Wall clock time and date at job start Tue Mar 31 2020 22:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46816 * 2 1 4 4 C 1.50699 * 109.47047 * 119.99863 * 2 1 3 5 5 H 1.07997 * 119.99387 * 125.40926 * 4 2 1 6 6 C 1.37876 * 120.00401 * 305.41522 * 4 2 1 7 7 N 1.31505 * 119.99971 * 150.78854 * 6 4 2 8 8 Si 1.86798 * 119.99769 * 330.79017 * 6 4 2 9 9 H 1.48496 * 109.47060 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47046 * 299.99906 * 8 6 4 11 11 H 1.48505 * 109.47054 * 59.99843 * 8 6 4 12 12 C 1.53000 * 109.46881 * 240.00418 * 2 1 3 13 13 S 1.81396 * 109.47540 * 60.00155 * 12 2 1 14 14 O 1.42106 * 110.54130 * 291.62371 * 13 12 2 15 15 O 1.42097 * 110.54341 * 68.36819 * 13 12 2 16 16 N 1.65602 * 104.45052 * 179.97438 * 13 12 2 17 17 C 1.46498 * 120.00005 * 64.99862 * 16 13 12 18 18 H 1.09000 * 112.84635 * 346.19569 * 17 16 13 19 19 C 1.53778 * 113.61401 * 117.50264 * 17 16 13 20 20 C 1.53784 * 87.08157 * 89.11486 * 19 17 16 21 21 H 1.08991 * 113.68704 * 270.87183 * 20 19 17 22 22 S 1.81397 * 113.61288 * 139.97957 * 20 19 17 23 23 C 1.81395 * 101.92203 * 82.50331 * 22 20 19 24 24 O 1.42104 * 108.57610 * 196.99202 * 22 20 19 25 25 O 1.42097 * 108.57997 * 328.01723 * 22 20 19 26 26 C 1.53781 * 113.61390 * 215.00051 * 17 16 13 27 27 H 1.08995 * 109.47488 * 292.48046 * 1 2 3 28 28 H 1.09004 * 109.47145 * 52.48321 * 1 2 3 29 29 H 1.09004 * 109.47187 * 172.47878 * 1 2 3 30 30 H 1.08998 * 109.47057 * 183.42124 * 3 2 1 31 31 H 1.08996 * 109.47162 * 303.42696 * 3 2 1 32 32 H 1.09004 * 109.46823 * 63.42552 * 3 2 1 33 33 H 0.97010 * 120.00511 * 354.96195 * 7 6 4 34 34 H 1.09010 * 109.46630 * 179.97438 * 12 2 1 35 35 H 1.08993 * 109.47287 * 299.99438 * 12 2 1 36 36 H 0.96998 * 119.99430 * 245.00008 * 16 13 12 37 37 H 1.08998 * 113.61004 * 203.66524 * 19 17 16 38 38 H 1.08997 * 113.61429 * 334.56228 * 19 17 16 39 39 H 1.09001 * 109.46937 * 59.99907 * 23 22 20 40 40 H 1.09004 * 109.47516 * 179.97438 * 23 22 20 41 41 H 1.09002 * 109.47474 * 299.99783 * 23 22 20 42 42 H 1.09000 * 113.61490 * 25.42917 * 26 17 16 43 43 H 1.08998 * 113.61713 * 156.24913 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7232 -1.5348 1.1337 6 6 1.6098 -0.3080 2.4797 7 7 1.5397 -1.1791 3.4623 8 14 1.1368 1.4746 2.7763 9 1 0.7201 1.6474 4.1910 10 1 2.3025 2.3498 2.4926 11 1 0.0112 1.8437 1.8806 12 6 2.0399 -0.7212 -1.2493 13 16 1.4354 0.1340 -2.7304 14 8 0.0279 -0.0182 -2.8544 15 8 2.0479 1.4102 -2.8543 16 7 2.0541 -0.7399 -3.9937 17 6 1.6254 -2.1245 -4.2061 18 1 1.0942 -2.5392 -3.3494 19 6 0.9057 -2.3478 -5.5466 20 6 2.2907 -2.6273 -6.1538 21 1 2.7925 -1.7354 -6.5288 22 16 2.2988 -3.9941 -7.3463 23 6 1.7314 -3.1732 -8.8611 24 8 3.6409 -4.4200 -7.5376 25 8 1.3187 -4.9446 -6.9523 26 6 2.7396 -3.0391 -4.7418 27 1 -0.3634 0.3929 0.9495 28 1 -0.3634 0.6259 -0.8151 29 1 -0.3634 -1.0189 -0.1345 30 1 3.1282 1.4432 -0.0613 31 1 1.6273 1.9738 -0.8576 32 1 1.7275 1.9383 0.9191 33 1 1.7146 -2.1179 3.2917 34 1 3.1300 -0.7207 -1.2495 35 1 1.6767 -1.7488 -1.2493 36 1 2.7004 -0.3348 -4.5929 37 1 0.2451 -3.2148 -5.5483 38 1 0.4290 -1.4504 -5.9410 39 1 2.4245 -2.3735 -9.1224 40 1 1.6908 -3.8982 -9.6740 41 1 0.7385 -2.7544 -8.6974 42 1 3.7435 -2.6997 -4.4865 43 1 2.5812 -4.0949 -4.5223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424548652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:17 Heat of formation + Delta-G solvation = -106.142892 kcal Electronic energy + Delta-G solvation = -26565.866422 eV Core-core repulsion = 22674.424912 eV Total energy + Delta-G solvation = -3891.441510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.65282 -37.32149 -36.77480 -36.69689 -36.37182 -35.57360 -32.98086 -32.06309 -30.04667 -27.40940 -26.39624 -26.24512 -25.89010 -24.57056 -20.57594 -20.13200 -19.30985 -18.82479 -17.94890 -17.15351 -16.82882 -16.53383 -16.46253 -16.22649 -15.67224 -15.23403 -14.76976 -14.53034 -13.93605 -13.67841 -13.54017 -13.46423 -13.42633 -13.24541 -13.06381 -12.79623 -12.46597 -12.44751 -12.33293 -12.08205 -11.82699 -11.69758 -11.57332 -11.49762 -11.40730 -11.30497 -11.18088 -11.03458 -10.61614 -10.38587 -10.22950 -10.02242 -9.98280 -9.57342 -9.07573 -8.98201 -8.20630 -6.61195 -4.18693 -0.38952 0.57838 2.31656 2.87683 3.15210 3.32278 3.37903 3.42584 3.58786 3.79801 3.93310 4.00508 4.26320 4.35079 4.39320 4.40370 4.52571 4.60139 4.84383 5.01916 5.09909 5.14953 5.20681 5.28146 5.34753 5.45160 5.48950 5.51481 5.93776 5.98309 6.18293 6.27951 6.40175 6.46698 6.67365 6.83786 6.86242 7.12805 7.30477 7.96705 8.24880 8.75314 9.43889 10.74305 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.002882 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.854654 B = 9712.740226 C =10175.428903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.061 3.939 3 C -0.180 4.180 4 C -0.605 4.605 5 H 0.062 0.938 6 C 0.046 3.954 7 N -0.883 5.883 8 Si 1.038 2.962 9 H -0.295 1.295 10 H -0.283 1.283 11 H -0.273 1.273 12 C -0.572 4.572 13 S 2.587 3.413 14 O -0.958 6.958 15 O -0.963 6.963 16 N -1.109 6.109 17 C 0.142 3.858 18 H 0.114 0.886 19 C -0.127 4.127 20 C -0.607 4.607 21 H 0.151 0.849 22 S 2.424 3.576 23 C -0.656 4.656 24 O -0.941 6.941 25 O -0.935 6.935 26 C -0.117 4.117 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.273 0.727 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -2.713 -22.718 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 C -0.237 4.237 4 C -0.643 4.643 5 H 0.081 0.919 6 C -0.162 4.162 7 N -0.514 5.514 8 Si 0.870 3.130 9 H -0.223 1.223 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.705 4.705 13 S 2.685 3.315 14 O -0.948 6.948 15 O -0.953 6.953 16 N -0.864 5.864 17 C 0.031 3.969 18 H 0.132 0.868 19 C -0.167 4.167 20 C -0.716 4.716 21 H 0.169 0.831 22 S 2.607 3.393 23 C -0.805 4.805 24 O -0.938 6.938 25 O -0.932 6.932 26 C -0.157 4.157 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.246 0.754 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.036 -1.872 -21.436 21.517 hybrid contribution 1.161 -0.523 -1.528 1.989 sum 1.125 -2.395 -22.964 23.116 Atomic orbital electron populations 1.22632 0.97038 1.01479 1.01688 1.18183 0.92393 0.91563 0.92121 1.22783 1.02152 0.98169 1.00631 1.21574 1.32787 1.19869 0.90038 0.91946 1.25676 0.93271 1.04734 0.92530 1.70857 1.40538 1.03995 1.35971 0.84373 0.77169 0.76541 0.74923 1.22316 1.21046 1.20029 1.30399 1.11726 1.12861 1.15533 1.05876 0.75097 0.74774 0.75764 1.93573 1.29525 1.86301 1.85430 1.93568 1.78117 1.37894 1.85743 1.55710 1.60425 1.22844 1.47399 1.21401 0.95186 0.81798 0.98473 0.86828 1.23272 0.92247 1.04736 0.96445 1.31732 1.07736 1.19478 1.12644 0.83065 1.07772 0.75533 0.77778 0.78257 1.30245 1.13232 1.15011 1.22029 1.93598 1.35475 1.79637 1.85120 1.93606 1.61869 1.56312 1.81425 1.23084 1.01424 1.01402 0.89809 0.91447 0.94362 0.92529 0.91999 0.93735 0.92872 0.91733 0.85766 0.85881 0.75414 0.86531 0.88660 0.85435 0.85439 0.85155 0.88340 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 7.38 37.16 0.27 -3.51 16 2 C 0.06 1.36 0.52 -155.66 -0.08 1.28 16 3 C -0.18 -3.96 7.33 37.16 0.27 -3.68 16 4 C -0.60 -15.90 8.42 -34.44 -0.29 -16.19 16 5 H 0.06 1.73 7.99 -52.49 -0.42 1.31 16 6 C 0.05 1.28 5.05 -17.82 -0.09 1.19 16 7 N -0.88 -25.83 13.69 55.43 0.76 -25.07 16 8 Si 1.04 24.92 23.47 -169.99 -3.99 20.93 16 9 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.43 6.72 56.52 0.38 -6.05 16 11 H -0.27 -6.09 5.79 56.52 0.33 -5.76 16 12 C -0.57 -10.00 5.01 37.16 0.19 -9.81 16 13 S 2.59 41.06 4.43 -107.50 -0.48 40.59 16 14 O -0.96 -17.40 15.60 -57.54 -0.90 -18.30 16 15 O -0.96 -17.58 15.77 -57.54 -0.91 -18.48 16 16 N -1.11 -11.97 5.62 -4.20 -0.02 -11.99 16 17 C 0.14 1.33 4.31 -67.12 -0.29 1.04 16 18 H 0.11 1.04 7.74 -51.93 -0.40 0.64 16 19 C -0.13 -0.94 7.42 -25.92 -0.19 -1.13 16 20 C -0.61 -3.62 3.99 -25.92 -0.10 -3.72 16 21 H 0.15 0.52 8.11 -51.93 -0.42 0.09 16 22 S 2.42 16.32 5.34 -107.50 -0.57 15.74 16 23 C -0.66 -2.32 10.62 101.05 1.07 -1.24 16 24 O -0.94 -9.94 18.10 -57.83 -1.05 -10.99 16 25 O -0.93 -9.49 17.19 -57.83 -0.99 -10.48 16 26 C -0.12 -0.88 7.45 -25.92 -0.19 -1.07 16 27 H 0.07 1.55 4.47 -51.93 -0.23 1.32 16 28 H 0.04 0.78 6.02 -51.93 -0.31 0.47 16 29 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.04 0.91 5.72 -51.93 -0.30 0.61 16 32 H 0.05 1.19 2.28 -51.93 -0.12 1.08 16 33 H 0.27 7.85 8.73 -40.82 -0.36 7.50 16 34 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 35 H 0.12 1.94 7.83 -51.93 -0.41 1.53 16 36 H 0.41 3.48 8.75 -34.47 -0.30 3.17 16 37 H 0.12 0.77 7.36 -51.93 -0.38 0.39 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 40 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -37.89 354.55 -8.58 -46.47 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.34 Total: 3.11 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 0.57 Total: -36.86 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.74 Total: -37.06 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -3.85 Total: -58.26 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -3.99 Total: 20.93 kcal Atomic # 16 Polarization: 57.38 SS G_CDS: -1.05 Total: 56.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.89 -8.58 -46.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424548652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.669 kcal (2) G-P(sol) polarization free energy of solvation -37.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds