Wall clock time and date at job start Tue Mar 31 2020 22:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47046 * 2 1 4 4 C 1.50697 * 109.46968 * 239.99596 * 2 1 3 5 5 H 1.07999 * 120.00267 * 239.99955 * 4 2 1 6 6 C 1.37878 * 119.99930 * 60.00798 * 4 2 1 7 7 N 1.31517 * 120.00010 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00312 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46802 * 89.99281 * 8 6 4 10 10 H 1.48491 * 109.47495 * 209.99387 * 8 6 4 11 11 H 1.48497 * 109.46796 * 329.99876 * 8 6 4 12 12 C 1.53005 * 109.46744 * 120.00040 * 2 1 3 13 13 S 1.81402 * 109.47186 * 299.99853 * 12 2 1 14 14 O 1.42100 * 110.54206 * 68.37873 * 13 12 2 15 15 O 1.42103 * 110.54219 * 291.63144 * 13 12 2 16 16 N 1.65597 * 104.44944 * 180.02562 * 13 12 2 17 17 C 1.46497 * 120.00128 * 64.99707 * 16 13 12 18 18 C 1.50700 * 109.47056 * 164.99977 * 17 16 13 19 19 C 1.40075 * 119.02547 * 90.00382 * 18 17 16 20 20 C 1.35594 * 121.94193 * 180.25975 * 19 18 17 21 21 C 1.40843 * 119.39208 * 359.49690 * 20 19 18 22 22 N 1.31010 * 138.56646 * 180.18278 * 21 20 19 23 23 O 1.21472 * 109.09162 * 180.25020 * 22 21 20 24 24 N 1.21473 * 116.28370 * 0.02562 * 23 22 21 25 25 C 1.31015 * 109.09024 * 359.97438 * 24 23 22 26 26 C 1.35596 * 119.03054 * 269.98081 * 18 17 16 27 27 H 1.09002 * 109.47231 * 299.99779 * 1 2 3 28 28 H 1.09005 * 109.47030 * 60.00298 * 1 2 3 29 29 H 1.09005 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47107 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47159 * 299.99992 * 3 2 1 32 32 H 1.09002 * 109.46926 * 60.00034 * 3 2 1 33 33 H 0.96996 * 120.00204 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46743 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47501 * 60.00240 * 12 2 1 36 36 H 0.97003 * 119.99789 * 245.00430 * 16 13 12 37 37 H 1.09003 * 109.47046 * 45.00032 * 17 16 13 38 38 H 1.08995 * 109.47337 * 285.00168 * 17 16 13 39 39 H 1.08002 * 119.02537 * 359.97305 * 19 18 17 40 40 H 1.08000 * 120.30467 * 179.72038 * 20 19 18 41 41 H 1.08001 * 120.30270 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4122 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7567 -3.7119 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0539 -0.7400 3.9937 17 6 3.5024 -0.7964 4.2055 18 6 3.7877 -1.3242 5.5879 19 6 3.9364 -2.7050 5.7709 20 6 4.1888 -3.2441 6.9892 21 6 4.3170 -2.3967 8.1069 22 7 4.5499 -2.4950 9.3924 23 8 4.5423 -1.3841 9.8836 24 7 4.3312 -0.4609 9.1228 25 6 4.1597 -0.9335 7.9129 26 6 3.8935 -0.4485 6.6177 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7090 1.1613 -3.4844 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2493 36 1 1.4572 -1.2147 4.5933 37 1 3.9236 0.2038 4.1043 38 1 3.9526 -1.4568 3.4644 39 1 3.8427 -3.3599 4.9172 40 1 4.2942 -4.3131 7.1009 41 1 3.7748 0.6112 6.4463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475762468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:01 Heat of formation + Delta-G solvation = 44.313663 kcal Electronic energy + Delta-G solvation = -26997.565824 eV Core-core repulsion = 23009.497399 eV Total energy + Delta-G solvation = -3988.068425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.70893 -40.23903 -38.07721 -38.05879 -36.87251 -36.52715 -35.85249 -33.85582 -33.58091 -32.22685 -28.37021 -28.15075 -27.63606 -27.19749 -26.19612 -24.35496 -22.39476 -21.36754 -20.25759 -20.00473 -19.90380 -19.09107 -18.69849 -17.86443 -17.54162 -16.87307 -16.59625 -16.34203 -15.96671 -15.61408 -15.42335 -14.98069 -14.61521 -14.37205 -14.33342 -14.06587 -13.85115 -13.74510 -13.62087 -13.19144 -12.96942 -12.96312 -12.88985 -12.85870 -12.73443 -12.65505 -12.43051 -12.14937 -12.13308 -12.08240 -11.89209 -11.50378 -11.33510 -10.83677 -10.66086 -10.37709 -10.31230 -9.63978 -7.99085 -6.17297 -1.10494 -0.56769 0.03116 0.84875 1.46985 1.49651 1.57252 1.90142 2.04328 2.33441 2.35329 2.47602 2.70737 2.92186 3.23894 3.33120 3.45454 3.61801 3.78479 4.06154 4.12935 4.20670 4.27385 4.41644 4.49529 4.66010 4.66661 4.82050 4.83723 4.92726 4.94311 5.03784 5.06627 5.14645 5.27224 5.44100 5.45687 5.56148 5.69820 6.03254 6.10853 6.17620 6.38790 6.88908 7.35159 7.51392 9.00518 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.002498 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.679840 B =11205.751427 C =11759.957526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.069 3.931 3 C -0.162 4.162 4 C -0.512 4.512 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.280 1.280 10 H -0.292 1.292 11 H -0.264 1.264 12 C -0.583 4.583 13 S 2.612 3.388 14 O -0.995 6.995 15 O -0.991 6.991 16 N -1.111 6.111 17 C 0.140 3.860 18 C -0.046 4.046 19 C -0.057 4.057 20 C -0.073 4.073 21 C 0.014 3.986 22 N -0.362 5.362 23 O 0.371 5.629 24 N -0.362 5.362 25 C 0.002 3.998 26 C -0.066 4.066 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.259 0.741 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.424 0.576 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.188 0.812 40 H 0.175 0.825 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.342 -9.610 17.083 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.551 4.551 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.188 1.188 12 C -0.716 4.716 13 S 2.710 3.290 14 O -0.985 6.985 15 O -0.980 6.980 16 N -0.872 5.872 17 C 0.015 3.985 18 C -0.052 4.052 19 C -0.079 4.079 20 C -0.093 4.093 21 C -0.139 4.139 22 N -0.086 5.086 23 O 0.135 5.865 24 N -0.084 5.084 25 C -0.149 4.149 26 C -0.087 4.087 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.260 0.740 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.205 0.795 40 H 0.193 0.807 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.032 -8.417 18.099 21.516 hybrid contribution -0.045 -0.654 -1.628 1.755 sum 7.987 -9.071 16.471 20.429 Atomic orbital electron populations 1.22237 0.98128 1.00504 1.01191 1.17910 0.92068 0.92152 0.91204 1.22219 1.00044 0.98460 1.01223 1.21336 1.31365 1.12226 0.90217 0.91331 1.25681 0.95319 0.95635 1.01738 1.69955 1.37427 1.23830 1.23685 0.85648 0.78990 0.78148 0.79368 1.20639 1.21777 1.18784 1.30437 1.13125 1.13510 1.14566 1.04786 0.73445 0.74862 0.75927 1.93517 1.31689 1.87024 1.86287 1.93510 1.78413 1.40108 1.86002 1.55434 1.14515 1.70917 1.46339 1.20648 0.79919 1.04065 0.93841 1.19705 0.97076 0.93856 0.94547 1.21369 0.94144 0.93972 0.98409 1.20347 1.00751 1.00594 0.87642 1.23428 1.03302 0.94906 0.92251 1.75187 1.19267 1.04035 1.10092 1.85362 1.59187 1.06984 1.34995 1.75203 1.17597 1.13419 1.02139 1.23144 1.04752 0.92315 0.94734 1.20103 0.99912 1.02047 0.86652 0.94961 0.91412 0.94006 0.93713 0.91506 0.94847 0.93128 0.83530 0.83803 0.74004 0.88848 0.86144 0.79521 0.80743 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.67 7.77 71.98 0.56 -7.11 16 2 C 0.07 3.05 0.52 -52.93 -0.03 3.02 16 3 C -0.16 -7.52 7.78 71.98 0.56 -6.96 16 4 C -0.51 -24.83 8.01 25.60 0.21 -24.63 16 5 H 0.07 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.78 5.15 84.65 0.44 1.22 16 7 N -0.91 -49.02 9.35 21.45 0.20 -48.82 16 8 Si 0.95 40.35 29.54 68.60 2.03 42.38 16 9 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 12 C -0.58 -18.47 5.01 71.98 0.36 -18.11 16 13 S 2.61 80.64 4.49 -56.49 -0.25 80.38 16 14 O -0.99 -37.53 15.70 -127.65 -2.00 -39.53 16 15 O -0.99 -36.34 15.12 -127.65 -1.93 -38.27 16 16 N -1.11 -20.89 5.88 -190.80 -1.12 -22.02 16 17 C 0.14 1.88 6.20 85.63 0.53 2.41 16 18 C -0.05 -0.57 5.24 -20.03 -0.11 -0.67 16 19 C -0.06 -0.46 9.51 22.10 0.21 -0.25 16 20 C -0.07 -0.77 10.08 22.30 0.22 -0.55 16 21 C 0.01 0.24 7.76 42.63 0.33 0.57 16 22 N -0.36 -7.35 12.29 -57.45 -0.71 -8.06 16 23 O 0.37 7.74 11.67 139.34 1.63 9.36 16 24 N -0.36 -8.08 12.29 -57.43 -0.71 -8.79 16 25 C 0.00 0.05 7.76 42.62 0.33 0.38 16 26 C -0.07 -1.09 9.65 22.30 0.22 -0.87 16 27 H 0.03 1.45 5.46 -2.39 -0.01 1.44 16 28 H 0.07 3.56 6.07 -2.38 -0.01 3.54 16 29 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 32 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 33 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.42 6.60 8.61 -96.74 -0.83 5.77 16 37 H 0.09 1.39 7.61 -2.39 -0.02 1.37 16 38 H 0.12 0.84 8.07 -2.39 -0.02 0.82 16 39 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 40 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -70.42 348.22 1.22 -69.21 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.25 Total: 15.69 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 3.83 Total: -51.54 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.33 Total: -87.68 kcal Atomic # 8 Polarization: -66.13 SS G_CDS: -2.31 Total: -68.44 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 80.64 SS G_CDS: -0.25 Total: 80.38 kcal Total: -70.42 1.22 -69.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475762468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.521 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds