Wall clock time and date at job start Tue Mar 31 2020 22:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33691 * 126.27553 * 2 1 4 4 C 1.30620 * 108.99270 * 180.26648 * 3 2 1 5 5 O 1.33658 * 109.16014 * 359.72540 * 4 3 2 6 6 C 1.35349 * 107.68021 * 0.02562 * 5 4 3 7 7 C 1.46720 * 126.64191 * 180.02562 * 6 5 4 8 8 O 1.21693 * 119.99804 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00264 * 0.02562 * 7 6 5 10 10 C 1.47585 * 134.49353 * 180.02562 * 9 7 6 11 11 C 1.53947 * 86.11441 * 155.36057 * 10 9 7 12 12 N 1.46510 * 113.74068 * 269.15382 * 11 10 9 13 13 C 1.46498 * 120.00052 * 58.07625 * 12 11 10 14 14 C 1.34770 * 119.99490 * 238.07607 * 12 11 10 15 15 O 1.21284 * 120.00553 * 0.02562 * 14 12 11 16 16 C 1.50702 * 119.99629 * 180.02562 * 14 12 11 17 17 S 1.81003 * 109.47412 * 180.02562 * 16 14 12 18 18 C 1.76194 * 100.00065 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99684 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47064 * 60.00507 * 22 20 18 24 24 H 1.48498 * 109.46996 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47519 * 300.00397 * 22 20 18 26 26 C 1.47580 * 134.49108 * 0.02562 * 9 7 6 27 27 H 1.08997 * 109.47039 * 270.19851 * 1 2 3 28 28 H 1.08998 * 109.46675 * 30.19740 * 1 2 3 29 29 H 1.08993 * 109.47146 * 150.19500 * 1 2 3 30 30 H 1.08006 * 125.41552 * 179.70518 * 4 3 2 31 31 H 1.08996 * 113.76681 * 41.05704 * 10 9 7 32 32 H 1.08994 * 113.76726 * 269.66003 * 10 9 7 33 33 H 1.09002 * 113.73955 * 137.95260 * 11 10 9 34 34 H 1.08999 * 109.47079 * 89.99894 * 13 12 11 35 35 H 1.08993 * 109.47138 * 209.99833 * 13 12 11 36 36 H 1.09006 * 109.46966 * 329.99946 * 13 12 11 37 37 H 1.09007 * 109.47021 * 300.00003 * 16 14 12 38 38 H 1.08991 * 109.47444 * 59.99823 * 16 14 12 39 39 H 0.97003 * 120.00158 * 179.97438 * 21 20 18 40 40 H 1.08996 * 113.77201 * 90.33634 * 26 9 7 41 41 H 1.09002 * 113.76575 * 318.93589 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6897 -0.0057 5 8 3.5890 -0.6461 -0.0035 6 6 2.3137 -1.0992 0.0033 7 6 1.8826 -2.5017 0.0084 8 8 0.6965 -2.7736 0.0140 9 7 2.8003 -3.4887 0.0069 10 6 2.7336 -4.9631 0.0102 11 6 4.1305 -4.9233 -0.6355 12 7 4.1029 -4.9051 -2.1003 13 6 3.3943 -3.8348 -2.8063 14 6 4.7294 -5.8731 -2.7980 15 8 5.3157 -6.7594 -2.2135 16 6 4.7016 -5.8540 -4.3047 17 16 5.6240 -7.2744 -4.9432 18 6 5.4326 -7.0102 -6.6747 19 1 4.8716 -6.1595 -7.0324 20 6 6.0028 -7.8956 -7.5790 21 7 6.6860 -8.9327 -7.1431 22 14 5.7992 -7.6159 -9.4147 23 1 6.3834 -6.3013 -9.7829 24 1 6.4979 -8.6936 -10.1600 25 1 4.3551 -7.6302 -9.7605 26 6 4.2756 -3.5294 0.0014 27 1 -0.3633 0.0036 1.0276 28 1 -0.3632 0.8882 -0.5169 29 1 -0.3633 -0.8917 -0.5108 30 1 4.4044 1.3443 -0.0117 31 1 1.9598 -5.3692 -0.6412 32 1 2.7234 -5.4001 1.0087 33 1 4.8214 -5.6640 -0.2327 34 1 4.0782 -3.0063 -2.9906 35 1 3.0180 -4.2135 -3.7565 36 1 2.5595 -3.4883 -2.1970 37 1 3.6689 -5.9071 -4.6497 38 1 5.1580 -4.9322 -4.6649 39 1 7.0842 -9.5517 -7.7750 40 1 4.7184 -3.5453 0.9972 41 1 4.7329 -2.7909 -0.6572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506258626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:10 Heat of formation + Delta-G solvation = 9.069985 kcal Electronic energy + Delta-G solvation = -26704.170745 eV Core-core repulsion = 22714.574040 eV Total energy + Delta-G solvation = -3989.596705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.86720 -41.11864 -39.21076 -37.95093 -35.73355 -34.57774 -32.46290 -32.12397 -30.63772 -29.01102 -27.87815 -26.81856 -26.54071 -25.52617 -24.15381 -22.46489 -21.67292 -20.30296 -18.94866 -18.19113 -17.73956 -17.43756 -17.08573 -17.02037 -16.44760 -15.84308 -15.61946 -15.32322 -14.97727 -14.83253 -14.19053 -13.93016 -13.70399 -13.57268 -13.49882 -13.38252 -13.12399 -12.70839 -12.61797 -12.56699 -12.41219 -12.10468 -12.02923 -11.56039 -11.51673 -11.27900 -11.08253 -11.06280 -10.80194 -10.42392 -9.86126 -9.63217 -9.45186 -9.09195 -9.07908 -8.71959 -8.29037 -6.54964 -6.25001 -3.96240 0.38647 1.93732 1.98878 2.41370 2.63865 2.74446 2.85188 3.21396 3.21942 3.26762 3.50602 3.57999 3.93787 4.09547 4.17095 4.29339 4.46189 4.79921 4.83566 4.90776 4.98762 5.03534 5.07701 5.10160 5.12278 5.28109 5.29594 5.36030 5.38883 5.47218 5.48694 5.54267 5.61007 5.67816 5.82657 5.89803 6.06986 6.44647 7.01471 7.13535 7.34931 7.55264 7.56103 8.31545 8.38451 9.20330 10.82335 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.002375 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.001274 B =11786.002483 C =12423.203854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.081 3.919 3 N -0.494 5.494 4 C 0.204 3.796 5 O -0.188 6.188 6 C -0.112 4.112 7 C 0.629 3.371 8 O -0.513 6.513 9 N -0.636 5.636 10 C 0.099 3.901 11 C 0.114 3.886 12 N -0.605 5.605 13 C 0.078 3.922 14 C 0.539 3.461 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.093 3.907 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.257 0.743 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.103 0.897 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 18.401 16.971 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 N -0.223 5.223 4 C -0.022 4.022 5 O -0.074 6.074 6 C -0.167 4.167 7 C 0.418 3.582 8 O -0.391 6.391 9 N -0.371 5.371 10 C -0.024 4.024 11 C 0.008 3.992 12 N -0.341 5.341 13 C -0.065 4.065 14 C 0.327 3.673 15 O -0.384 6.384 16 C -0.301 4.301 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.030 4.030 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.273 0.727 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.300 17.494 17.765 25.979 hybrid contribution -0.389 0.972 -1.803 2.085 sum -7.689 18.466 15.962 25.591 Atomic orbital electron populations 1.20411 0.85243 1.04541 1.03768 1.22099 0.98447 0.86295 0.97452 1.70383 1.01354 1.31371 1.19189 1.28385 0.97655 0.79494 0.96624 1.84538 1.29540 1.24325 1.68977 1.22805 0.81510 0.95861 1.16523 1.15893 0.84671 0.80708 0.76963 1.90891 1.15142 1.81620 1.51409 1.50043 1.07770 1.07214 1.72045 1.23822 0.98591 0.78126 1.01862 1.22383 0.97378 0.97698 0.81773 1.47555 1.54746 1.27534 1.04242 1.21823 0.96694 0.90153 0.97874 1.20415 0.77047 0.80235 0.89602 1.90701 1.41822 1.34830 1.71051 1.23564 1.05960 1.07508 0.93028 1.85377 1.67048 1.27130 1.03716 1.22808 1.40070 1.14610 0.90968 0.90974 1.24988 0.94452 0.94432 0.99639 1.70000 1.32224 1.12736 1.35285 0.86224 0.78534 0.78061 0.82691 1.19933 1.20784 1.19911 1.23788 0.79653 0.97716 1.01841 0.89957 0.90296 0.88614 0.72745 0.88935 0.87970 0.85047 0.92814 0.90358 0.91280 0.89101 0.89136 0.92084 0.87920 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.87 36.01 0.36 -0.36 16 2 C 0.08 0.83 7.16 -82.46 -0.59 0.24 16 3 N -0.49 -4.71 11.26 -10.88 -0.12 -4.83 16 4 C 0.20 1.33 13.21 52.25 0.69 2.02 16 5 O -0.19 -1.56 9.36 4.42 0.04 -1.52 16 6 C -0.11 -1.15 7.11 -36.84 -0.26 -1.41 16 7 C 0.63 7.12 7.06 -12.83 -0.09 7.03 16 8 O -0.51 -7.01 15.52 5.20 0.08 -6.93 16 9 N -0.64 -6.10 2.22 -180.08 -0.40 -6.50 16 10 C 0.10 0.89 8.25 -2.97 -0.02 0.87 16 11 C 0.11 1.14 4.52 -70.14 -0.32 0.83 16 12 N -0.61 -7.81 3.09 -175.74 -0.54 -8.36 16 13 C 0.08 0.86 9.24 59.85 0.55 1.41 16 14 C 0.54 9.49 7.69 -10.99 -0.08 9.41 16 15 O -0.51 -10.70 15.34 5.55 0.09 -10.62 16 16 C -0.15 -2.93 4.71 36.01 0.17 -2.76 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 22 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.09 0.73 7.21 -2.98 -0.02 0.71 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.92 6.47 -51.93 -0.34 0.59 16 30 H 0.26 0.30 8.06 -52.48 -0.42 -0.12 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.13 1.38 7.22 -51.93 -0.37 1.00 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 36 H 0.07 0.75 5.33 -51.93 -0.28 0.47 16 37 H 0.09 1.66 7.40 -51.91 -0.38 1.28 16 38 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.73 7.30 -51.93 -0.38 0.35 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -36.47 363.77 -6.31 -42.78 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.01 Total: -2.06 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 0.58 Total: 5.26 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.33 Total: -44.72 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.21 Total: -19.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.47 -6.31 -42.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506258626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.851 kcal (2) G-P(sol) polarization free energy of solvation -36.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds