Wall clock time and date at job start Tue Mar 31 2020 22:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21378 * 119.99879 * 2 1 4 4 C 1.46328 * 119.99763 * 180.02562 * 2 1 3 5 5 N 1.33859 * 122.70241 * 359.97438 * 4 2 1 6 6 C 1.29367 * 115.77969 * 180.02562 * 5 4 2 7 7 N 1.38832 * 125.12450 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00269 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99900 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00097 * 179.72741 * 8 7 6 11 11 C 1.47422 * 125.64727 * 359.95968 * 10 8 7 12 12 C 1.55132 * 104.72087 * 155.82223 * 11 10 8 13 13 C 1.55159 * 101.48684 * 37.29365 * 12 11 10 14 14 O 1.42898 * 110.71574 * 82.69504 * 13 12 11 15 15 C 1.50693 * 110.87327 * 205.89810 * 13 12 11 16 16 H 1.08001 * 120.00264 * 355.07023 * 15 13 12 17 17 C 1.37879 * 119.99896 * 175.06760 * 15 13 12 18 18 N 1.31510 * 120.00084 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 119.99875 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47263 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47013 * 120.00006 * 19 17 15 22 22 H 1.48501 * 109.47389 * 239.99686 * 19 17 15 23 23 C 1.47016 * 125.64839 * 180.27714 * 10 8 7 24 24 S 1.75924 * 109.75493 * 0.23264 * 6 5 4 25 25 C 1.36354 * 122.69505 * 179.97438 * 4 2 1 26 26 C 1.50700 * 125.46613 * 359.97438 * 25 4 2 27 27 H 1.09000 * 109.47382 * 240.00064 * 1 2 3 28 28 H 1.09004 * 109.47052 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47366 * 120.00273 * 1 2 3 30 30 H 0.97000 * 119.99619 * 0.02562 * 7 6 5 31 31 H 1.09001 * 110.36735 * 274.75174 * 11 10 8 32 32 H 1.09000 * 110.36516 * 37.07534 * 11 10 8 33 33 H 1.09005 * 111.19240 * 279.19288 * 12 11 10 34 34 H 1.09000 * 110.90764 * 155.27586 * 12 11 10 35 35 H 0.96699 * 114.00148 * 185.02021 * 14 13 12 36 36 H 0.97000 * 120.00162 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.87996 * 300.43538 * 23 10 8 38 38 H 1.08999 * 109.88848 * 61.44598 * 23 10 8 39 39 H 1.08996 * 109.46977 * 89.99241 * 26 25 4 40 40 H 1.08996 * 109.47033 * 209.99949 * 26 25 4 41 41 H 1.09008 * 109.46882 * 329.99724 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1139 1.0512 0.0000 4 6 2.2386 -1.2673 -0.0006 5 7 1.6246 -2.4568 -0.0006 6 6 2.4018 -3.4910 -0.0006 7 7 1.9738 -4.8117 -0.0001 8 6 2.8763 -5.8126 0.0003 9 8 4.0654 -5.5589 -0.0001 10 7 2.4608 -7.0947 0.0063 11 6 1.0563 -7.5427 0.0136 12 6 1.0942 -8.9686 -0.5962 13 6 2.4191 -9.5213 -0.0077 14 8 2.2149 -10.0210 1.3154 15 6 2.9960 -10.5924 -0.8969 16 1 2.4460 -10.9294 -1.7631 17 6 4.2263 -11.1423 -0.6047 18 7 4.8964 -10.7316 0.4497 19 14 4.9417 -12.4695 -1.7074 20 1 3.9988 -12.7504 -2.8196 21 1 6.2381 -12.0053 -2.2635 22 1 5.1575 -13.7074 -0.9160 23 6 3.3331 -8.2781 0.0133 24 16 4.0826 -2.9718 0.0061 25 6 3.6006 -1.3314 -0.0011 26 6 4.5318 -0.1466 -0.0018 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 1.0251 -5.0141 -0.0001 31 1 0.6734 -7.5739 1.0337 32 1 0.4447 -6.8833 -0.6021 33 1 1.1361 -8.9306 -1.6848 34 1 0.2413 -9.5582 -0.2601 35 1 3.0259 -10.3075 1.7572 36 1 5.7617 -11.1186 0.6554 37 1 3.9721 -8.2728 -0.8698 38 1 3.9465 -8.2813 0.9144 39 1 4.7566 0.1394 1.0257 40 1 5.4558 -0.4109 -0.5159 41 1 4.0563 0.6889 -0.5157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466606739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:43 Heat of formation + Delta-G solvation = -82.800405 kcal Electronic energy + Delta-G solvation = -26841.279064 eV Core-core repulsion = 22847.698560 eV Total energy + Delta-G solvation = -3993.580504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91943 -41.23877 -39.66666 -39.10486 -36.28031 -36.03031 -34.22262 -33.25871 -31.86339 -31.35750 -29.64345 -28.11966 -26.97013 -25.23318 -24.67795 -23.06907 -21.93420 -21.48411 -20.27088 -19.22591 -19.08402 -18.42478 -18.16257 -17.44587 -17.08137 -16.79400 -16.51992 -16.35935 -16.17618 -15.51890 -15.42785 -14.84349 -14.79389 -14.76933 -14.22502 -14.14273 -13.89354 -13.63816 -13.51310 -13.35299 -13.20487 -12.99692 -12.93615 -12.83183 -12.50925 -12.36113 -12.25044 -12.10873 -11.96176 -11.56665 -11.18559 -11.07158 -10.65976 -10.63677 -10.39328 -10.30347 -9.86571 -9.19294 -8.26525 -6.41184 -0.60394 -0.11261 0.43271 0.66234 1.02599 1.41338 1.45976 1.55039 1.69382 2.10571 2.37603 2.55056 3.00958 3.05931 3.56424 3.75606 3.83725 4.00028 4.12446 4.16548 4.31577 4.35510 4.55902 4.60740 4.67905 4.68462 4.69532 4.79389 4.93588 4.99652 5.06116 5.07790 5.11700 5.23271 5.33681 5.44445 5.62775 5.75008 6.06351 6.15272 6.50537 6.63946 6.69890 7.03345 7.28462 7.36288 8.79517 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.002574 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.078384 B =10877.084120 C =11623.666896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.434 3.566 3 O -0.478 6.478 4 C -0.040 4.040 5 N -0.468 5.468 6 C 0.266 3.734 7 N -0.618 5.618 8 C 0.714 3.286 9 O -0.595 6.595 10 N -0.615 5.615 11 C 0.098 3.902 12 C -0.110 4.110 13 C 0.233 3.767 14 O -0.586 6.586 15 C -0.554 4.554 16 H 0.067 0.933 17 C 0.028 3.972 18 N -0.913 5.913 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.280 1.280 23 C 0.139 3.861 24 S 0.267 5.733 25 C -0.230 4.230 26 C -0.081 4.081 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.433 0.567 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.376 0.624 36 H 0.270 0.730 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 16.140 -1.001 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.312 3.688 3 O -0.355 6.355 4 C -0.172 4.172 5 N -0.191 5.191 6 C -0.105 4.105 7 N -0.273 5.273 8 C 0.414 3.586 9 O -0.475 6.475 10 N -0.350 5.350 11 C -0.023 4.023 12 C -0.148 4.148 13 C 0.192 3.808 14 O -0.394 6.394 15 C -0.592 4.592 16 H 0.086 0.914 17 C -0.173 4.173 18 N -0.552 5.552 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.206 1.206 23 C 0.016 3.984 24 S 0.520 5.480 25 C -0.355 4.355 26 C -0.140 4.140 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.275 0.725 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.225 0.775 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.094 16.304 -1.038 17.810 hybrid contribution 0.492 -0.677 -0.194 0.859 sum -6.602 15.627 -1.232 17.009 Atomic orbital electron populations 1.22077 0.90068 1.05335 1.05923 1.21916 0.93029 0.84460 0.69412 1.90515 1.72786 1.33498 1.38675 1.20844 0.90755 0.93531 1.12041 1.66952 1.35331 0.96197 1.20593 1.23863 0.94435 0.88287 1.03964 1.41477 1.11287 0.99770 1.74804 1.15387 0.84118 0.80307 0.78760 1.90821 1.15760 1.81624 1.59322 1.47840 1.10502 1.02671 1.73984 1.22669 0.80651 0.96673 1.02315 1.22772 0.97645 0.94016 1.00353 1.19724 0.91281 0.88385 0.81364 1.86109 1.37863 1.84866 1.30568 1.21832 1.03859 1.21680 1.11833 0.91439 1.25749 0.96919 0.98315 0.96326 1.69781 1.14792 1.43327 1.27319 0.85486 0.78056 0.78909 0.79062 1.18977 1.21095 1.20577 1.22572 0.93114 0.83244 0.99502 1.85434 1.04230 0.92139 1.66223 1.26864 0.99023 1.04505 1.05132 1.20522 0.96649 0.92636 1.04145 0.87780 0.88825 0.87764 0.72522 0.90046 0.87506 0.89500 0.88885 0.77477 0.92085 0.94064 0.94278 0.89260 0.89758 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 9.93 71.24 0.71 -1.89 16 2 C 0.43 9.60 7.21 27.79 0.20 9.80 16 3 O -0.48 -12.21 14.77 -3.33 -0.05 -12.26 16 4 C -0.04 -1.00 6.65 40.50 0.27 -0.73 16 5 N -0.47 -12.02 10.33 -186.95 -1.93 -13.96 16 6 C 0.27 7.45 8.34 179.34 1.50 8.94 16 7 N -0.62 -16.71 5.36 -323.95 -1.74 -18.44 16 8 C 0.71 24.91 8.45 179.06 1.51 26.42 16 9 O -0.60 -24.59 14.15 -3.98 -0.06 -24.65 16 10 N -0.62 -21.89 3.32 -829.34 -2.76 -24.64 16 11 C 0.10 2.70 6.58 86.93 0.57 3.27 16 12 C -0.11 -3.67 6.24 32.07 0.20 -3.47 16 13 C 0.23 10.28 0.85 -10.35 -0.01 10.27 16 14 O -0.59 -27.30 13.07 -148.98 -1.95 -29.25 16 15 C -0.55 -27.16 8.13 25.60 0.21 -26.95 16 16 H 0.07 3.24 7.78 -2.91 -0.02 3.22 16 17 C 0.03 1.40 5.28 84.66 0.45 1.85 16 18 N -0.91 -47.10 10.96 21.45 0.24 -46.86 16 19 Si 0.96 40.31 29.54 68.60 2.03 42.34 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.14 6.21 5.23 86.73 0.45 6.67 16 24 S 0.27 7.50 20.22 -56.49 -1.14 6.36 16 25 C -0.23 -5.73 6.42 25.25 0.16 -5.57 16 26 C -0.08 -1.62 9.62 71.24 0.69 -0.94 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.14 8.12 -2.38 -0.02 1.12 16 29 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.43 8.88 7.30 -92.71 -0.68 8.21 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.11 2.00 7.29 -2.39 -0.02 1.99 16 33 H 0.09 2.77 8.05 -2.38 -0.02 2.75 16 34 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.38 18.47 7.45 -74.06 -0.55 17.92 16 36 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 37 H 0.04 2.06 7.82 -2.38 -0.02 2.04 16 38 H 0.04 1.96 7.92 -2.39 -0.02 1.94 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 2.00 5.96 -2.38 -0.01 1.98 16 Total: -1.00 -61.07 356.84 -0.58 -61.64 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.12 Total: 32.05 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: 6.91 Total: 27.67 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -6.19 Total: -103.90 kcal Atomic # 8 Polarization: -64.10 SS G_CDS: -2.05 Total: -66.15 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 7.50 SS G_CDS: -1.14 Total: 6.36 kcal Total: -61.07 -0.58 -61.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466606739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.158 kcal (2) G-P(sol) polarization free energy of solvation -61.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds