Wall clock time and date at job start Tue Mar 31 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 108.90047 * 2 1 4 4 C 1.34781 * 119.99970 * 300.70570 * 3 2 1 5 5 O 1.21576 * 119.99951 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99895 * 179.97438 * 4 3 2 7 7 C 1.39247 * 120.00141 * 185.41917 * 6 4 3 8 8 C 1.39680 * 119.57606 * 185.42378 * 7 6 4 9 9 C 1.38647 * 119.49289 * 179.97438 * 8 7 6 10 10 C 1.38346 * 118.67469 * 359.97438 * 9 8 7 11 11 C 1.40577 * 119.13113 * 359.97438 * 10 9 8 12 12 C 1.41327 * 119.78856 * 179.72074 * 11 10 9 13 13 H 1.08006 * 120.00298 * 354.60939 * 12 11 10 14 14 C 1.40028 * 120.00341 * 174.61042 * 12 11 10 15 15 N 1.30746 * 119.99487 * 354.62366 * 14 12 11 16 16 Si 1.86800 * 120.00539 * 174.62916 * 14 12 11 17 17 H 1.48497 * 109.46891 * 94.99725 * 16 14 12 18 18 H 1.48500 * 109.47096 * 214.99637 * 16 14 12 19 19 H 1.48499 * 109.46743 * 334.99952 * 16 14 12 20 20 N 1.31904 * 119.57096 * 5.41322 * 7 6 4 21 21 C 1.52979 * 108.93334 * 241.31920 * 2 1 3 22 22 C 1.54781 * 108.82802 * 209.42970 * 21 2 1 23 23 S 1.83844 * 101.16406 * 41.86466 * 22 21 2 24 24 O 1.42097 * 109.61843 * 211.08148 * 23 22 21 25 25 O 1.42099 * 109.78065 * 77.16497 * 23 22 21 26 26 C 1.53620 * 108.93220 * 118.68546 * 2 1 3 27 27 H 1.09003 * 109.46827 * 59.30052 * 1 2 3 28 28 H 1.09006 * 109.46961 * 179.29415 * 1 2 3 29 29 H 1.08995 * 109.47173 * 299.29564 * 1 2 3 30 30 H 0.97000 * 120.00438 * 120.69660 * 3 2 1 31 31 H 0.97001 * 119.99687 * 5.41290 * 6 4 3 32 32 H 1.07993 * 120.25448 * 0.02562 * 8 7 6 33 33 H 1.08004 * 120.65966 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.43695 * 180.02562 * 10 9 8 35 35 H 0.97005 * 120.00070 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.64974 * 329.31368 * 21 2 1 37 37 H 1.08998 * 109.65026 * 89.62445 * 21 2 1 38 38 H 1.09000 * 111.06764 * 283.90750 * 22 21 2 39 39 H 1.08996 * 111.15173 * 159.85796 * 22 21 2 40 40 H 1.08992 * 110.26985 * 241.93394 * 26 2 1 41 41 H 1.08999 * 110.26864 * 3.91241 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0045 1.3860 0.0000 4 6 1.6589 2.2166 -1.0036 5 8 0.9538 1.8155 -1.9091 6 7 2.0951 3.4919 -1.0033 7 6 1.6480 4.3809 -1.9774 8 6 2.1906 5.6665 -2.0386 9 6 1.7445 6.5501 -3.0095 10 6 0.7689 6.1270 -3.8943 11 6 0.2632 4.8201 -3.7818 12 6 -0.7379 4.3753 -4.6746 13 1 -1.1742 5.0638 -5.3833 14 6 -1.1643 3.0419 -4.6406 15 7 -0.5647 2.1837 -3.8574 16 14 -2.5896 2.4893 -5.7143 17 1 -2.0633 1.9179 -6.9799 18 1 -3.3793 1.4571 -4.9958 19 1 -3.4589 3.6536 -6.0206 20 7 0.7178 3.9979 -2.8305 21 6 2.0264 -0.6945 -1.2695 22 6 3.3954 -1.3541 -0.9753 23 16 3.0954 -2.0685 0.6918 24 8 4.3080 -2.0772 1.4324 25 8 2.3242 -3.2562 0.5743 26 6 2.0284 -0.6975 1.2748 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3633 -1.0277 -0.0127 29 1 -0.3633 0.5028 0.8962 30 1 2.5674 1.7060 0.7223 31 1 2.7204 3.7904 -0.3245 32 1 2.9522 5.9697 -1.3356 33 1 2.1513 7.5485 -3.0742 34 1 0.4010 6.7916 -4.6620 35 1 -0.8598 1.2600 -3.8341 36 1 1.3103 -1.4579 -1.5735 37 1 2.1389 0.0386 -2.0682 38 1 4.1907 -0.6093 -0.9453 39 1 3.6199 -2.1350 -1.7018 40 1 2.6059 -0.0025 1.8842 41 1 1.1860 -1.0890 1.8450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477033821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:38 Heat of formation + Delta-G solvation = -24.681716 kcal Electronic energy + Delta-G solvation = -28140.412387 eV Core-core repulsion = 24149.352098 eV Total energy + Delta-G solvation = -3991.060289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.16249 -38.37205 -37.27822 -36.69376 -36.18718 -34.08573 -33.09837 -32.38241 -30.61426 -30.29446 -28.76542 -27.94185 -25.56955 -24.12447 -22.63069 -21.42133 -20.50633 -19.45590 -19.08186 -18.07316 -17.50337 -16.88443 -16.62021 -16.12397 -15.89185 -15.11012 -14.87243 -14.61803 -14.45410 -14.06539 -13.99227 -13.58917 -13.53327 -13.18530 -12.92277 -12.64506 -12.50401 -12.35757 -12.23588 -12.02144 -11.90844 -11.83767 -11.47064 -11.30459 -11.14935 -10.97507 -10.87021 -10.68501 -10.50674 -10.44922 -9.98509 -9.71960 -9.06698 -9.06162 -8.66825 -7.99894 -7.28407 -6.99226 -6.20458 -4.41608 -0.16261 2.23847 2.79290 3.03567 3.08381 3.15174 3.17405 3.24163 3.36314 3.76211 4.03130 4.04006 4.12615 4.43113 4.54458 4.58736 4.64607 4.85448 4.91717 5.22975 5.35124 5.49709 5.75115 5.79090 5.95622 6.00213 6.05861 6.25316 6.42747 6.53266 6.57657 6.73368 6.81582 6.85670 7.17817 7.28147 7.57495 7.66932 7.78177 8.12513 8.24461 8.56600 8.74940 9.01995 9.45283 10.20543 10.44003 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.003794 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.913009 B = 7378.195992 C = 8841.083941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.217 3.783 3 N -0.754 5.754 4 C 0.667 3.333 5 O -0.457 6.457 6 N -0.673 5.673 7 C 0.386 3.614 8 C -0.358 4.358 9 C -0.035 4.035 10 C -0.306 4.306 11 C 0.274 3.726 12 C -0.426 4.426 13 H 0.081 0.919 14 C 0.060 3.940 15 N -0.652 5.652 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.264 1.264 20 N -0.472 5.472 21 C -0.138 4.138 22 C -0.568 4.568 23 S 2.378 3.622 24 O -0.943 6.943 25 O -0.932 6.932 26 C -0.594 4.594 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.386 0.614 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.271 0.729 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 -6.651 9.410 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.129 3.871 3 N -0.416 5.416 4 C 0.365 3.635 5 O -0.322 6.322 6 N -0.321 5.321 7 C 0.147 3.853 8 C -0.384 4.384 9 C -0.060 4.060 10 C -0.330 4.330 11 C 0.149 3.851 12 C -0.457 4.457 13 H 0.100 0.900 14 C -0.169 4.169 15 N -0.271 5.271 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.188 1.188 20 N -0.191 5.191 21 C -0.178 4.178 22 C -0.699 4.699 23 S 2.562 3.438 24 O -0.940 6.940 25 O -0.930 6.930 26 C -0.723 4.723 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.219 0.781 31 H 0.228 0.772 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.788 -9.033 9.101 13.687 hybrid contribution 0.165 1.800 0.028 1.807 sum 4.953 -7.233 9.129 12.657 Atomic orbital electron populations 1.22452 0.92478 1.02661 1.05254 1.19892 0.96137 0.81477 0.89597 1.45650 1.58038 1.10600 1.27266 1.16382 0.82445 0.81123 0.83510 1.91323 1.34996 1.72981 1.32870 1.42590 1.48457 1.09247 1.31832 1.18293 0.92543 0.85617 0.88887 1.20431 1.12750 0.95899 1.09292 1.20549 0.95052 0.96644 0.93712 1.21630 1.06404 0.99486 1.05444 1.18345 0.90546 0.86831 0.89390 1.19563 1.16276 0.94994 1.14819 0.90042 1.26131 0.97497 0.97289 0.95985 1.70293 1.30700 1.02739 1.23354 0.86543 0.81886 0.79262 0.80512 1.19799 1.20273 1.18758 1.68584 1.12114 1.33243 1.05122 1.22600 0.92344 1.02479 1.00370 1.30459 1.06109 1.12243 1.21100 1.09471 0.76615 0.77786 0.79928 1.93601 1.43247 1.87377 1.69808 1.93631 1.71261 1.42067 1.85996 1.30795 1.16429 1.18581 1.06487 0.87873 0.91854 0.92376 0.78054 0.77193 0.89199 0.88658 0.88607 0.91689 0.88683 0.85475 0.84677 0.84532 0.83965 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 7.85 37.16 0.29 -1.89 16 2 C 0.22 2.42 0.94 -131.51 -0.12 2.30 16 3 N -0.75 -9.15 5.09 -52.13 -0.27 -9.42 16 4 C 0.67 11.82 7.65 -86.91 -0.67 11.15 16 5 O -0.46 -9.95 8.49 5.30 0.04 -9.91 16 6 N -0.67 -12.09 5.39 -15.78 -0.09 -12.17 16 7 C 0.39 8.90 7.41 -155.00 -1.15 7.75 16 8 C -0.36 -7.70 9.96 -38.89 -0.39 -8.09 16 9 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 10 C -0.31 -7.51 9.83 -38.66 -0.38 -7.89 16 11 C 0.27 7.42 6.53 -85.00 -0.56 6.87 16 12 C -0.43 -11.34 9.13 -37.74 -0.34 -11.69 16 13 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 14 C 0.06 1.52 5.48 -17.34 -0.10 1.43 16 15 N -0.65 -16.92 9.13 55.55 0.51 -16.41 16 16 Si 0.89 18.63 29.56 -169.99 -5.03 13.60 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 20 N -0.47 -12.54 5.80 -10.26 -0.06 -12.60 16 21 C -0.14 -1.62 5.09 -25.80 -0.13 -1.75 16 22 C -0.57 -5.04 7.45 38.10 0.28 -4.76 16 23 S 2.38 22.13 6.04 -107.50 -0.65 21.48 16 24 O -0.94 -11.56 18.16 -57.69 -1.05 -12.61 16 25 O -0.93 -11.75 18.16 -57.69 -1.05 -12.80 16 26 C -0.59 -4.60 6.69 37.48 0.25 -4.35 16 27 H 0.10 1.76 6.04 -51.93 -0.31 1.44 16 28 H 0.06 0.69 8.11 -51.93 -0.42 0.26 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.39 3.38 8.00 -40.82 -0.33 3.05 16 31 H 0.40 5.36 8.72 -40.82 -0.36 5.00 16 32 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 36 H 0.09 1.04 7.81 -51.93 -0.41 0.64 16 37 H 0.13 1.94 5.90 -51.93 -0.31 1.64 16 38 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.14 0.79 7.37 -51.93 -0.38 0.40 16 41 H 0.15 0.92 7.63 -51.93 -0.40 0.53 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -35.79 345.64 -10.82 -46.60 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.99 Total: 11.12 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.41 Total: -12.10 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.10 Total: -50.60 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -2.05 Total: -35.32 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: 22.13 SS G_CDS: -0.65 Total: 21.48 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.79 -10.82 -46.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477033821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.922 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds