Wall clock time and date at job start Tue Mar 31 2020 22:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34258 * 126.52633 * 2 1 4 4 C 1.34046 * 108.23131 * 180.02562 * 3 2 1 5 5 N 1.29945 * 109.23867 * 359.72239 * 4 3 2 6 6 C 1.36065 * 108.47735 * 0.44233 * 5 4 3 7 7 C 1.47419 * 126.44945 * 179.82183 * 6 5 4 8 8 O 1.21611 * 119.99913 * 179.68427 * 7 6 5 9 9 N 1.34772 * 119.99689 * 359.69565 * 7 6 5 10 10 C 1.46504 * 119.99740 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.91599 * 37.44825 * 10 9 7 12 12 C 1.55158 * 111.00258 * 161.34484 * 10 9 7 13 13 C 1.54340 * 103.02056 * 153.38004 * 12 10 9 14 14 N 1.47021 * 107.26360 * 338.14333 * 13 12 10 15 15 C 1.34778 * 125.64597 * 178.85217 * 14 13 12 16 16 O 1.21278 * 119.99748 * 179.68858 * 15 14 13 17 17 C 1.50697 * 120.00209 * 359.68671 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00123 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00074 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99873 * 23 21 19 27 27 C 1.47426 * 108.70439 * 358.58153 * 14 13 12 28 28 H 1.08997 * 109.47573 * 269.97661 * 1 2 3 29 29 H 1.09005 * 109.47403 * 29.97802 * 1 2 3 30 30 H 1.08998 * 109.47039 * 149.97588 * 1 2 3 31 31 H 1.07998 * 125.38119 * 179.97438 * 4 3 2 32 32 H 0.97004 * 120.00308 * 359.97438 * 9 7 6 33 33 H 1.09002 * 110.72451 * 271.93722 * 12 10 9 34 34 H 1.09006 * 110.72264 * 35.21303 * 12 10 9 35 35 H 1.08996 * 109.98931 * 218.66496 * 13 12 10 36 36 H 1.09003 * 109.77829 * 97.49290 * 13 12 10 37 37 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 38 38 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 39 39 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.36487 * 143.19330 * 27 14 13 41 41 H 1.08996 * 110.36717 * 265.51803 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 7 3.6002 -0.6412 0.0050 6 6 2.3170 -1.0936 -0.0006 7 6 1.8853 -2.5032 -0.0008 8 8 0.7002 -2.7762 -0.0004 9 7 2.8040 -3.4892 -0.0014 10 6 2.3750 -4.8901 -0.0011 11 1 1.4878 -5.0255 -0.6196 12 6 3.5242 -5.8237 -0.4651 13 6 3.1843 -7.1623 0.2238 14 7 2.3145 -6.8553 1.3687 15 6 1.7810 -7.7591 2.2143 16 8 1.0791 -7.3903 3.1321 17 6 2.0565 -9.2278 2.0195 18 16 1.2060 -10.1769 3.3048 19 6 1.6864 -11.8094 2.8480 20 1 2.3252 -11.9645 1.9911 21 6 1.2490 -12.8957 3.5932 22 7 0.4708 -12.7066 4.6379 23 14 1.7647 -14.6259 3.1135 24 1 3.0301 -14.9756 3.8076 25 1 0.7025 -15.5860 3.5073 26 1 1.9714 -14.6914 1.6444 27 6 2.1279 -5.3948 1.4425 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 4.4489 1.2978 -0.0011 32 1 3.7493 -3.2715 -0.0019 33 1 3.5182 -5.9330 -1.5496 34 1 4.4881 -5.4501 -0.1194 35 1 4.0977 -7.6451 0.5710 36 1 2.6605 -7.8143 -0.4752 37 1 3.1296 -9.4079 2.0844 38 1 1.6946 -9.5384 1.0394 39 1 0.1649 -13.4658 5.1584 40 1 1.1121 -5.1577 1.7585 41 1 2.8520 -4.9540 2.1277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524124549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:43 Heat of formation + Delta-G solvation = -73.713779 kcal Electronic energy + Delta-G solvation = -25796.258805 eV Core-core repulsion = 21803.072326 eV Total energy + Delta-G solvation = -3993.186478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.45848 -41.40047 -40.43743 -38.51205 -35.97708 -35.38871 -34.58673 -33.40182 -32.29047 -30.89083 -29.44073 -28.17259 -27.63746 -25.36804 -24.32943 -23.09863 -22.04702 -21.66226 -20.76425 -19.71798 -19.22160 -18.17088 -17.95964 -17.85784 -17.12456 -16.89110 -16.80687 -16.50917 -16.02625 -15.72660 -15.62393 -15.33996 -15.11303 -14.59073 -14.49869 -14.34644 -14.16988 -13.97712 -13.86596 -13.44711 -13.38113 -13.16233 -12.88752 -12.83220 -12.63307 -12.60838 -12.43584 -11.95315 -11.85056 -11.74694 -11.32341 -11.14208 -11.06340 -10.41665 -10.28688 -9.93884 -9.75063 -8.69211 -8.34606 -6.13840 0.00409 1.01507 1.20038 1.41895 1.43270 1.50467 1.53861 1.57505 1.84811 2.14577 2.21928 2.27256 2.99521 3.06336 3.18543 3.38229 3.50292 3.61020 3.76565 3.87168 3.94275 4.13653 4.20992 4.23295 4.28887 4.39305 4.43483 4.55099 4.58300 4.70787 4.75147 4.85763 4.90209 5.02043 5.10192 5.17058 5.18515 5.37743 5.41746 6.19819 6.21379 6.31290 6.54074 7.00411 7.05345 7.06356 8.74776 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.001858 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.860567 B =15067.311145 C =15511.983649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.045 3.955 3 O -0.200 6.200 4 C 0.196 3.804 5 N -0.490 5.490 6 C -0.107 4.107 7 C 0.600 3.400 8 O -0.560 6.560 9 N -0.690 5.690 10 C 0.143 3.857 11 H 0.097 0.903 12 C -0.117 4.117 13 C 0.091 3.909 14 N -0.616 5.616 15 C 0.545 3.455 16 O -0.569 6.569 17 C -0.117 4.117 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.256 1.256 27 C 0.096 3.904 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.305 0.695 32 H 0.422 0.578 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.050 0.950 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.487 28.380 -17.531 35.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.012 4.012 3 O -0.087 6.087 4 C -0.032 4.032 5 N -0.218 5.218 6 C -0.226 4.226 7 C 0.387 3.613 8 O -0.439 6.439 9 N -0.342 5.342 10 C 0.036 3.964 11 H 0.115 0.885 12 C -0.154 4.154 13 C -0.031 4.031 14 N -0.351 5.351 15 C 0.333 3.667 16 O -0.448 6.448 17 C -0.268 4.268 18 S 0.071 5.929 19 C -0.691 4.691 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.180 1.180 27 C -0.028 4.028 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.319 0.681 32 H 0.260 0.740 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.051 28.221 -16.008 33.966 hybrid contribution 0.613 -0.893 -0.554 1.217 sum 10.664 27.327 -16.561 33.687 Atomic orbital electron populations 1.20662 0.81664 1.05902 1.05305 1.24069 0.96033 0.83394 0.97742 1.84430 1.19182 1.35721 1.69345 1.29192 0.85749 0.90896 0.97366 1.70692 1.20855 1.11785 1.18476 1.21312 0.90131 0.94919 1.16197 1.17012 0.85240 0.83585 0.75492 1.90819 1.17531 1.83811 1.51691 1.45492 1.10605 1.04339 1.73748 1.21975 0.99975 0.80247 0.94156 0.88460 1.22942 0.97903 0.91478 1.03124 1.22423 0.94794 0.99042 0.86831 1.48308 1.50372 1.06138 1.30291 1.19905 0.78595 0.87382 0.80788 1.90695 1.39554 1.81286 1.33247 1.23284 1.05654 0.93137 1.04690 1.85671 1.66639 1.02305 1.38289 1.23191 1.36784 0.91562 1.17612 0.89648 1.26183 0.94390 1.04517 0.94260 1.70200 1.33528 1.33200 1.17945 0.84913 0.78038 0.75534 0.79234 1.19235 1.20392 1.17993 1.22565 1.01347 0.80110 0.98778 0.88387 0.87612 0.88425 0.68059 0.74015 0.86010 0.87483 0.88978 0.89527 0.87009 0.87182 0.92008 0.93160 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.88 71.23 0.70 -0.30 16 2 C 0.04 0.72 7.44 25.19 0.19 0.91 16 3 O -0.20 -2.39 10.73 0.41 0.00 -2.38 16 4 C 0.20 1.56 13.19 130.52 1.72 3.28 16 5 N -0.49 -7.25 11.06 -305.15 -3.37 -10.63 16 6 C -0.11 -2.02 6.99 40.41 0.28 -1.74 16 7 C 0.60 13.32 7.81 86.66 0.68 14.00 16 8 O -0.56 -15.77 14.55 -4.07 -0.06 -15.83 16 9 N -0.69 -11.88 5.23 -439.22 -2.30 -14.18 16 10 C 0.14 2.64 3.32 46.38 0.15 2.79 16 11 H 0.10 2.08 7.73 -2.39 -0.02 2.06 16 12 C -0.12 -1.28 6.57 31.79 0.21 -1.07 16 13 C 0.09 1.59 6.49 86.73 0.56 2.15 16 14 N -0.62 -17.92 3.33 -811.78 -2.70 -20.62 16 15 C 0.54 22.11 7.87 87.66 0.69 22.80 16 16 O -0.57 -29.00 16.12 -3.02 -0.05 -29.05 16 17 C -0.12 -4.81 5.35 71.23 0.38 -4.43 16 18 S -0.16 -8.93 20.57 -56.49 -1.16 -10.09 16 19 C -0.54 -31.32 9.50 67.96 0.65 -30.67 16 20 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 21 C 0.01 0.64 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.80 13.22 21.65 0.29 -56.51 16 23 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 C 0.10 2.60 6.60 86.85 0.57 3.17 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 1.60 6.48 -2.39 -0.02 1.59 16 31 H 0.30 -1.30 8.06 -2.91 -0.02 -1.32 16 32 H 0.42 5.44 8.24 -92.71 -0.76 4.68 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.77 8.00 -2.38 -0.02 0.75 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 38 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 39 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.05 1.71 8.04 -2.39 -0.02 1.69 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -89.00 369.97 0.24 -88.75 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.31 Total: 12.75 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 7.25 Total: 11.97 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -8.08 Total: -101.93 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.10 Total: -47.26 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -89.00 0.24 -88.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524124549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.039 kcal (2) G-P(sol) polarization free energy of solvation -88.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds