Wall clock time and date at job start Tue Mar 31 2020 22:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47046 * 2 1 4 4 C 1.50697 * 109.46968 * 239.99596 * 2 1 3 5 5 H 1.07999 * 120.00267 * 239.99955 * 4 2 1 6 6 C 1.37878 * 119.99930 * 60.00798 * 4 2 1 7 7 N 1.31517 * 120.00010 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00312 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46802 * 89.99281 * 8 6 4 10 10 H 1.48491 * 109.47495 * 209.99387 * 8 6 4 11 11 H 1.48497 * 109.46796 * 329.99876 * 8 6 4 12 12 C 1.53005 * 109.46744 * 120.00040 * 2 1 3 13 13 S 1.81402 * 109.47186 * 299.99853 * 12 2 1 14 14 O 1.42100 * 110.54206 * 68.37873 * 13 12 2 15 15 O 1.42103 * 110.54219 * 291.63144 * 13 12 2 16 16 N 1.65597 * 104.44944 * 180.02562 * 13 12 2 17 17 C 1.46497 * 120.00128 * 64.99707 * 16 13 12 18 18 C 1.50700 * 109.47056 * 164.99977 * 17 16 13 19 19 C 1.40075 * 119.02547 * 90.00382 * 18 17 16 20 20 C 1.35594 * 121.94193 * 180.25975 * 19 18 17 21 21 C 1.40843 * 119.39208 * 359.49690 * 20 19 18 22 22 N 1.31010 * 138.56646 * 180.18278 * 21 20 19 23 23 O 1.21472 * 109.09162 * 180.25020 * 22 21 20 24 24 N 1.21473 * 116.28370 * 0.02562 * 23 22 21 25 25 C 1.31015 * 109.09024 * 359.97438 * 24 23 22 26 26 C 1.35596 * 119.03054 * 269.98081 * 18 17 16 27 27 H 1.09002 * 109.47231 * 299.99779 * 1 2 3 28 28 H 1.09005 * 109.47030 * 60.00298 * 1 2 3 29 29 H 1.09005 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47107 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47159 * 299.99992 * 3 2 1 32 32 H 1.09002 * 109.46926 * 60.00034 * 3 2 1 33 33 H 0.96996 * 120.00204 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46743 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47501 * 60.00240 * 12 2 1 36 36 H 0.97003 * 119.99789 * 245.00430 * 16 13 12 37 37 H 1.09003 * 109.47046 * 45.00032 * 17 16 13 38 38 H 1.08995 * 109.47337 * 285.00168 * 17 16 13 39 39 H 1.08002 * 119.02537 * 359.97305 * 19 18 17 40 40 H 1.08000 * 120.30467 * 179.72038 * 20 19 18 41 41 H 1.08001 * 120.30270 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4122 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7567 -3.7119 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0539 -0.7400 3.9937 17 6 3.5024 -0.7964 4.2055 18 6 3.7877 -1.3242 5.5879 19 6 3.9364 -2.7050 5.7709 20 6 4.1888 -3.2441 6.9892 21 6 4.3170 -2.3967 8.1069 22 7 4.5499 -2.4950 9.3924 23 8 4.5423 -1.3841 9.8836 24 7 4.3312 -0.4609 9.1228 25 6 4.1597 -0.9335 7.9129 26 6 3.8935 -0.4485 6.6177 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7090 1.1613 -3.4844 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2493 36 1 1.4572 -1.2147 4.5933 37 1 3.9236 0.2038 4.1043 38 1 3.9526 -1.4568 3.4644 39 1 3.8427 -3.3599 4.9172 40 1 4.2942 -4.3131 7.1009 41 1 3.7748 0.6112 6.4463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475762468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:02 Heat of formation + Delta-G solvation = 66.365586 kcal Electronic energy + Delta-G solvation = -26996.609580 eV Core-core repulsion = 23009.497399 eV Total energy + Delta-G solvation = -3987.112181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.98402 -39.60587 -36.67321 -36.34416 -35.78762 -35.36892 -35.10978 -33.12661 -31.72538 -31.57419 -27.52800 -26.71066 -25.77392 -25.54543 -25.28089 -23.64709 -21.72614 -19.78604 -19.26006 -19.23016 -18.90218 -18.34587 -17.46427 -16.69096 -15.97522 -15.63474 -15.38661 -15.17666 -14.84933 -14.78733 -14.60474 -13.59637 -13.50097 -13.25298 -13.15057 -13.02096 -12.75957 -12.56950 -12.22406 -12.16271 -12.13430 -11.85332 -11.55359 -11.47281 -11.16460 -11.12083 -11.00162 -10.77313 -10.45229 -10.33878 -10.20765 -10.16072 -9.77311 -9.71114 -9.41274 -9.00993 -8.74097 -8.45316 -6.08667 -4.21069 -0.42940 0.58204 0.82375 1.54031 2.71662 2.75099 3.06264 3.21513 3.21891 3.29717 3.30876 3.37906 4.02242 4.20752 4.24399 4.32628 4.37338 4.66334 4.68171 4.83075 5.06562 5.10004 5.16731 5.20946 5.41172 5.48568 5.56344 5.61079 5.77262 5.86780 5.96890 6.29762 6.63677 6.73550 6.83912 6.90199 7.00135 7.25750 7.44377 7.62648 7.92905 8.03810 8.08733 8.27135 8.77515 9.44779 10.92632 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.002498 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.679840 B =11205.751427 C =11759.957526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.581 4.581 13 S 2.591 3.409 14 O -0.961 6.961 15 O -0.962 6.962 16 N -1.129 6.129 17 C 0.152 3.848 18 C -0.060 4.060 19 C -0.068 4.068 20 C -0.072 4.072 21 C 0.019 3.981 22 N -0.349 5.349 23 O 0.377 5.623 24 N -0.342 5.342 25 C 0.016 3.984 26 C -0.047 4.047 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.414 0.586 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 -7.132 17.117 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.715 4.715 13 S 2.690 3.310 14 O -0.951 6.951 15 O -0.952 6.952 16 N -0.885 5.885 17 C 0.026 3.974 18 C -0.066 4.066 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.133 4.133 22 N -0.071 5.071 23 O 0.138 5.862 24 N -0.063 5.063 25 C -0.136 4.136 26 C -0.069 4.069 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.247 0.753 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.748 -5.937 18.116 20.223 hybrid contribution 0.337 -1.419 -1.671 2.218 sum 7.085 -7.356 16.445 19.358 Atomic orbital electron populations 1.22288 0.96921 1.00675 1.02367 1.17932 0.92827 0.92220 0.89024 1.22282 0.99725 0.97792 1.02411 1.20927 1.31841 1.12112 0.89364 0.92278 1.24943 0.94879 0.94956 0.98967 1.69797 1.36226 1.22522 1.23552 0.86533 0.79163 0.79380 0.82540 1.20652 1.21127 1.19950 1.30524 1.11258 1.12946 1.16723 1.05748 0.74479 0.75233 0.75587 1.93568 1.29309 1.86571 1.85671 1.93546 1.78115 1.38034 1.85468 1.55988 1.13051 1.71474 1.48010 1.20292 0.81686 1.02970 0.92464 1.19689 0.98193 0.93167 0.95555 1.21008 0.95884 0.94535 0.97569 1.19942 1.01265 0.99536 0.88463 1.22964 1.03694 0.94730 0.91923 1.75231 1.18466 1.03926 1.09433 1.85387 1.58739 1.07028 1.35012 1.75258 1.16704 1.12852 1.01457 1.22873 1.04531 0.91612 0.94566 1.19967 0.98659 1.01553 0.86674 0.95375 0.88622 0.94432 0.94424 0.88648 0.95305 0.92691 0.86347 0.86109 0.75341 0.88520 0.89743 0.83151 0.83371 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 7.77 37.16 0.29 -3.60 16 2 C 0.08 1.88 0.52 -155.66 -0.08 1.80 16 3 C -0.16 -3.84 7.78 37.16 0.29 -3.56 16 4 C -0.50 -12.59 8.01 -34.44 -0.28 -12.87 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.06 1.66 5.15 -17.82 -0.09 1.57 16 7 N -0.88 -23.44 9.35 55.43 0.52 -22.92 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.95 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 C -0.58 -10.11 5.01 37.16 0.19 -9.92 16 13 S 2.59 42.79 4.49 -107.50 -0.48 42.31 16 14 O -0.96 -18.76 15.70 -57.54 -0.90 -19.66 16 15 O -0.96 -18.31 15.12 -57.54 -0.87 -19.18 16 16 N -1.13 -12.52 5.88 -11.66 -0.07 -12.59 16 17 C 0.15 1.32 6.20 -5.20 -0.03 1.29 16 18 C -0.06 -0.47 5.24 -104.88 -0.55 -1.02 16 19 C -0.07 -0.42 9.51 -39.84 -0.38 -0.80 16 20 C -0.07 -0.50 10.08 -39.54 -0.40 -0.90 16 21 C 0.02 0.19 7.76 -83.03 -0.64 -0.46 16 22 N -0.35 -3.63 12.29 31.88 0.39 -3.24 16 23 O 0.38 3.88 11.67 26.94 0.31 4.19 16 24 N -0.34 -3.78 12.29 31.88 0.39 -3.38 16 25 C 0.02 0.17 7.76 -83.03 -0.64 -0.47 16 26 C -0.05 -0.43 9.65 -39.54 -0.38 -0.81 16 27 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 28 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 32 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.12 1.78 8.14 -51.92 -0.42 1.36 16 35 H 0.12 1.88 8.14 -51.93 -0.42 1.45 16 36 H 0.41 3.93 8.61 -34.47 -0.30 3.63 16 37 H 0.10 0.87 7.61 -51.93 -0.39 0.47 16 38 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 39 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -32.02 348.22 -8.00 -40.03 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.81 Total: 4.00 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -2.71 Total: -29.76 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 1.23 Total: -42.13 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.46 Total: -34.64 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 42.79 SS G_CDS: -0.48 Total: 42.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.02 -8.00 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475762468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.392 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds