Wall clock time and date at job start Tue Mar 31 2020 22:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 C 1.50696 * 109.46994 * 240.00282 * 2 1 3 5 5 H 1.08006 * 119.99648 * 240.83676 * 4 2 1 6 6 C 1.37871 * 120.00431 * 60.83240 * 4 2 1 7 7 N 1.31514 * 120.00375 * 194.57918 * 6 4 2 8 8 Si 1.86796 * 120.00029 * 14.58064 * 6 4 2 9 9 H 1.48505 * 109.47464 * 84.44768 * 8 6 4 10 10 H 1.48497 * 109.47509 * 204.45259 * 8 6 4 11 11 H 1.48505 * 109.47076 * 324.45084 * 8 6 4 12 12 C 1.53001 * 109.47233 * 119.99829 * 2 1 3 13 13 S 1.81397 * 109.47355 * 300.00282 * 12 2 1 14 14 O 1.42100 * 110.54329 * 68.37149 * 13 12 2 15 15 O 1.42106 * 110.54335 * 291.62707 * 13 12 2 16 16 N 1.65598 * 104.44979 * 179.97438 * 13 12 2 17 17 C 1.46496 * 119.99797 * 65.00124 * 16 13 12 18 18 C 1.53003 * 109.46946 * 164.99863 * 17 16 13 19 19 C 1.52998 * 109.47294 * 179.97438 * 18 17 16 20 20 C 1.53043 * 113.15511 * 275.37611 * 19 18 17 21 21 S 1.81428 * 89.89001 * 211.84995 * 20 19 18 22 22 O 1.42095 * 112.75337 * 280.47088 * 21 20 19 23 23 O 1.42100 * 112.74901 * 136.72871 * 21 20 19 24 24 C 1.53036 * 113.15542 * 175.00020 * 19 18 17 25 25 H 1.08994 * 109.46935 * 310.23189 * 1 2 3 26 26 H 1.08997 * 109.47237 * 70.23593 * 1 2 3 27 27 H 1.09001 * 109.47003 * 190.23127 * 1 2 3 28 28 H 1.08993 * 109.47071 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47159 * 299.99912 * 3 2 1 30 30 H 1.08997 * 109.46943 * 60.00133 * 3 2 1 31 31 H 0.97002 * 120.00478 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.46863 * 179.97438 * 12 2 1 33 33 H 1.09007 * 109.46606 * 60.00333 * 12 2 1 34 34 H 0.96998 * 119.99727 * 244.99310 * 16 13 12 35 35 H 1.09002 * 109.47378 * 44.99823 * 17 16 13 36 36 H 1.08997 * 109.46936 * 284.99271 * 17 16 13 37 37 H 1.09002 * 109.47115 * 59.99799 * 18 17 16 38 38 H 1.09000 * 109.47448 * 299.99873 * 18 17 16 39 39 H 1.09005 * 112.49309 * 45.21704 * 19 18 17 40 40 H 1.09003 * 113.14589 * 327.11207 * 20 19 18 41 41 H 1.09002 * 113.14629 * 96.58908 * 20 19 18 42 42 H 1.09000 * 113.14820 * 263.41048 * 24 19 18 43 43 H 1.09005 * 113.14747 * 32.88656 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6421 -1.5963 -1.1314 6 6 1.7135 -0.2294 -2.4826 7 7 1.8969 -0.9847 -3.5435 8 14 1.0212 1.4951 -2.6723 9 1 2.1370 2.4737 -2.7240 10 1 0.2328 1.5767 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0401 -0.7212 1.2493 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4101 2.8544 16 7 2.0531 -0.7408 3.9936 17 6 3.5015 -0.7981 4.2059 18 6 3.7903 -1.3345 5.6094 19 6 5.3030 -1.3950 5.8310 20 6 5.9393 -2.6785 5.2926 21 16 7.1800 -2.6139 6.6147 22 8 8.2279 -1.6942 6.3405 23 8 7.4160 -3.8827 7.2093 24 6 5.6867 -1.8061 7.2543 25 1 -0.3633 0.6637 0.7845 26 1 -0.3633 0.3475 -0.9671 27 1 -0.3633 -1.0113 0.1825 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6729 -0.6462 -4.4246 32 1 3.1300 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 1.4559 -1.2151 4.5929 35 1 3.9233 0.2019 4.1052 36 1 3.9514 -1.4586 3.4648 37 1 3.3685 -2.3346 5.7101 38 1 3.3403 -0.6741 6.3506 39 1 5.8102 -0.4906 5.4946 40 1 5.2819 -3.5451 5.3638 41 1 6.3672 -2.5597 4.2972 42 1 5.9032 -0.9565 7.9020 43 1 4.9807 -2.5044 7.7037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463527112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:05 Heat of formation + Delta-G solvation = -142.244776 kcal Electronic energy + Delta-G solvation = -26010.572794 eV Core-core repulsion = 22117.565789 eV Total energy + Delta-G solvation = -3893.007005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.91003 -38.48729 -38.19583 -38.07308 -36.99199 -36.92121 -35.95212 -34.04048 -30.31888 -28.95075 -28.14073 -27.45223 -27.08544 -24.33255 -21.84768 -21.42716 -20.13880 -19.65431 -18.81208 -18.11917 -17.63087 -17.40650 -17.15968 -16.99110 -16.94923 -16.85553 -16.14327 -15.88580 -15.07388 -15.03359 -14.93275 -14.76948 -14.30020 -14.15357 -14.00442 -13.92371 -13.39115 -13.24193 -13.21540 -13.18537 -13.07242 -12.99317 -12.74002 -12.65359 -12.60757 -12.52529 -12.01794 -11.99534 -11.84601 -11.82315 -11.69948 -11.30022 -11.10235 -10.96310 -10.68349 -10.52735 -10.24577 -8.35052 -6.34332 -0.69129 -0.61547 1.22324 1.30115 1.35403 1.42984 1.88710 2.29535 2.81211 2.88624 2.99725 3.17406 3.26119 3.34939 3.74107 3.81223 3.98937 4.09174 4.16557 4.25902 4.35157 4.41696 4.46114 4.51703 4.61407 4.67959 4.70026 4.73404 4.77848 4.85158 4.96244 4.98586 5.11713 5.16375 5.25589 5.38132 5.40009 5.53698 5.63696 6.19030 6.26450 6.69064 7.30352 8.80716 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002662 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.030915 B =10516.845234 C =11331.283386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 C -0.187 4.187 4 C -0.503 4.503 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.916 3.084 9 H -0.276 1.276 10 H -0.308 1.308 11 H -0.221 1.221 12 C -0.585 4.585 13 S 2.616 3.384 14 O -0.989 6.989 15 O -0.986 6.986 16 N -1.111 6.111 17 C 0.092 3.908 18 C -0.099 4.099 19 C -0.079 4.079 20 C -0.592 4.592 21 S 2.415 3.585 22 O -0.958 6.958 23 O -0.971 6.971 24 C -0.575 4.575 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.266 0.734 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.426 0.574 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 -2.593 23.856 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.042 3.958 3 C -0.244 4.244 4 C -0.542 4.542 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.746 3.254 9 H -0.203 1.203 10 H -0.236 1.236 11 H -0.146 1.146 12 C -0.717 4.717 13 S 2.712 3.288 14 O -0.980 6.980 15 O -0.976 6.976 16 N -0.873 5.873 17 C -0.034 4.034 18 C -0.139 4.139 19 C -0.100 4.100 20 C -0.722 4.722 21 S 2.603 3.397 22 O -0.956 6.956 23 O -0.968 6.968 24 C -0.706 4.706 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.262 0.738 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.182 0.818 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.671 -2.076 23.970 24.968 hybrid contribution -1.024 0.233 -1.304 1.674 sum 5.647 -1.843 22.667 23.432 Atomic orbital electron populations 1.22702 0.96940 1.02159 1.01555 1.18209 0.92676 0.92144 0.92807 1.22850 1.03032 0.97493 1.01024 1.20957 1.32365 1.11614 0.89256 0.93063 1.25665 0.95423 1.00420 0.95769 1.70052 1.50399 1.37594 0.99466 0.86729 0.79829 0.81919 0.76936 1.20269 1.23646 1.14574 1.30399 1.13131 1.13535 1.14606 1.04620 0.73517 0.74912 0.75797 1.93534 1.31245 1.87010 1.86169 1.93517 1.78471 1.39746 1.85852 1.55287 1.15527 1.70768 1.45766 1.21718 0.78668 1.02882 1.00106 1.21606 0.93415 1.03927 0.95000 1.21576 0.98653 0.97515 0.92303 1.31117 1.16523 1.05958 1.18604 1.07980 0.76990 0.74305 0.80452 1.93670 1.54125 1.64361 1.83405 1.93585 1.87390 1.41164 1.74708 1.30913 1.19758 1.14603 1.05330 0.93053 0.92654 0.91668 0.90987 0.93988 0.91651 0.92522 0.83969 0.84157 0.73775 0.90415 0.89852 0.88393 0.89328 0.85975 0.81845 0.84541 0.84157 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.47 6.95 71.98 0.50 -6.97 16 2 C 0.04 1.89 0.52 -52.93 -0.03 1.86 16 3 C -0.19 -7.80 7.22 71.98 0.52 -7.28 16 4 C -0.50 -26.48 8.62 25.60 0.22 -26.26 16 5 H 0.05 2.90 7.99 -2.91 -0.02 2.87 16 6 C 0.03 1.44 5.31 84.65 0.45 1.89 16 7 N -0.94 -56.27 13.96 21.45 0.30 -55.97 16 8 Si 0.92 43.41 22.79 68.60 1.56 44.98 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.31 -14.77 7.11 99.48 0.71 -14.07 16 11 H -0.22 -9.54 4.67 99.48 0.46 -9.08 16 12 C -0.59 -18.91 4.99 71.98 0.36 -18.55 16 13 S 2.62 76.72 4.50 -56.49 -0.25 76.46 16 14 O -0.99 -34.28 15.93 -127.65 -2.03 -36.31 16 15 O -0.99 -33.65 15.12 -127.65 -1.93 -35.58 16 16 N -1.11 -20.34 5.89 -187.49 -1.10 -21.44 16 17 C 0.09 1.28 6.13 86.38 0.53 1.81 16 18 C -0.10 -0.74 5.13 30.59 0.16 -0.58 16 19 C -0.08 -0.47 3.32 -10.77 -0.04 -0.51 16 20 C -0.59 -2.98 7.49 72.00 0.54 -2.44 16 21 S 2.42 21.26 7.55 -56.49 -0.43 20.83 16 22 O -0.96 -16.62 18.18 -127.88 -2.32 -18.95 16 23 O -0.97 -16.38 18.18 -127.88 -2.32 -18.70 16 24 C -0.58 -1.82 7.49 71.99 0.54 -1.28 16 25 H 0.05 2.01 6.21 -2.39 -0.01 2.00 16 26 H 0.05 2.44 4.32 -2.39 -0.01 2.43 16 27 H 0.06 2.61 8.11 -2.39 -0.02 2.59 16 28 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.04 1.82 2.28 -2.38 -0.01 1.81 16 30 H 0.06 2.51 5.46 -2.39 -0.01 2.50 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 33 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 34 H 0.43 5.82 8.62 -96.75 -0.83 4.99 16 35 H 0.08 1.20 7.70 -2.39 -0.02 1.18 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.40 7.89 -2.39 -0.02 0.38 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.12 0.69 8.13 -2.38 -0.02 0.67 16 40 H 0.16 0.30 7.94 -2.39 -0.02 0.28 16 41 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.16 -0.04 8.12 -2.38 -0.02 -0.06 16 Total: -1.00 -84.28 352.18 -4.83 -89.10 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.04 Total: 13.88 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 3.75 Total: -58.31 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -0.80 Total: -77.41 kcal Atomic # 8 Polarization: -100.93 SS G_CDS: -8.61 Total: -109.54 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.56 Total: 44.98 kcal Atomic # 16 Polarization: 97.98 SS G_CDS: -0.68 Total: 97.30 kcal Total: -84.28 -4.83 -89.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463527112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.140 kcal (2) G-P(sol) polarization free energy of solvation -84.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds