Wall clock time and date at job start Tue Mar 31 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 C 1.50696 * 109.46994 * 240.00282 * 2 1 3 5 5 H 1.08006 * 119.99648 * 240.83676 * 4 2 1 6 6 C 1.37871 * 120.00431 * 60.83240 * 4 2 1 7 7 N 1.31514 * 120.00375 * 194.57918 * 6 4 2 8 8 Si 1.86796 * 120.00029 * 14.58064 * 6 4 2 9 9 H 1.48505 * 109.47464 * 84.44768 * 8 6 4 10 10 H 1.48497 * 109.47509 * 204.45259 * 8 6 4 11 11 H 1.48505 * 109.47076 * 324.45084 * 8 6 4 12 12 C 1.53001 * 109.47233 * 119.99829 * 2 1 3 13 13 S 1.81397 * 109.47355 * 300.00282 * 12 2 1 14 14 O 1.42100 * 110.54329 * 68.37149 * 13 12 2 15 15 O 1.42106 * 110.54335 * 291.62707 * 13 12 2 16 16 N 1.65598 * 104.44979 * 179.97438 * 13 12 2 17 17 C 1.46496 * 119.99797 * 65.00124 * 16 13 12 18 18 C 1.53003 * 109.46946 * 164.99863 * 17 16 13 19 19 C 1.52998 * 109.47294 * 179.97438 * 18 17 16 20 20 C 1.53043 * 113.15511 * 275.37611 * 19 18 17 21 21 S 1.81428 * 89.89001 * 211.84995 * 20 19 18 22 22 O 1.42095 * 112.75337 * 280.47088 * 21 20 19 23 23 O 1.42100 * 112.74901 * 136.72871 * 21 20 19 24 24 C 1.53036 * 113.15542 * 175.00020 * 19 18 17 25 25 H 1.08994 * 109.46935 * 310.23189 * 1 2 3 26 26 H 1.08997 * 109.47237 * 70.23593 * 1 2 3 27 27 H 1.09001 * 109.47003 * 190.23127 * 1 2 3 28 28 H 1.08993 * 109.47071 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47159 * 299.99912 * 3 2 1 30 30 H 1.08997 * 109.46943 * 60.00133 * 3 2 1 31 31 H 0.97002 * 120.00478 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.46863 * 179.97438 * 12 2 1 33 33 H 1.09007 * 109.46606 * 60.00333 * 12 2 1 34 34 H 0.96998 * 119.99727 * 244.99310 * 16 13 12 35 35 H 1.09002 * 109.47378 * 44.99823 * 17 16 13 36 36 H 1.08997 * 109.46936 * 284.99271 * 17 16 13 37 37 H 1.09002 * 109.47115 * 59.99799 * 18 17 16 38 38 H 1.09000 * 109.47448 * 299.99873 * 18 17 16 39 39 H 1.09005 * 112.49309 * 45.21704 * 19 18 17 40 40 H 1.09003 * 113.14589 * 327.11207 * 20 19 18 41 41 H 1.09002 * 113.14629 * 96.58908 * 20 19 18 42 42 H 1.09000 * 113.14820 * 263.41048 * 24 19 18 43 43 H 1.09005 * 113.14747 * 32.88656 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6421 -1.5963 -1.1314 6 6 1.7135 -0.2294 -2.4826 7 7 1.8969 -0.9847 -3.5435 8 14 1.0212 1.4951 -2.6723 9 1 2.1370 2.4737 -2.7240 10 1 0.2328 1.5767 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0401 -0.7212 1.2493 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4101 2.8544 16 7 2.0531 -0.7408 3.9936 17 6 3.5015 -0.7981 4.2059 18 6 3.7903 -1.3345 5.6094 19 6 5.3030 -1.3950 5.8310 20 6 5.9393 -2.6785 5.2926 21 16 7.1800 -2.6139 6.6147 22 8 8.2279 -1.6942 6.3405 23 8 7.4160 -3.8827 7.2093 24 6 5.6867 -1.8061 7.2543 25 1 -0.3633 0.6637 0.7845 26 1 -0.3633 0.3475 -0.9671 27 1 -0.3633 -1.0113 0.1825 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6729 -0.6462 -4.4246 32 1 3.1300 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 1.4559 -1.2151 4.5929 35 1 3.9233 0.2019 4.1052 36 1 3.9514 -1.4586 3.4648 37 1 3.3685 -2.3346 5.7101 38 1 3.3403 -0.6741 6.3506 39 1 5.8102 -0.4906 5.4946 40 1 5.2819 -3.5451 5.3638 41 1 6.3672 -2.5597 4.2972 42 1 5.9032 -0.9565 7.9020 43 1 4.9807 -2.5044 7.7037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463527112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:06 Heat of formation + Delta-G solvation = -108.671412 kcal Electronic energy + Delta-G solvation = -26009.116944 eV Core-core repulsion = 22117.565789 eV Total energy + Delta-G solvation = -3891.551155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -38.47282 -37.64824 -36.77799 -36.75322 -36.45419 -35.58008 -35.18570 -31.98673 -29.70323 -27.47076 -27.15861 -26.41825 -25.06075 -23.71674 -21.26941 -19.93244 -19.24849 -18.87103 -17.57443 -17.01149 -16.72304 -16.65625 -16.30482 -16.16508 -15.78174 -15.53374 -15.15851 -14.82970 -14.38159 -13.67815 -13.59820 -13.45037 -13.19012 -12.94928 -12.85995 -12.65948 -12.63621 -12.51510 -12.47168 -12.15905 -11.77243 -11.70810 -11.61885 -11.58736 -11.30739 -11.13843 -11.05277 -10.81732 -10.78754 -10.75205 -10.21270 -10.09579 -10.07206 -9.50882 -9.04956 -8.78237 -8.50949 -6.23014 -4.20723 -0.28502 0.63728 1.56167 2.97048 3.22608 3.24775 3.31768 3.36366 3.54718 3.63101 4.08109 4.18336 4.30863 4.35304 4.53809 4.65135 4.69769 4.80383 4.86972 5.02755 5.06511 5.18872 5.25509 5.27949 5.37289 5.48425 5.61405 5.69124 5.87770 5.94777 6.16045 6.27888 6.39708 6.45032 6.66003 6.82895 6.94625 7.09397 7.27305 7.58678 8.34634 8.79250 9.40921 10.89468 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002662 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.030915 B =10516.845234 C =11331.283386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.054 3.946 3 C -0.182 4.182 4 C -0.510 4.510 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.280 1.280 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.574 4.574 13 S 2.591 3.409 14 O -0.963 6.963 15 O -0.964 6.964 16 N -1.129 6.129 17 C 0.109 3.891 18 C -0.102 4.102 19 C -0.070 4.070 20 C -0.601 4.601 21 S 2.407 3.593 22 O -0.914 6.914 23 O -0.929 6.929 24 C -0.598 4.598 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -3.031 21.528 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 C -0.239 4.239 4 C -0.548 4.548 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.706 3.294 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.708 4.708 13 S 2.688 3.312 14 O -0.954 6.954 15 O -0.954 6.954 16 N -0.887 5.887 17 C -0.017 4.017 18 C -0.142 4.142 19 C -0.091 4.091 20 C -0.730 4.730 21 S 2.589 3.411 22 O -0.911 6.911 23 O -0.926 6.926 24 C -0.727 4.727 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.347 -2.503 21.622 22.973 hybrid contribution -1.254 0.445 -0.656 1.484 sum 6.093 -2.058 20.967 21.931 Atomic orbital electron populations 1.22684 0.97020 1.01342 1.01790 1.18230 0.92517 0.91720 0.92371 1.22822 1.02362 0.97855 1.00821 1.20646 1.34008 1.12607 0.87541 0.90412 1.24963 0.94528 0.97307 0.95789 1.69932 1.47828 1.35782 0.98923 0.87438 0.79816 0.85648 0.76534 1.20779 1.22906 1.17191 1.30371 1.11766 1.13076 1.15543 1.05650 0.74446 0.75286 0.75818 1.93572 1.29389 1.86644 1.85777 1.93545 1.78163 1.38155 1.85526 1.55763 1.14121 1.71232 1.47552 1.21348 0.80423 1.02372 0.97580 1.21595 0.92886 1.02852 0.96917 1.21468 0.99151 0.97077 0.91386 1.31106 1.17503 1.05490 1.18870 1.08494 0.76799 0.75600 0.80221 1.93733 1.51361 1.63586 1.82446 1.93646 1.86463 1.39111 1.73409 1.31030 1.21908 1.14172 1.05567 0.94436 0.91421 0.92331 0.91773 0.92995 0.93174 0.92378 0.85766 0.85428 0.75417 0.89884 0.91282 0.90272 0.89982 0.86250 0.83595 0.85137 0.85597 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 6.95 37.16 0.26 -3.51 16 2 C 0.05 1.21 0.52 -155.66 -0.08 1.13 16 3 C -0.18 -3.97 7.22 37.16 0.27 -3.71 16 4 C -0.51 -13.42 8.62 -34.44 -0.30 -13.71 16 5 H 0.08 2.17 7.99 -52.48 -0.42 1.75 16 6 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16 7 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 8 Si 0.87 21.24 22.79 -169.99 -3.87 17.37 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.25 -5.59 4.67 56.52 0.26 -5.33 16 12 C -0.57 -9.93 4.99 37.16 0.19 -9.74 16 13 S 2.59 41.62 4.50 -107.50 -0.48 41.13 16 14 O -0.96 -17.95 15.93 -57.54 -0.92 -18.86 16 15 O -0.96 -17.75 15.12 -57.54 -0.87 -18.62 16 16 N -1.13 -12.33 5.89 -10.61 -0.06 -12.39 16 17 C 0.11 0.96 6.13 -4.04 -0.02 0.93 16 18 C -0.10 -0.60 5.13 -26.73 -0.14 -0.73 16 19 C -0.07 -0.33 3.32 -90.58 -0.30 -0.63 16 20 C -0.60 -2.35 7.49 37.18 0.28 -2.07 16 21 S 2.41 11.88 7.55 -107.50 -0.81 11.07 16 22 O -0.91 -7.96 18.18 -57.30 -1.04 -9.00 16 23 O -0.93 -8.02 18.18 -57.30 -1.04 -9.06 16 24 C -0.60 -1.92 7.49 37.18 0.28 -1.64 16 25 H 0.04 0.77 6.21 -51.93 -0.32 0.45 16 26 H 0.07 1.54 4.32 -51.93 -0.22 1.32 16 27 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.05 1.18 2.28 -51.93 -0.12 1.06 16 30 H 0.05 1.02 5.46 -51.93 -0.28 0.74 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 34 H 0.41 3.63 8.62 -34.46 -0.30 3.33 16 35 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.36 7.89 -51.93 -0.41 -0.05 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.12 0.50 8.13 -51.93 -0.42 0.08 16 40 H 0.15 0.40 7.94 -51.93 -0.41 -0.01 16 41 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.14 0.29 8.12 -51.93 -0.42 -0.13 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -38.90 352.18 -9.07 -47.96 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.38 Total: 2.07 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 0.33 Total: -31.64 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.71 Total: -37.73 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -3.87 Total: -55.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -3.87 Total: 17.37 kcal Atomic # 16 Polarization: 53.49 SS G_CDS: -1.30 Total: 52.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.90 -9.07 -47.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463527112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.707 kcal (2) G-P(sol) polarization free energy of solvation -38.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds