Wall clock time and date at job start Tue Mar 31 2020 22:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21378 * 119.99879 * 2 1 4 4 C 1.46328 * 119.99763 * 180.02562 * 2 1 3 5 5 N 1.33859 * 122.70241 * 359.97438 * 4 2 1 6 6 C 1.29367 * 115.77969 * 180.02562 * 5 4 2 7 7 N 1.38832 * 125.12450 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00269 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99900 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00097 * 179.72741 * 8 7 6 11 11 C 1.47422 * 125.64727 * 359.95968 * 10 8 7 12 12 C 1.55132 * 104.72087 * 155.82223 * 11 10 8 13 13 C 1.55159 * 101.48684 * 37.29365 * 12 11 10 14 14 O 1.42898 * 110.71574 * 82.69504 * 13 12 11 15 15 C 1.50693 * 110.87327 * 205.89810 * 13 12 11 16 16 H 1.08001 * 120.00264 * 355.07023 * 15 13 12 17 17 C 1.37879 * 119.99896 * 175.06760 * 15 13 12 18 18 N 1.31510 * 120.00084 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 119.99875 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47263 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47013 * 120.00006 * 19 17 15 22 22 H 1.48501 * 109.47389 * 239.99686 * 19 17 15 23 23 C 1.47016 * 125.64839 * 180.27714 * 10 8 7 24 24 S 1.75924 * 109.75493 * 0.23264 * 6 5 4 25 25 C 1.36354 * 122.69505 * 179.97438 * 4 2 1 26 26 C 1.50700 * 125.46613 * 359.97438 * 25 4 2 27 27 H 1.09000 * 109.47382 * 240.00064 * 1 2 3 28 28 H 1.09004 * 109.47052 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47366 * 120.00273 * 1 2 3 30 30 H 0.97000 * 119.99619 * 0.02562 * 7 6 5 31 31 H 1.09001 * 110.36735 * 274.75174 * 11 10 8 32 32 H 1.09000 * 110.36516 * 37.07534 * 11 10 8 33 33 H 1.09005 * 111.19240 * 279.19288 * 12 11 10 34 34 H 1.09000 * 110.90764 * 155.27586 * 12 11 10 35 35 H 0.96699 * 114.00148 * 185.02021 * 14 13 12 36 36 H 0.97000 * 120.00162 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.87996 * 300.43538 * 23 10 8 38 38 H 1.08999 * 109.88848 * 61.44598 * 23 10 8 39 39 H 1.08996 * 109.46977 * 89.99241 * 26 25 4 40 40 H 1.08996 * 109.47033 * 209.99949 * 26 25 4 41 41 H 1.09008 * 109.46882 * 329.99724 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1139 1.0512 0.0000 4 6 2.2386 -1.2673 -0.0006 5 7 1.6246 -2.4568 -0.0006 6 6 2.4018 -3.4910 -0.0006 7 7 1.9738 -4.8117 -0.0001 8 6 2.8763 -5.8126 0.0003 9 8 4.0654 -5.5589 -0.0001 10 7 2.4608 -7.0947 0.0063 11 6 1.0563 -7.5427 0.0136 12 6 1.0942 -8.9686 -0.5962 13 6 2.4191 -9.5213 -0.0077 14 8 2.2149 -10.0210 1.3154 15 6 2.9960 -10.5924 -0.8969 16 1 2.4460 -10.9294 -1.7631 17 6 4.2263 -11.1423 -0.6047 18 7 4.8964 -10.7316 0.4497 19 14 4.9417 -12.4695 -1.7074 20 1 3.9988 -12.7504 -2.8196 21 1 6.2381 -12.0053 -2.2635 22 1 5.1575 -13.7074 -0.9160 23 6 3.3331 -8.2781 0.0133 24 16 4.0826 -2.9718 0.0061 25 6 3.6006 -1.3314 -0.0011 26 6 4.5318 -0.1466 -0.0018 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 1.0251 -5.0141 -0.0001 31 1 0.6734 -7.5739 1.0337 32 1 0.4447 -6.8833 -0.6021 33 1 1.1361 -8.9306 -1.6848 34 1 0.2413 -9.5582 -0.2601 35 1 3.0259 -10.3075 1.7572 36 1 5.7617 -11.1186 0.6554 37 1 3.9721 -8.2728 -0.8698 38 1 3.9465 -8.2813 0.9144 39 1 4.7566 0.1394 1.0257 40 1 5.4558 -0.4109 -0.5159 41 1 4.0563 0.6889 -0.5157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466606739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:44 Heat of formation + Delta-G solvation = -64.107679 kcal Electronic energy + Delta-G solvation = -26840.468487 eV Core-core repulsion = 22847.698560 eV Total energy + Delta-G solvation = -3992.769927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64032 -40.11197 -38.46252 -37.69698 -34.88041 -34.52475 -32.34759 -32.22493 -30.71902 -30.18893 -28.06748 -27.02038 -25.34368 -24.15930 -23.28995 -21.92565 -20.67343 -19.83382 -19.12937 -18.01720 -17.44005 -17.10023 -16.94720 -16.11648 -15.81241 -15.49725 -15.24980 -14.93093 -14.63997 -14.48556 -14.22336 -13.63392 -13.24868 -13.18400 -13.03567 -12.99308 -12.72021 -12.51828 -12.46323 -12.24589 -11.88619 -11.80999 -11.64382 -11.16413 -10.98610 -10.86370 -10.78960 -10.55576 -10.32123 -10.23515 -9.94772 -9.63321 -9.48170 -9.28737 -8.80052 -8.48974 -8.45981 -7.97275 -6.39956 -4.48771 0.45159 0.98419 1.48806 1.76141 2.31188 2.88214 3.13876 3.23449 3.26218 3.30303 3.80200 4.03832 4.18954 4.54817 4.80573 4.87557 4.98794 5.12065 5.19261 5.32073 5.43399 5.44292 5.52459 5.56104 5.68809 5.77461 5.82352 5.83427 5.98975 6.16535 6.30475 6.42255 6.63153 6.66756 6.78104 7.08269 7.16507 7.26361 7.58703 7.62101 7.87688 7.95508 8.41487 8.55696 9.16112 9.26143 10.67924 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.002574 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.078384 B =10877.084120 C =11623.666896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.434 3.566 3 O -0.459 6.459 4 C -0.023 4.023 5 N -0.481 5.481 6 C 0.282 3.718 7 N -0.636 5.636 8 C 0.712 3.288 9 O -0.564 6.564 10 N -0.612 5.612 11 C 0.095 3.905 12 C -0.115 4.115 13 C 0.249 3.751 14 O -0.584 6.584 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.118 3.882 24 S 0.290 5.710 25 C -0.238 4.238 26 C -0.081 4.081 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.419 0.581 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.384 0.616 36 H 0.271 0.729 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 14.981 -0.436 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.311 3.689 3 O -0.335 6.335 4 C -0.155 4.155 5 N -0.205 5.205 6 C -0.089 4.089 7 N -0.289 5.289 8 C 0.413 3.587 9 O -0.442 6.442 10 N -0.347 5.347 11 C -0.028 4.028 12 C -0.153 4.153 13 C 0.208 3.792 14 O -0.393 6.393 15 C -0.576 4.576 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.532 5.532 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.003 4.003 24 S 0.544 5.456 25 C -0.364 4.364 26 C -0.140 4.140 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.138 15.116 -0.467 15.972 hybrid contribution -0.110 -0.408 -0.375 0.565 sum -5.248 14.707 -0.842 15.638 Atomic orbital electron populations 1.22071 0.92883 1.04056 1.05102 1.21506 0.91633 0.85454 0.70268 1.90516 1.72103 1.33189 1.37685 1.20435 0.90345 0.93004 1.11724 1.66964 1.35620 0.96329 1.21575 1.23800 0.94372 0.88146 1.02583 1.41891 1.11200 1.00507 1.75344 1.15388 0.84175 0.80043 0.79108 1.90833 1.14123 1.80947 1.58249 1.47998 1.09746 1.03291 1.73617 1.22495 0.82014 0.97406 1.00908 1.22779 0.99854 0.92607 1.00041 1.19514 0.88667 0.88948 0.82052 1.86117 1.38345 1.84784 1.30025 1.21499 1.03629 1.21003 1.11491 0.91332 1.25079 0.96407 0.96546 0.95236 1.69684 1.14699 1.42521 1.26260 0.86330 0.78973 0.81099 0.80427 1.19561 1.20722 1.20684 1.23145 0.93217 0.81307 1.02597 1.85316 1.03536 0.90913 1.65881 1.26603 0.98628 1.04747 1.06418 1.20430 0.96491 0.93747 1.03319 0.88744 0.90211 0.88772 0.74222 0.91059 0.92040 0.90155 0.90141 0.76599 0.91907 0.91003 0.91144 0.90320 0.91314 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.93 36.01 0.36 -1.25 16 2 C 0.43 5.24 7.21 -31.06 -0.22 5.01 16 3 O -0.46 -6.24 14.77 5.47 0.08 -6.16 16 4 C -0.02 -0.31 6.65 -84.41 -0.56 -0.87 16 5 N -0.48 -6.66 10.33 -10.44 -0.11 -6.77 16 6 C 0.28 4.15 8.34 -87.72 -0.73 3.41 16 7 N -0.64 -9.13 5.36 -16.36 -0.09 -9.22 16 8 C 0.71 12.64 8.45 -86.92 -0.73 11.91 16 9 O -0.56 -11.47 14.15 5.29 0.07 -11.40 16 10 N -0.61 -11.10 3.32 -176.10 -0.59 -11.68 16 11 C 0.09 1.42 6.58 -2.41 -0.02 1.41 16 12 C -0.11 -2.02 6.24 -24.46 -0.15 -2.18 16 13 C 0.25 5.48 0.85 -89.94 -0.08 5.40 16 14 O -0.58 -13.50 13.07 -35.23 -0.46 -13.96 16 15 C -0.54 -13.11 8.13 -34.44 -0.28 -13.39 16 16 H 0.07 1.65 7.78 -52.49 -0.41 1.25 16 17 C 0.07 1.75 5.28 -17.82 -0.09 1.65 16 18 N -0.89 -22.42 10.96 55.43 0.61 -21.82 16 19 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 C 0.12 2.59 5.23 -3.07 -0.02 2.57 16 24 S 0.29 4.14 20.22 -107.50 -2.17 1.97 16 25 C -0.24 -3.11 6.42 -34.99 -0.22 -3.34 16 26 C -0.08 -0.87 9.62 36.01 0.35 -0.52 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.42 4.91 7.30 -40.82 -0.30 4.61 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 33 H 0.08 1.36 8.05 -51.93 -0.42 0.95 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.38 9.15 7.45 45.56 0.34 9.49 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.07 1.73 7.82 -51.93 -0.41 1.32 16 38 H 0.07 1.69 7.92 -51.93 -0.41 1.28 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.09 5.96 -51.92 -0.31 0.79 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -27.87 356.84 -9.09 -36.95 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.38 Total: 12.38 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -2.41 Total: 9.83 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.17 Total: -49.49 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.30 Total: -31.51 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -2.17 Total: 1.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.87 -9.09 -36.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466606739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.157 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds