Wall clock time and date at job start Tue Mar 31 2020 22:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34248 * 126.52767 * 2 1 4 4 C 1.34048 * 108.23140 * 180.02562 * 3 2 1 5 5 N 1.29936 * 109.23813 * 359.72050 * 4 3 2 6 6 C 1.36068 * 108.47840 * 0.44153 * 5 4 3 7 7 C 1.47425 * 126.44853 * 179.82537 * 6 5 4 8 8 O 1.21612 * 119.99809 * 179.69123 * 7 6 5 9 9 N 1.34778 * 120.00037 * 359.69226 * 7 6 5 10 10 C 1.46494 * 119.99999 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.91449 * 328.90061 * 10 9 7 12 12 C 1.55153 * 111.00503 * 204.99816 * 10 9 7 13 13 C 1.54323 * 103.10236 * 206.33489 * 12 10 9 14 14 N 1.47486 * 107.03754 * 22.24109 * 13 12 10 15 15 C 1.34778 * 125.59413 * 181.00840 * 14 13 12 16 16 O 1.21283 * 119.99795 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00167 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.47226 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99818 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00194 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99849 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00062 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47171 * 89.99724 * 23 21 19 25 25 H 1.48503 * 109.46900 * 210.00060 * 23 21 19 26 26 H 1.48501 * 109.47025 * 329.99781 * 23 21 19 27 27 C 1.47428 * 108.75727 * 1.02624 * 14 13 12 28 28 H 1.08994 * 109.47321 * 269.98390 * 1 2 3 29 29 H 1.08996 * 109.46850 * 29.97973 * 1 2 3 30 30 H 1.08995 * 109.47186 * 149.97676 * 1 2 3 31 31 H 1.08000 * 125.38381 * 179.97438 * 4 3 2 32 32 H 0.97002 * 120.00010 * 359.97438 * 9 7 6 33 33 H 1.09002 * 110.72030 * 324.78756 * 12 10 9 34 34 H 1.09003 * 110.72184 * 87.88407 * 12 10 9 35 35 H 1.09000 * 109.88693 * 141.69901 * 13 12 10 36 36 H 1.09005 * 109.88012 * 262.86516 * 13 12 10 37 37 H 1.09008 * 109.46920 * 300.00630 * 17 15 14 38 38 H 1.09000 * 109.46934 * 60.00192 * 17 15 14 39 39 H 0.97000 * 120.00250 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.36462 * 217.05803 * 27 14 13 41 41 H 1.08996 * 110.46287 * 94.77884 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 -0.0006 5 7 3.6002 -0.6412 0.0051 6 6 2.3170 -1.0937 -0.0005 7 6 1.8853 -2.5033 -0.0006 8 8 0.7002 -2.7763 -0.0003 9 7 2.8040 -3.4894 -0.0011 10 6 2.3750 -4.8902 -0.0019 11 1 1.4274 -5.0072 0.5240 12 6 3.4674 -5.8067 0.6098 13 6 3.1964 -7.1697 -0.0613 14 7 2.4552 -6.8982 -1.3072 15 6 2.0119 -7.8293 -2.1749 16 8 1.4110 -7.4911 -3.1727 17 6 2.2627 -9.2906 -1.9055 18 16 1.5516 -10.2815 -3.2428 19 6 1.9795 -11.8978 -2.6868 20 1 2.5235 -12.0245 -1.7625 21 6 1.6165 -13.0082 -3.4363 22 7 1.9357 -14.2157 -3.0207 23 14 0.6751 -12.7891 -5.0348 24 1 1.6347 -12.6528 -6.1598 25 1 -0.1923 -13.9724 -5.2646 26 1 -0.1657 -11.5680 -4.9506 27 6 2.2800 -5.4411 -1.4466 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 4.4490 1.2976 -0.0011 32 1 3.7492 -3.2717 -0.0018 33 1 4.4629 -5.4427 0.3555 34 1 3.3492 -5.8789 1.6909 35 1 4.1403 -7.6651 -0.2888 36 1 2.5967 -7.7955 0.5997 37 1 3.3364 -9.4710 -1.8513 38 1 1.7992 -9.5704 -0.9595 39 1 1.6818 -14.9918 -3.5443 40 1 1.3034 -5.2157 -1.8750 41 1 3.0716 -5.0196 -2.0661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524124551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:47 Heat of formation + Delta-G solvation = -42.472178 kcal Electronic energy + Delta-G solvation = -25817.304735 eV Core-core repulsion = 21825.472994 eV Total energy + Delta-G solvation = -3991.831741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.94978 -40.41382 -39.35337 -37.35927 -35.38864 -34.48249 -32.87725 -32.42927 -31.17157 -29.79004 -28.50313 -27.44099 -25.60956 -24.60278 -23.46368 -22.52340 -21.30921 -20.96046 -19.47640 -18.72797 -17.71663 -17.40574 -17.09106 -16.74998 -16.42998 -15.72080 -15.37717 -15.09935 -15.00994 -14.79674 -14.49185 -14.27783 -13.90174 -13.70763 -13.58612 -13.48482 -13.09110 -12.91768 -12.83956 -12.67767 -12.11981 -12.00572 -11.89137 -11.77696 -11.35334 -11.25394 -11.15576 -10.99469 -10.62262 -10.51210 -9.85598 -9.67189 -9.51132 -9.33115 -8.99211 -8.60714 -8.48618 -6.91051 -6.27931 -3.99659 0.60274 1.52966 2.03492 2.47104 2.80924 2.86062 2.95682 3.23195 3.34586 3.51934 3.52536 3.61653 4.07822 4.12298 4.28401 4.34770 4.38466 4.62751 4.68815 4.72298 4.89840 4.92939 4.99766 5.03735 5.11159 5.19461 5.34092 5.39293 5.49038 5.52749 5.53930 5.61928 5.70648 5.73614 5.83376 6.00385 6.03058 6.30842 6.82439 7.14330 7.53544 7.74292 7.95086 8.42252 8.42999 9.18305 10.81186 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.001924 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.897788 B =14550.770614 C =15018.174707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.050 3.950 3 O -0.200 6.200 4 C 0.176 3.824 5 N -0.464 5.464 6 C -0.083 4.083 7 C 0.606 3.394 8 O -0.527 6.527 9 N -0.702 5.702 10 C 0.132 3.868 11 H 0.112 0.888 12 C -0.137 4.137 13 C 0.103 3.897 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.515 6.515 17 C -0.117 4.117 18 S -0.142 6.142 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.099 3.901 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.256 0.744 32 H 0.411 0.589 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.084 0.916 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 31.701 11.698 34.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 O -0.086 6.086 4 C -0.052 4.052 5 N -0.193 5.193 6 C -0.202 4.202 7 C 0.392 3.608 8 O -0.404 6.404 9 N -0.353 5.353 10 C 0.026 3.974 11 H 0.130 0.870 12 C -0.175 4.175 13 C -0.020 4.020 14 N -0.363 5.363 15 C 0.336 3.664 16 O -0.389 6.389 17 C -0.267 4.267 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.025 4.025 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.272 0.728 32 H 0.247 0.753 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.540 31.354 10.134 33.140 hybrid contribution 0.699 0.016 0.545 0.886 sum 4.239 31.370 10.679 33.408 Atomic orbital electron populations 1.20657 0.82385 1.05729 1.04892 1.23827 0.95316 0.83301 0.98226 1.84398 1.18612 1.36270 1.69307 1.28022 0.85297 0.91150 1.00755 1.70717 1.21612 1.10294 1.16667 1.21402 0.88971 0.95408 1.14443 1.16700 0.85469 0.82609 0.76016 1.90831 1.16159 1.83151 1.50211 1.45592 1.10312 1.05000 1.74445 1.22167 0.99619 0.79346 0.96283 0.87036 1.22929 0.99063 0.94276 1.01241 1.22093 0.97239 0.96906 0.85801 1.48457 1.58086 1.05900 1.23816 1.20012 0.77772 0.86774 0.81820 1.90716 1.39856 1.81689 1.26674 1.23251 1.05371 0.92914 1.05211 1.84816 1.74705 1.02173 1.29918 1.22304 1.42838 0.89070 1.12591 0.89361 1.24711 0.94690 0.94118 0.97798 1.69936 1.45083 0.97737 1.38915 0.86736 0.81424 0.80009 0.83705 1.19214 1.19936 1.15898 1.22476 1.03097 0.80679 0.96282 0.88771 0.89909 0.86737 0.72838 0.75266 0.89759 0.89018 0.90476 0.90508 0.88520 0.88426 0.91949 0.89765 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 9.88 36.01 0.36 -0.13 16 2 C 0.05 0.40 7.44 -35.08 -0.26 0.14 16 3 O -0.20 -1.33 10.73 6.54 0.07 -1.26 16 4 C 0.18 0.91 13.19 51.96 0.69 1.59 16 5 N -0.46 -3.73 11.06 -11.48 -0.13 -3.86 16 6 C -0.08 -0.77 6.99 -83.02 -0.58 -1.35 16 7 C 0.61 6.43 7.81 -12.52 -0.10 6.33 16 8 O -0.53 -6.83 14.44 5.27 0.08 -6.75 16 9 N -0.70 -6.14 5.19 -52.80 -0.27 -6.42 16 10 C 0.13 1.23 3.42 -65.78 -0.23 1.01 16 11 H 0.11 1.18 7.54 -51.93 -0.39 0.79 16 12 C -0.14 -0.96 6.58 -24.90 -0.16 -1.12 16 13 C 0.10 1.00 6.52 -2.81 -0.02 0.99 16 14 N -0.62 -8.78 3.34 -170.14 -0.57 -9.34 16 15 C 0.55 10.34 7.87 -10.99 -0.09 10.25 16 16 O -0.52 -11.76 16.12 5.55 0.09 -11.67 16 17 C -0.12 -2.32 5.35 36.00 0.19 -2.13 16 18 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 19 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 23 Si 0.86 21.99 27.74 -169.99 -4.72 17.27 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 27 C 0.10 1.24 6.60 -2.52 -0.02 1.22 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.87 6.48 -51.93 -0.34 0.53 16 31 H 0.26 -0.03 8.06 -52.49 -0.42 -0.45 16 32 H 0.41 2.95 8.30 -40.82 -0.34 2.61 16 33 H 0.08 0.48 8.00 -51.93 -0.42 0.06 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -37.65 367.18 -6.42 -44.07 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.28 Total: -0.80 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 0.00 Total: 4.75 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.19 Total: -45.47 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.24 Total: -19.68 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.65 -6.42 -44.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524124551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal (2) G-P(sol) polarization free energy of solvation -37.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds