Wall clock time and date at job start Tue Mar 31 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33691 * 126.27553 * 2 1 4 4 C 1.30620 * 108.99270 * 180.26648 * 3 2 1 5 5 O 1.33658 * 109.16014 * 359.72540 * 4 3 2 6 6 C 1.35349 * 107.68021 * 0.02562 * 5 4 3 7 7 C 1.46720 * 126.64191 * 180.02562 * 6 5 4 8 8 O 1.21693 * 119.99804 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00264 * 0.02562 * 7 6 5 10 10 C 1.47585 * 134.49353 * 180.02562 * 9 7 6 11 11 C 1.53947 * 86.11441 * 155.36057 * 10 9 7 12 12 N 1.46510 * 113.74068 * 269.15382 * 11 10 9 13 13 C 1.46498 * 120.00052 * 58.07625 * 12 11 10 14 14 C 1.34770 * 119.99490 * 238.07607 * 12 11 10 15 15 O 1.21284 * 120.00553 * 0.02562 * 14 12 11 16 16 C 1.50702 * 119.99629 * 180.02562 * 14 12 11 17 17 S 1.81003 * 109.47412 * 180.02562 * 16 14 12 18 18 C 1.76194 * 100.00065 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99684 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47064 * 60.00507 * 22 20 18 24 24 H 1.48498 * 109.46996 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47519 * 300.00397 * 22 20 18 26 26 C 1.47580 * 134.49108 * 0.02562 * 9 7 6 27 27 H 1.08997 * 109.47039 * 270.19851 * 1 2 3 28 28 H 1.08998 * 109.46675 * 30.19740 * 1 2 3 29 29 H 1.08993 * 109.47146 * 150.19500 * 1 2 3 30 30 H 1.08006 * 125.41552 * 179.70518 * 4 3 2 31 31 H 1.08996 * 113.76681 * 41.05704 * 10 9 7 32 32 H 1.08994 * 113.76726 * 269.66003 * 10 9 7 33 33 H 1.09002 * 113.73955 * 137.95260 * 11 10 9 34 34 H 1.08999 * 109.47079 * 89.99894 * 13 12 11 35 35 H 1.08993 * 109.47138 * 209.99833 * 13 12 11 36 36 H 1.09006 * 109.46966 * 329.99946 * 13 12 11 37 37 H 1.09007 * 109.47021 * 300.00003 * 16 14 12 38 38 H 1.08991 * 109.47444 * 59.99823 * 16 14 12 39 39 H 0.97003 * 120.00158 * 179.97438 * 21 20 18 40 40 H 1.08996 * 113.77201 * 90.33634 * 26 9 7 41 41 H 1.09002 * 113.76575 * 318.93589 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6897 -0.0057 5 8 3.5890 -0.6461 -0.0035 6 6 2.3137 -1.0992 0.0033 7 6 1.8826 -2.5017 0.0084 8 8 0.6965 -2.7736 0.0140 9 7 2.8003 -3.4887 0.0069 10 6 2.7336 -4.9631 0.0102 11 6 4.1305 -4.9233 -0.6355 12 7 4.1029 -4.9051 -2.1003 13 6 3.3943 -3.8348 -2.8063 14 6 4.7294 -5.8731 -2.7980 15 8 5.3157 -6.7594 -2.2135 16 6 4.7016 -5.8540 -4.3047 17 16 5.6240 -7.2744 -4.9432 18 6 5.4326 -7.0102 -6.6747 19 1 4.8716 -6.1595 -7.0324 20 6 6.0028 -7.8956 -7.5790 21 7 6.6860 -8.9327 -7.1431 22 14 5.7992 -7.6159 -9.4147 23 1 6.3834 -6.3013 -9.7829 24 1 6.4979 -8.6936 -10.1600 25 1 4.3551 -7.6302 -9.7605 26 6 4.2756 -3.5294 0.0014 27 1 -0.3633 0.0036 1.0276 28 1 -0.3632 0.8882 -0.5169 29 1 -0.3633 -0.8917 -0.5108 30 1 4.4044 1.3443 -0.0117 31 1 1.9598 -5.3692 -0.6412 32 1 2.7234 -5.4001 1.0087 33 1 4.8214 -5.6640 -0.2327 34 1 4.0782 -3.0063 -2.9906 35 1 3.0180 -4.2135 -3.7565 36 1 2.5595 -3.4883 -2.1970 37 1 3.6689 -5.9071 -4.6497 38 1 5.1580 -4.9322 -4.6649 39 1 7.0842 -9.5517 -7.7750 40 1 4.7184 -3.5453 0.9972 41 1 4.7329 -2.7909 -0.6572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506258626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:09 Heat of formation + Delta-G solvation = -18.187748 kcal Electronic energy + Delta-G solvation = -26705.352729 eV Core-core repulsion = 22714.574040 eV Total energy + Delta-G solvation = -3990.778689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.48945 -42.01351 -40.35295 -38.95230 -36.39628 -35.72630 -34.58449 -32.81771 -31.64230 -30.25974 -28.66239 -27.76230 -27.61108 -27.31059 -24.82746 -23.30941 -22.46979 -21.18060 -20.08310 -19.58264 -18.87076 -18.38183 -17.95265 -17.76794 -17.20914 -16.94449 -16.87117 -16.81484 -16.47492 -15.77332 -15.61306 -14.82347 -14.73389 -14.58460 -14.50714 -14.31676 -14.16903 -14.03445 -13.61318 -13.46930 -13.33781 -13.27446 -13.16181 -12.88354 -12.87326 -12.62753 -12.39609 -12.17428 -11.95273 -11.75022 -11.23447 -11.13037 -11.01783 -10.28508 -10.24068 -9.89642 -9.72423 -8.66861 -8.34747 -6.12582 -0.28457 1.22274 1.25872 1.36853 1.43504 1.43839 1.47925 1.53932 1.75079 1.88984 1.99052 2.27126 2.99420 3.10443 3.21825 3.22670 3.34416 3.63266 3.66135 3.74926 4.03905 4.19579 4.21442 4.25590 4.37698 4.41159 4.44750 4.46607 4.49892 4.59349 4.64206 4.69633 4.75598 4.78163 4.80280 4.98892 5.26617 5.41569 5.44727 6.11563 6.19574 6.30591 6.47488 6.76348 7.04794 7.06784 8.74050 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.002375 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.001274 B =11786.002483 C =12423.203854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.072 3.928 3 N -0.526 5.526 4 C 0.229 3.771 5 O -0.188 6.188 6 C -0.131 4.131 7 C 0.627 3.373 8 O -0.547 6.547 9 N -0.636 5.636 10 C 0.102 3.898 11 C 0.103 3.897 12 N -0.592 5.592 13 C 0.077 3.923 14 C 0.541 3.459 15 O -0.552 6.552 16 C -0.127 4.127 17 S -0.144 6.144 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.996 3.004 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.264 1.264 26 C 0.108 3.892 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.306 0.694 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.271 0.729 40 H 0.134 0.866 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 20.943 17.052 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 N -0.255 5.255 4 C 0.005 3.995 5 O -0.074 6.074 6 C -0.186 4.186 7 C 0.417 3.583 8 O -0.428 6.428 9 N -0.370 5.370 10 C -0.020 4.020 11 C -0.002 4.002 12 N -0.325 5.325 13 C -0.065 4.065 14 C 0.329 3.671 15 O -0.429 6.429 16 C -0.278 4.278 17 S 0.083 5.917 18 C -0.695 4.695 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.818 3.182 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.014 4.014 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.321 0.679 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.180 20.080 17.873 27.824 hybrid contribution -0.439 0.321 -1.711 1.795 sum -7.619 20.401 16.162 27.119 Atomic orbital electron populations 1.20392 0.85023 1.04297 1.04072 1.22340 0.99049 0.86770 0.97014 1.70411 1.02592 1.31414 1.21065 1.29560 0.98153 0.79119 0.92702 1.84536 1.28478 1.25171 1.69213 1.22537 0.82314 0.95324 1.18462 1.16011 0.84399 0.81331 0.76587 1.90868 1.16490 1.82279 1.53139 1.50091 1.08454 1.07077 1.71350 1.23875 0.97143 0.78150 1.02848 1.22603 0.98228 0.99579 0.79799 1.47442 1.53101 1.26371 1.05616 1.21945 0.97030 0.89887 0.97674 1.20034 0.77420 0.80812 0.88821 1.90689 1.44068 1.36716 1.71405 1.23391 1.05338 1.04429 0.94607 1.85501 1.69277 1.32158 1.04750 1.23153 1.40105 1.14962 0.91326 0.90076 1.26089 0.93842 0.93944 1.05104 1.70162 1.33413 1.13892 1.37129 0.85039 0.78937 0.78377 0.75879 1.18643 1.20368 1.18829 1.23877 0.78606 0.95672 1.03227 0.89388 0.89378 0.89890 0.67890 0.90442 0.85347 0.85305 0.90984 0.90529 0.90897 0.87776 0.87433 0.91955 0.84825 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.87 71.24 0.70 -0.69 16 2 C 0.07 1.39 7.16 41.83 0.30 1.69 16 3 N -0.53 -8.89 11.26 -303.13 -3.41 -12.31 16 4 C 0.23 2.19 13.21 130.42 1.72 3.92 16 5 O -0.19 -2.57 9.36 -7.09 -0.07 -2.63 16 6 C -0.13 -2.50 7.11 24.05 0.17 -2.33 16 7 C 0.63 13.54 7.06 86.46 0.61 14.15 16 8 O -0.55 -14.97 15.52 -4.32 -0.07 -15.04 16 9 N -0.64 -11.01 2.22 -841.87 -1.87 -12.88 16 10 C 0.10 1.70 8.25 86.48 0.71 2.42 16 11 C 0.10 1.90 4.52 46.75 0.21 2.11 16 12 N -0.59 -14.47 3.09 -828.31 -2.56 -17.04 16 13 C 0.08 1.55 9.24 127.77 1.18 2.73 16 14 C 0.54 18.89 7.69 87.66 0.67 19.56 16 15 O -0.55 -23.50 15.34 -3.04 -0.05 -23.55 16 16 C -0.13 -4.89 4.71 71.24 0.34 -4.56 16 17 S -0.14 -7.81 20.57 -56.49 -1.16 -8.97 16 18 C -0.55 -30.80 9.50 67.96 0.65 -30.16 16 19 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 20 C 0.02 0.86 5.49 84.86 0.47 1.32 16 21 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 22 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 C 0.11 1.38 7.21 86.48 0.62 2.00 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.64 6.47 -2.39 -0.02 1.62 16 30 H 0.31 -0.82 8.06 -2.91 -0.02 -0.85 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.13 2.55 7.22 -2.39 -0.02 2.53 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.59 6.44 -2.39 -0.02 1.57 16 36 H 0.07 1.47 5.33 -2.38 -0.01 1.46 16 37 H 0.10 3.73 7.40 -2.39 -0.02 3.71 16 38 H 0.11 3.77 8.11 -2.40 -0.02 3.75 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.21 7.30 -2.39 -0.02 1.19 16 Total: -1.00 -82.21 363.77 2.55 -79.66 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.07 Total: 10.30 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 8.36 Total: 12.18 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -7.56 Total: -97.05 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.18 Total: -41.22 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.16 Total: -8.97 kcal Total: -82.21 2.55 -79.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506258626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.475 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds