713 -19.72046 -18.84868 -18.17274 -17.91607 -17.38527 -17.08091 -16.93783 -16.64872 -16.58370 -15.96033 -15.79528 -15.21926 -15.01015 -14.69011 -14.48048 -14.36698 -13.92842 -13.84375 -13.62804 -13.36076 -13.21203 -13.09456 -13.07315 -12.94134 -12.91300 -12.79098 -12.53354 -12.36544 -12.25520 -12.20959 -12.15874 -11.96983 -11.95181 -11.83164 -11.59100 -11.41306 -11.06042 -10.76262 -10.45858 -10.43715 -8.05538 -6.23714 -0.95427 -0.66370 1.40361 1.43887 1.53062 1.65761 1.92249 2.41963 2.71712 2.79311 2.97334 3.16653 3.24885 3.47795 3.57952 3.76911 3.81369 3.95317 4.01187 4.09737 4.25195 4.34074 4.47461 4.56795 4.69820 4.80586 4.82265 4.84622 4.92485 4.98574 5.06515 5.09514 5.22164 5.34150 5.36697 5.49174 5.62977 5.96409 6.09064 6.14643 6.32143 6.80887 7.44639 8.94486 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.004461 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.715436 B = 6275.778491 C = 7718.895528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 C -0.158 4.158 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.906 5.906 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.284 1.284 12 C -0.601 4.601 13 S 2.610 3.390 14 O -0.987 6.987 15 O -0.986 6.986 16 N -1.094 6.094 17 C 0.149 3.851 18 H 0.094 0.906 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.572 4.572 22 S 2.404 3.596 23 O -0.983 6.983 24 O -0.983 6.983 25 C -0.645 4.645 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.261 0.739 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.432 0.568 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.187 0.813 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 -9.497 -22.282 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.067 3.933 3 C -0.216 4.216 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.545 5.545 8 Si 0.777 3.223 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.210 1.210 12 C -0.732 4.732 13 S 2.707 3.293 14 O -0.977 6.977 15 O -0.976 6.976 16 N -0.856 5.856 17 C 0.040 3.960 18 H 0.112 0.888 19 C -0.182 4.182 20 C -0.154 4.154 21 C -0.706 4.706 22 S 2.591 3.409 23 O -0.980 6.980 24 O -0.980 6.980 25 C -0.776 4.776 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.192 0.808 42 H 0.204 0.796 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.718 -9.320 -21.424 23.658 hybrid contribution 0.922 -0.003 1.188 1.504 sum 4.640 -9.323 -20.236 22.759 Atomic orbital electron populations 1.22225 0.97789 1.00425 1.01516 1.17920 0.92322 0.92297 0.90797 1.22189 0.99893 0.98121 1.01426 1.21328 1.31710 1.12165 0.90515 0.92050 1.25641 0.95202 0.95624 1.01563 1.69942 1.37166 1.23571 1.23784 0.85609 0.78094 0.78741 0.79813 1.19210 1.20680 1.21000 1.30680 1.13020 1.13152 1.16381 1.04808 0.74360 0.74311 0.75830 1.93524 1.31566 1.86731 1.85843 1.93522 1.78341 1.39677 1.86083 1.55348 1.61059 1.23197 1.45969 1.20778 0.96108 0.79723 0.99420 0.88835 1.22103 1.05832 0.99031 0.91214 1.21397 0.97721 0.89928 1.06376 1.30058 1.12242 1.09123 1.19164 1.08175 0.74213 0.77378 0.81169 1.93571 1.42425 1.86174 1.75809 1.93552 1.59210 1.62085 1.83110 1.31136 1.13485 1.21223 1.11760 0.91003 0.94583 0.94394 0.93950 0.94762 0.91032 0.92899 0.83809 0.85175 0.73046 0.87917 0.86124 0.90389 0.85442 0.82667 0.80774 0.79576 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.16 7.78 71.98 0.56 -7.60 16 2 C 0.07 3.32 0.52 -52.93 -0.03 3.30 16 3 C -0.16 -7.81 7.77 71.98 0.56 -7.25 16 4 C -0.52 -27.33 8.01 25.60 0.21 -27.12 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 1.03 5.15 84.66 0.44 1.47 16 7 N -0.91 -50.60 9.35 21.45 0.20 -50.39 16 8 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 C -0.60 -22.40 4.06 71.98 0.29 -22.10 16 13 S 2.61 88.90 4.47 -56.49 -0.25 88.65 16 14 O -0.99 -39.42 15.01 -127.65 -1.92 -41.34 16 15 O -0.99 -38.32 15.70 -127.65 -2.00 -40.32 16 16 N -1.09 -22.37 5.35 -169.92 -0.91 -23.28 16 17 C 0.15 2.53 2.52 44.86 0.11 2.64 16 18 H 0.09 1.99 7.34 -2.39 -0.02 1.98 16 19 C -0.14 -1.07 5.14 30.32 0.16 -0.92 16 20 C -0.12 -0.70 5.73 30.47 0.17 -0.52 16 21 C -0.57 -3.28 6.35 72.00 0.46 -2.83 16 22 S 2.40 43.03 5.31 -56.49 -0.30 42.73 16 23 O -0.98 -27.60 17.94 -127.38 -2.28 -29.89 16 24 O -0.98 -24.87 18.10 -127.38 -2.31 -27.17 16 25 C -0.65 -9.84 5.92 71.99 0.43 -9.41 16 26 H 0.07 3.95 6.08 -2.39 -0.01 3.93 16 27 H 0.04 1.71 5.46 -2.39 -0.01 1.70 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 31 H 0.07 3.87 6.06 -2.39 -0.01 3.85 16 32 H 0.26 13.96 8.31 -92.70 -0.77 13.18 16 33 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 34 H 0.13 4.44 6.83 -2.39 -0.02 4.42 16 35 H 0.43 5.94 8.80 -96.75 -0.85 5.09 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.12 0.04 8.09 -2.39 -0.02 0.02 16 38 H 0.08 0.74 8.01 -2.38 -0.02 0.72 16 39 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.19 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.13 2.45 5.70 -2.39 -0.01 2.43 16 Total: -1.00 -84.54 350.06 -4.21 -88.76 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.18 Total: 17.56 kcal Atomic # 6 Polarization: -73.70 SS G_CDS: 3.35 Total: -70.35 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -0.71 Total: -73.68 kcal Atomic # 8 Polarization: -130.21 SS G_CDS: -8.51 Total: -138.72 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 131.93 SS G_CDS: -0.55 Total: 131.38 kcal Total: -84.54 -4.21 -88.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423671179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.189 kcal (2) G-P(sol) polarization free energy of solvation -84.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds