Wall clock time and date at job start Tue Mar 31 2020 22:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46816 * 2 1 4 4 C 1.50699 * 109.47047 * 119.99863 * 2 1 3 5 5 H 1.07997 * 119.99387 * 125.40926 * 4 2 1 6 6 C 1.37876 * 120.00401 * 305.41522 * 4 2 1 7 7 N 1.31505 * 119.99971 * 150.78854 * 6 4 2 8 8 Si 1.86798 * 119.99769 * 330.79017 * 6 4 2 9 9 H 1.48496 * 109.47060 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47046 * 299.99906 * 8 6 4 11 11 H 1.48505 * 109.47054 * 59.99843 * 8 6 4 12 12 C 1.53000 * 109.46881 * 240.00418 * 2 1 3 13 13 S 1.81396 * 109.47540 * 60.00155 * 12 2 1 14 14 O 1.42106 * 110.54130 * 291.62371 * 13 12 2 15 15 O 1.42097 * 110.54341 * 68.36819 * 13 12 2 16 16 N 1.65602 * 104.45052 * 179.97438 * 13 12 2 17 17 C 1.46498 * 120.00005 * 64.99862 * 16 13 12 18 18 H 1.09000 * 112.84635 * 346.19569 * 17 16 13 19 19 C 1.53778 * 113.61401 * 117.50264 * 17 16 13 20 20 C 1.53784 * 87.08157 * 89.11486 * 19 17 16 21 21 H 1.08991 * 113.68704 * 270.87183 * 20 19 17 22 22 S 1.81397 * 113.61288 * 139.97957 * 20 19 17 23 23 C 1.81395 * 101.92203 * 82.50331 * 22 20 19 24 24 O 1.42104 * 108.57610 * 196.99202 * 22 20 19 25 25 O 1.42097 * 108.57997 * 328.01723 * 22 20 19 26 26 C 1.53781 * 113.61390 * 215.00051 * 17 16 13 27 27 H 1.08995 * 109.47488 * 292.48046 * 1 2 3 28 28 H 1.09004 * 109.47145 * 52.48321 * 1 2 3 29 29 H 1.09004 * 109.47187 * 172.47878 * 1 2 3 30 30 H 1.08998 * 109.47057 * 183.42124 * 3 2 1 31 31 H 1.08996 * 109.47162 * 303.42696 * 3 2 1 32 32 H 1.09004 * 109.46823 * 63.42552 * 3 2 1 33 33 H 0.97010 * 120.00511 * 354.96195 * 7 6 4 34 34 H 1.09010 * 109.46630 * 179.97438 * 12 2 1 35 35 H 1.08993 * 109.47287 * 299.99438 * 12 2 1 36 36 H 0.96998 * 119.99430 * 245.00008 * 16 13 12 37 37 H 1.08998 * 113.61004 * 203.66524 * 19 17 16 38 38 H 1.08997 * 113.61429 * 334.56228 * 19 17 16 39 39 H 1.09001 * 109.46937 * 59.99907 * 23 22 20 40 40 H 1.09004 * 109.47516 * 179.97438 * 23 22 20 41 41 H 1.09002 * 109.47474 * 299.99783 * 23 22 20 42 42 H 1.09000 * 113.61490 * 25.42917 * 26 17 16 43 43 H 1.08998 * 113.61713 * 156.24913 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7232 -1.5348 1.1337 6 6 1.6098 -0.3080 2.4797 7 7 1.5397 -1.1791 3.4623 8 14 1.1368 1.4746 2.7763 9 1 0.7201 1.6474 4.1910 10 1 2.3025 2.3498 2.4926 11 1 0.0112 1.8437 1.8806 12 6 2.0399 -0.7212 -1.2493 13 16 1.4354 0.1340 -2.7304 14 8 0.0279 -0.0182 -2.8544 15 8 2.0479 1.4102 -2.8543 16 7 2.0541 -0.7399 -3.9937 17 6 1.6254 -2.1245 -4.2061 18 1 1.0942 -2.5392 -3.3494 19 6 0.9057 -2.3478 -5.5466 20 6 2.2907 -2.6273 -6.1538 21 1 2.7925 -1.7354 -6.5288 22 16 2.2988 -3.9941 -7.3463 23 6 1.7314 -3.1732 -8.8611 24 8 3.6409 -4.4200 -7.5376 25 8 1.3187 -4.9446 -6.9523 26 6 2.7396 -3.0391 -4.7418 27 1 -0.3634 0.3929 0.9495 28 1 -0.3634 0.6259 -0.8151 29 1 -0.3634 -1.0189 -0.1345 30 1 3.1282 1.4432 -0.0613 31 1 1.6273 1.9738 -0.8576 32 1 1.7275 1.9383 0.9191 33 1 1.7146 -2.1179 3.2917 34 1 3.1300 -0.7207 -1.2495 35 1 1.6767 -1.7488 -1.2493 36 1 2.7004 -0.3348 -4.5929 37 1 0.2451 -3.2148 -5.5483 38 1 0.4290 -1.4504 -5.9410 39 1 2.4245 -2.3735 -9.1224 40 1 1.6908 -3.8982 -9.6740 41 1 0.7385 -2.7544 -8.6974 42 1 3.7435 -2.6997 -4.4865 43 1 2.5812 -4.0949 -4.5223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424548652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:16 Heat of formation + Delta-G solvation = -138.682235 kcal Electronic energy + Delta-G solvation = -26567.277433 eV Core-core repulsion = 22674.424912 eV Total energy + Delta-G solvation = -3892.852522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.29271 -38.43055 -38.12883 -37.95922 -37.00945 -36.95508 -34.13498 -33.83389 -30.35155 -28.90634 -28.12920 -26.80550 -26.66426 -26.46457 -21.68117 -21.28991 -20.47951 -19.59000 -19.13268 -18.77179 -17.84538 -17.33994 -17.11139 -16.97907 -16.82953 -16.55256 -16.25988 -15.28705 -15.12826 -14.86377 -14.72651 -14.46974 -14.20778 -14.15026 -13.99993 -13.90208 -13.88034 -13.59046 -13.19585 -13.13188 -13.07841 -13.03569 -12.96406 -12.76283 -12.63046 -12.33562 -12.07946 -11.98275 -11.94120 -11.85030 -11.76649 -11.60746 -11.00596 -10.95615 -10.80751 -10.46352 -10.27517 -8.75812 -6.33204 -0.87624 -0.69569 1.42184 1.45493 1.68470 1.76343 1.88240 2.43710 2.64456 2.73907 2.92054 2.94099 3.21696 3.29830 3.47548 3.61065 3.74234 3.91447 4.00029 4.13987 4.15520 4.28339 4.28532 4.50401 4.56953 4.61186 4.62227 4.71581 4.72649 4.76342 4.89089 4.97090 4.97250 5.01865 5.14508 5.30481 5.41892 5.56424 6.00172 6.08040 6.10170 6.58527 7.35610 8.58141 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.002882 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.854654 B = 9712.740226 C =10175.428903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.049 3.951 3 C -0.187 4.187 4 C -0.601 4.601 5 H 0.036 0.964 6 C 0.000 4.000 7 N -0.920 5.920 8 Si 1.062 2.938 9 H -0.304 1.304 10 H -0.262 1.262 11 H -0.246 1.246 12 C -0.587 4.587 13 S 2.619 3.381 14 O -0.979 6.979 15 O -0.983 6.983 16 N -1.090 6.090 17 C 0.118 3.882 18 H 0.110 0.890 19 C -0.128 4.128 20 C -0.592 4.592 21 H 0.184 0.816 22 S 2.426 3.574 23 C -0.640 4.640 24 O -0.987 6.987 25 O -0.978 6.978 26 C -0.126 4.126 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.427 0.573 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.107 0.893 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -1.067 -25.796 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.046 3.954 3 C -0.243 4.243 4 C -0.639 4.639 5 H 0.054 0.946 6 C -0.202 4.202 7 N -0.554 5.554 8 Si 0.889 3.111 9 H -0.233 1.233 10 H -0.189 1.189 11 H -0.172 1.172 12 C -0.718 4.718 13 S 2.715 3.285 14 O -0.969 6.969 15 O -0.973 6.973 16 N -0.850 5.850 17 C 0.009 3.991 18 H 0.128 0.872 19 C -0.168 4.168 20 C -0.702 4.702 21 H 0.201 0.799 22 S 2.614 3.386 23 C -0.792 4.792 24 O -0.984 6.984 25 O -0.975 6.975 26 C -0.166 4.166 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.264 0.736 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.171 0.829 40 H 0.153 0.847 41 H 0.169 0.831 42 H 0.125 0.875 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.161 -0.252 -24.499 24.501 hybrid contribution 1.236 -1.107 -0.700 1.801 sum 1.075 -1.358 -25.199 25.259 Atomic orbital electron populations 1.22630 0.96946 1.01948 1.01616 1.18151 0.92544 0.92151 0.92574 1.22808 1.02802 0.97662 1.01055 1.21789 1.31318 1.18855 0.91915 0.94577 1.26757 0.93341 1.07219 0.92851 1.70960 1.43726 1.03685 1.37001 0.84097 0.78723 0.73426 0.74898 1.23258 1.18895 1.17194 1.30442 1.12720 1.13422 1.15242 1.04652 0.74350 0.74072 0.75459 1.93548 1.31026 1.86597 1.85693 1.93535 1.78404 1.39389 1.86020 1.55157 1.60668 1.23361 1.45773 1.21714 0.96722 0.80956 0.99697 0.87183 1.23319 0.92966 1.05502 0.95016 1.31690 1.06979 1.20016 1.11478 0.79894 1.07373 0.74006 0.77870 0.79333 1.30088 1.14814 1.15462 1.18863 1.93543 1.37698 1.81060 1.86085 1.93550 1.62405 1.58823 1.82756 1.23175 1.01340 1.01267 0.90823 0.92738 0.92665 0.92388 0.91295 0.92091 0.93475 0.92980 0.84516 0.84857 0.73573 0.86169 0.87412 0.82943 0.84696 0.83079 0.87479 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.49 7.38 71.98 0.53 -6.96 16 2 C 0.05 2.12 0.52 -52.93 -0.03 2.09 16 3 C -0.19 -7.80 7.33 71.98 0.53 -7.27 16 4 C -0.60 -31.91 8.42 25.60 0.22 -31.70 16 5 H 0.04 2.05 7.99 -2.91 -0.02 2.03 16 6 C 0.00 0.02 5.05 84.66 0.43 0.45 16 7 N -0.92 -55.51 13.69 21.45 0.29 -55.21 16 8 Si 1.06 49.68 23.47 68.60 1.61 51.29 16 9 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 10 H -0.26 -11.33 6.72 99.48 0.67 -10.66 16 11 H -0.25 -10.41 5.79 99.48 0.58 -9.84 16 12 C -0.59 -19.71 5.01 71.98 0.36 -19.35 16 13 S 2.62 76.56 4.43 -56.49 -0.25 76.31 16 14 O -0.98 -33.17 15.60 -127.65 -1.99 -35.16 16 15 O -0.98 -33.05 15.77 -127.65 -2.01 -35.06 16 16 N -1.09 -20.23 5.62 -167.20 -0.94 -21.17 16 17 C 0.12 1.94 4.31 45.52 0.20 2.14 16 18 H 0.11 1.87 7.74 -2.39 -0.02 1.86 16 19 C -0.13 -1.52 7.42 31.12 0.23 -1.29 16 20 C -0.59 -5.29 3.99 31.12 0.12 -5.17 16 21 H 0.18 0.41 8.11 -2.39 -0.02 0.39 16 22 S 2.43 28.48 5.34 -56.49 -0.30 28.18 16 23 C -0.64 -2.10 10.62 113.37 1.20 -0.90 16 24 O -0.99 -20.03 18.10 -127.37 -2.31 -22.34 16 25 O -0.98 -19.25 17.19 -127.37 -2.19 -21.44 16 26 C -0.13 -1.65 7.45 31.12 0.23 -1.41 16 27 H 0.05 2.45 4.47 -2.39 -0.01 2.44 16 28 H 0.05 2.16 6.02 -2.38 -0.01 2.15 16 29 H 0.06 2.41 8.13 -2.38 -0.02 2.39 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.06 2.33 5.72 -2.39 -0.01 2.32 16 32 H 0.05 2.01 2.28 -2.38 -0.01 2.01 16 33 H 0.26 15.73 8.73 -92.70 -0.81 14.92 16 34 H 0.14 4.15 8.14 -2.38 -0.02 4.13 16 35 H 0.13 4.10 7.83 -2.39 -0.02 4.08 16 36 H 0.43 5.58 8.75 -96.75 -0.85 4.74 16 37 H 0.12 1.37 7.36 -2.39 -0.02 1.35 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.11 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -83.09 354.55 -4.08 -87.17 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.02 Total: 16.81 kcal Atomic # 6 Polarization: -73.39 SS G_CDS: 4.02 Total: -69.37 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -0.65 Total: -76.38 kcal Atomic # 8 Polarization: -105.51 SS G_CDS: -8.50 Total: -114.01 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 1.61 Total: 51.29 kcal Atomic # 16 Polarization: 105.04 SS G_CDS: -0.55 Total: 104.49 kcal Total: -83.09 -4.08 -87.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424548652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.513 kcal (2) G-P(sol) polarization free energy of solvation -83.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds