Wall clock time and date at job start Tue Mar 31 2020 22:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34258 * 126.52633 * 2 1 4 4 C 1.34046 * 108.23131 * 180.02562 * 3 2 1 5 5 N 1.29945 * 109.23867 * 359.72239 * 4 3 2 6 6 C 1.36065 * 108.47735 * 0.44233 * 5 4 3 7 7 C 1.47419 * 126.44945 * 179.82183 * 6 5 4 8 8 O 1.21611 * 119.99913 * 179.68427 * 7 6 5 9 9 N 1.34772 * 119.99689 * 359.69565 * 7 6 5 10 10 C 1.46504 * 119.99740 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.91599 * 37.44825 * 10 9 7 12 12 C 1.55158 * 111.00258 * 161.34484 * 10 9 7 13 13 C 1.54340 * 103.02056 * 153.38004 * 12 10 9 14 14 N 1.47021 * 107.26360 * 338.14333 * 13 12 10 15 15 C 1.34778 * 125.64597 * 178.85217 * 14 13 12 16 16 O 1.21278 * 119.99748 * 179.68858 * 15 14 13 17 17 C 1.50697 * 120.00209 * 359.68671 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00123 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00074 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99873 * 23 21 19 27 27 C 1.47426 * 108.70439 * 358.58153 * 14 13 12 28 28 H 1.08997 * 109.47573 * 269.97661 * 1 2 3 29 29 H 1.09005 * 109.47403 * 29.97802 * 1 2 3 30 30 H 1.08998 * 109.47039 * 149.97588 * 1 2 3 31 31 H 1.07998 * 125.38119 * 179.97438 * 4 3 2 32 32 H 0.97004 * 120.00308 * 359.97438 * 9 7 6 33 33 H 1.09002 * 110.72451 * 271.93722 * 12 10 9 34 34 H 1.09006 * 110.72264 * 35.21303 * 12 10 9 35 35 H 1.08996 * 109.98931 * 218.66496 * 13 12 10 36 36 H 1.09003 * 109.77829 * 97.49290 * 13 12 10 37 37 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 38 38 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 39 39 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.36487 * 143.19330 * 27 14 13 41 41 H 1.08996 * 110.36717 * 265.51803 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 7 3.6002 -0.6412 0.0050 6 6 2.3170 -1.0936 -0.0006 7 6 1.8853 -2.5032 -0.0008 8 8 0.7002 -2.7762 -0.0004 9 7 2.8040 -3.4892 -0.0014 10 6 2.3750 -4.8901 -0.0011 11 1 1.4878 -5.0255 -0.6196 12 6 3.5242 -5.8237 -0.4651 13 6 3.1843 -7.1623 0.2238 14 7 2.3145 -6.8553 1.3687 15 6 1.7810 -7.7591 2.2143 16 8 1.0791 -7.3903 3.1321 17 6 2.0565 -9.2278 2.0195 18 16 1.2060 -10.1769 3.3048 19 6 1.6864 -11.8094 2.8480 20 1 2.3252 -11.9645 1.9911 21 6 1.2490 -12.8957 3.5932 22 7 0.4708 -12.7066 4.6379 23 14 1.7647 -14.6259 3.1135 24 1 3.0301 -14.9756 3.8076 25 1 0.7025 -15.5860 3.5073 26 1 1.9714 -14.6914 1.6444 27 6 2.1279 -5.3948 1.4425 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 4.4489 1.2978 -0.0011 32 1 3.7493 -3.2715 -0.0019 33 1 3.5182 -5.9330 -1.5496 34 1 4.4881 -5.4501 -0.1194 35 1 4.0977 -7.6451 0.5710 36 1 2.6605 -7.8143 -0.4752 37 1 3.1296 -9.4079 2.0844 38 1 1.6946 -9.5384 1.0394 39 1 0.1649 -13.4658 5.1584 40 1 1.1121 -5.1577 1.7585 41 1 2.8520 -4.9540 2.1277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524124549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:44 Heat of formation + Delta-G solvation = -42.511960 kcal Electronic energy + Delta-G solvation = -25794.905792 eV Core-core repulsion = 21803.072326 eV Total energy + Delta-G solvation = -3991.833466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.91888 -40.36989 -39.27446 -37.27287 -35.35727 -34.43634 -32.84380 -32.41487 -31.08775 -29.68761 -28.42976 -27.38463 -25.48416 -24.55229 -23.40863 -22.48787 -21.26750 -20.89447 -19.38771 -18.65703 -17.70124 -17.37958 -17.04165 -16.66351 -16.38151 -15.67823 -15.34126 -15.04156 -14.80607 -14.77296 -14.45253 -14.19974 -13.88807 -13.67535 -13.60049 -13.49371 -13.01300 -12.88040 -12.64259 -12.53575 -12.00942 -11.94339 -11.81372 -11.69426 -11.32027 -11.12640 -11.05150 -11.00641 -10.75856 -10.48615 -9.81509 -9.62475 -9.41579 -9.27468 -9.05279 -8.51090 -8.21618 -6.48724 -6.20150 -3.90784 0.63569 1.56097 2.06564 2.55578 2.90027 3.01510 3.08745 3.23326 3.27560 3.31625 3.54136 3.64847 4.10330 4.15420 4.21541 4.35392 4.42523 4.66351 4.71587 4.93261 4.96532 5.04229 5.07275 5.09861 5.14878 5.37025 5.41696 5.49696 5.55774 5.58246 5.61302 5.68462 5.75398 5.83639 5.94356 6.06542 6.15111 6.40669 6.85696 7.18010 7.60691 7.65284 7.78678 8.36587 8.56400 9.24930 10.87276 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.001858 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.860567 B =15067.311145 C =15511.983649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.050 3.950 3 O -0.200 6.200 4 C 0.176 3.824 5 N -0.464 5.464 6 C -0.082 4.082 7 C 0.605 3.395 8 O -0.526 6.526 9 N -0.703 5.703 10 C 0.133 3.867 11 H 0.108 0.892 12 C -0.136 4.136 13 C 0.105 3.895 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.099 3.901 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.256 0.744 32 H 0.411 0.589 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.085 0.915 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.528 27.689 -14.863 32.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 O -0.086 6.086 4 C -0.053 4.053 5 N -0.193 5.193 6 C -0.202 4.202 7 C 0.391 3.609 8 O -0.402 6.402 9 N -0.354 5.354 10 C 0.027 3.973 11 H 0.126 0.874 12 C -0.174 4.174 13 C -0.019 4.019 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.386 6.386 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.026 4.026 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.271 0.729 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.024 27.505 -13.280 31.341 hybrid contribution 1.464 -0.888 -1.336 2.172 sum 8.488 26.617 -14.615 31.530 Atomic orbital electron populations 1.20659 0.82374 1.05582 1.05055 1.23832 0.95319 0.83291 0.98224 1.84398 1.18605 1.36276 1.69322 1.28016 0.85302 0.91156 1.00815 1.70717 1.21637 1.10285 1.16662 1.21410 0.88952 0.95433 1.14407 1.16699 0.85489 0.82590 0.76106 1.90837 1.16139 1.83143 1.50093 1.45608 1.10278 1.05009 1.74524 1.22155 0.98785 0.79350 0.96986 0.87380 1.22928 0.98398 0.94462 1.01642 1.21966 0.94961 0.96777 0.88224 1.48401 1.51385 1.06132 1.30490 1.20051 0.78585 0.87052 0.80555 1.90718 1.36744 1.80593 1.30550 1.23503 1.05531 0.93671 1.06949 1.85431 1.64273 0.99911 1.33795 1.22858 1.36642 0.91613 1.17178 0.90913 1.25002 0.94685 0.99394 0.94556 1.70025 1.32067 1.31667 1.16486 0.86162 0.78330 0.82143 0.78819 1.20290 1.20753 1.19689 1.22476 1.03170 0.80909 0.96012 0.88653 0.89960 0.86781 0.72859 0.75298 0.89035 0.89779 0.90701 0.90736 0.89253 0.89189 0.92188 0.89661 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.88 36.00 0.36 -0.16 16 2 C 0.05 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -1.39 10.73 6.52 0.07 -1.32 16 4 C 0.18 0.94 13.19 51.96 0.69 1.63 16 5 N -0.46 -3.85 11.06 -11.48 -0.13 -3.98 16 6 C -0.08 -0.80 6.99 -83.02 -0.58 -1.38 16 7 C 0.61 6.67 7.81 -12.52 -0.10 6.57 16 8 O -0.53 -7.06 14.55 5.27 0.08 -6.99 16 9 N -0.70 -6.41 5.23 -52.80 -0.28 -6.69 16 10 C 0.13 1.31 3.32 -65.78 -0.22 1.09 16 11 H 0.11 1.18 7.73 -51.93 -0.40 0.78 16 12 C -0.14 -1.00 6.57 -24.89 -0.16 -1.16 16 13 C 0.10 1.07 6.49 -3.06 -0.02 1.05 16 14 N -0.63 -9.31 3.33 -170.51 -0.57 -9.88 16 15 C 0.55 10.96 7.87 -10.99 -0.09 10.87 16 16 O -0.51 -12.38 16.12 5.56 0.09 -12.29 16 17 C -0.15 -3.04 5.35 36.00 0.19 -2.84 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.10 1.31 6.60 -2.53 -0.02 1.30 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.88 6.48 -51.93 -0.34 0.54 16 31 H 0.26 0.02 8.06 -52.49 -0.42 -0.40 16 32 H 0.41 3.06 8.24 -40.82 -0.34 2.72 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.50 8.00 -51.93 -0.42 0.09 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -38.19 369.97 -6.93 -45.12 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.26 Total: -0.59 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.01 Total: 4.08 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.24 Total: -46.18 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.24 Total: -20.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.19 -6.93 -45.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524124549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.606 kcal (2) G-P(sol) polarization free energy of solvation -38.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds