Wall clock time and date at job start Tue Mar 31 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34248 * 126.52767 * 2 1 4 4 C 1.34048 * 108.23140 * 180.02562 * 3 2 1 5 5 N 1.29936 * 109.23813 * 359.72050 * 4 3 2 6 6 C 1.36068 * 108.47840 * 0.44153 * 5 4 3 7 7 C 1.47425 * 126.44853 * 179.82537 * 6 5 4 8 8 O 1.21612 * 119.99809 * 179.69123 * 7 6 5 9 9 N 1.34778 * 120.00037 * 359.69226 * 7 6 5 10 10 C 1.46494 * 119.99999 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.91449 * 328.90061 * 10 9 7 12 12 C 1.55153 * 111.00503 * 204.99816 * 10 9 7 13 13 C 1.54323 * 103.10236 * 206.33489 * 12 10 9 14 14 N 1.47486 * 107.03754 * 22.24109 * 13 12 10 15 15 C 1.34778 * 125.59413 * 181.00840 * 14 13 12 16 16 O 1.21283 * 119.99795 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00167 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.47226 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99818 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00194 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99849 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00062 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47171 * 89.99724 * 23 21 19 25 25 H 1.48503 * 109.46900 * 210.00060 * 23 21 19 26 26 H 1.48501 * 109.47025 * 329.99781 * 23 21 19 27 27 C 1.47428 * 108.75727 * 1.02624 * 14 13 12 28 28 H 1.08994 * 109.47321 * 269.98390 * 1 2 3 29 29 H 1.08996 * 109.46850 * 29.97973 * 1 2 3 30 30 H 1.08995 * 109.47186 * 149.97676 * 1 2 3 31 31 H 1.08000 * 125.38381 * 179.97438 * 4 3 2 32 32 H 0.97002 * 120.00010 * 359.97438 * 9 7 6 33 33 H 1.09002 * 110.72030 * 324.78756 * 12 10 9 34 34 H 1.09003 * 110.72184 * 87.88407 * 12 10 9 35 35 H 1.09000 * 109.88693 * 141.69901 * 13 12 10 36 36 H 1.09005 * 109.88012 * 262.86516 * 13 12 10 37 37 H 1.09008 * 109.46920 * 300.00630 * 17 15 14 38 38 H 1.09000 * 109.46934 * 60.00192 * 17 15 14 39 39 H 0.97000 * 120.00250 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.36462 * 217.05803 * 27 14 13 41 41 H 1.08996 * 110.46287 * 94.77884 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 -0.0006 5 7 3.6002 -0.6412 0.0051 6 6 2.3170 -1.0937 -0.0005 7 6 1.8853 -2.5033 -0.0006 8 8 0.7002 -2.7763 -0.0003 9 7 2.8040 -3.4894 -0.0011 10 6 2.3750 -4.8902 -0.0019 11 1 1.4274 -5.0072 0.5240 12 6 3.4674 -5.8067 0.6098 13 6 3.1964 -7.1697 -0.0613 14 7 2.4552 -6.8982 -1.3072 15 6 2.0119 -7.8293 -2.1749 16 8 1.4110 -7.4911 -3.1727 17 6 2.2627 -9.2906 -1.9055 18 16 1.5516 -10.2815 -3.2428 19 6 1.9795 -11.8978 -2.6868 20 1 2.5235 -12.0245 -1.7625 21 6 1.6165 -13.0082 -3.4363 22 7 1.9357 -14.2157 -3.0207 23 14 0.6751 -12.7891 -5.0348 24 1 1.6347 -12.6528 -6.1598 25 1 -0.1923 -13.9724 -5.2646 26 1 -0.1657 -11.5680 -4.9506 27 6 2.2800 -5.4411 -1.4466 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 4.4490 1.2976 -0.0011 32 1 3.7492 -3.2717 -0.0018 33 1 4.4629 -5.4427 0.3555 34 1 3.3492 -5.8789 1.6909 35 1 4.1403 -7.6651 -0.2888 36 1 2.5967 -7.7955 0.5997 37 1 3.3364 -9.4710 -1.8513 38 1 1.7992 -9.5704 -0.9595 39 1 1.6818 -14.9918 -3.5443 40 1 1.3034 -5.2157 -1.8750 41 1 3.0716 -5.0196 -2.0661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524124551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:46 Heat of formation + Delta-G solvation = -73.081185 kcal Electronic energy + Delta-G solvation = -25818.632041 eV Core-core repulsion = 21825.472994 eV Total energy + Delta-G solvation = -3993.159047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.46015 -41.39916 -40.45619 -38.52348 -35.97670 -35.38574 -34.67624 -33.40160 -32.32383 -30.93585 -29.45906 -28.17722 -27.82338 -25.37286 -24.33615 -23.10077 -22.05483 -21.67530 -20.82041 -19.74076 -19.25599 -18.21612 -17.94455 -17.87087 -17.16049 -17.13227 -16.75910 -16.50998 -15.95582 -15.75451 -15.65016 -15.31978 -15.10735 -14.90660 -14.54367 -14.40435 -14.19254 -13.96720 -13.87296 -13.49998 -13.39425 -13.35113 -13.02542 -12.84423 -12.71520 -12.65967 -12.43823 -11.95783 -11.88178 -11.83489 -11.31822 -11.17660 -11.10967 -10.54741 -10.41218 -9.94285 -9.77357 -9.02129 -8.51986 -6.23290 0.00477 0.92823 1.01764 1.30471 1.39796 1.46559 1.49764 1.56496 1.83207 2.13878 2.19600 2.24799 2.67133 2.86094 3.06261 3.28660 3.47686 3.60953 3.73556 3.80121 3.93511 4.13460 4.16026 4.23219 4.25768 4.39265 4.39664 4.55897 4.57036 4.70644 4.74837 4.85881 4.90259 5.01210 5.09864 5.15472 5.17261 5.36776 5.70629 6.11108 6.21056 6.26760 6.53839 6.93186 6.98603 7.00800 8.60135 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.001924 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.897788 B =14550.770614 C =15018.174707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.045 3.955 3 O -0.200 6.200 4 C 0.196 3.804 5 N -0.490 5.490 6 C -0.108 4.108 7 C 0.601 3.399 8 O -0.559 6.559 9 N -0.691 5.691 10 C 0.141 3.859 11 H 0.099 0.901 12 C -0.119 4.119 13 C 0.091 3.909 14 N -0.615 5.615 15 C 0.547 3.453 16 O -0.566 6.566 17 C -0.100 4.100 18 S -0.180 6.180 19 C -0.526 4.526 20 H 0.065 0.935 21 C 0.047 3.953 22 N -0.914 5.914 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.240 1.240 27 C 0.098 3.902 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.304 0.696 32 H 0.421 0.579 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.053 0.947 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.262 33.953 12.821 36.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.012 4.012 3 O -0.087 6.087 4 C -0.032 4.032 5 N -0.218 5.218 6 C -0.226 4.226 7 C 0.388 3.612 8 O -0.438 6.438 9 N -0.342 5.342 10 C 0.035 3.965 11 H 0.117 0.883 12 C -0.157 4.157 13 C -0.031 4.031 14 N -0.350 5.350 15 C 0.335 3.665 16 O -0.445 6.445 17 C -0.250 4.250 18 S 0.046 5.954 19 C -0.674 4.674 20 H 0.084 0.916 21 C -0.159 4.159 22 N -0.552 5.552 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.164 1.164 27 C -0.027 4.027 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.319 0.681 32 H 0.259 0.741 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.077 33.613 11.314 35.828 hybrid contribution 0.353 -0.513 0.321 0.700 sum 5.430 33.101 11.635 35.504 Atomic orbital electron populations 1.20664 0.81606 1.05713 1.05519 1.24080 0.96055 0.83381 0.97696 1.84430 1.19177 1.35747 1.69338 1.29179 0.85751 0.90897 0.97401 1.70692 1.20902 1.11781 1.18460 1.21317 0.90102 0.94949 1.16238 1.16993 0.85227 0.83548 0.75434 1.90813 1.17474 1.83788 1.51764 1.45482 1.10610 1.04374 1.73709 1.21985 1.00451 0.80100 0.93999 0.88254 1.22933 0.99003 0.91455 1.02270 1.22514 0.97506 0.99081 0.84020 1.48379 1.56662 1.05898 1.24049 1.19768 0.77846 0.86915 0.82003 1.90694 1.42495 1.82269 1.29016 1.23188 1.06047 0.92699 1.03094 1.84795 1.75795 1.01475 1.33292 1.22420 1.42268 0.90906 1.11781 0.91646 1.25527 0.95579 0.93949 1.00828 1.70006 1.46274 0.98538 1.40407 0.85895 0.80430 0.80191 0.80033 1.18681 1.18222 1.16362 1.22568 1.01674 0.79827 0.98612 0.87772 0.87891 0.88697 0.68120 0.74081 0.87514 0.86378 0.88889 0.89508 0.86647 0.86793 0.91340 0.92842 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.88 71.24 0.70 -0.22 16 2 C 0.05 0.68 7.44 25.19 0.19 0.87 16 3 O -0.20 -2.26 10.73 0.49 0.01 -2.25 16 4 C 0.20 1.46 13.19 130.52 1.72 3.18 16 5 N -0.49 -6.96 11.06 -305.15 -3.37 -10.34 16 6 C -0.11 -1.94 6.99 40.41 0.28 -1.66 16 7 C 0.60 12.69 7.81 86.66 0.68 13.37 16 8 O -0.56 -14.99 14.44 -4.07 -0.06 -15.04 16 9 N -0.69 -11.26 5.19 -439.21 -2.28 -13.54 16 10 C 0.14 2.45 3.42 46.39 0.16 2.61 16 11 H 0.10 2.05 7.54 -2.39 -0.02 2.03 16 12 C -0.12 -1.25 6.58 31.78 0.21 -1.04 16 13 C 0.09 1.50 6.52 86.64 0.57 2.07 16 14 N -0.61 -16.60 3.34 -810.59 -2.71 -19.30 16 15 C 0.55 20.49 7.87 87.66 0.69 21.18 16 16 O -0.57 -26.39 16.12 -3.04 -0.05 -26.44 16 17 C -0.10 -3.88 5.35 71.24 0.38 -3.50 16 18 S -0.18 -9.34 18.55 -56.49 -1.05 -10.39 16 19 C -0.53 -30.81 10.04 67.95 0.68 -30.13 16 20 H 0.07 4.00 8.03 -2.91 -0.02 3.98 16 21 C 0.05 2.76 5.50 84.86 0.47 3.23 16 22 N -0.91 -55.72 13.97 21.65 0.30 -55.42 16 23 Si 0.91 45.59 27.74 68.60 1.90 47.49 16 24 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.24 -12.07 6.74 99.48 0.67 -11.40 16 27 C 0.10 2.40 6.60 86.86 0.57 2.98 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.53 6.48 -2.39 -0.02 1.51 16 31 H 0.30 -1.40 8.06 -2.91 -0.02 -1.43 16 32 H 0.42 5.20 8.30 -92.71 -0.77 4.43 16 33 H 0.11 0.73 8.00 -2.39 -0.02 0.71 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.32 16 37 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 38 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 39 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.05 1.66 8.04 -2.39 -0.02 1.64 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -84.77 367.18 0.26 -84.51 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.27 Total: 7.78 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 7.30 Total: 12.94 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -8.06 Total: -98.60 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.10 Total: -43.74 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.05 Total: -10.39 kcal Total: -84.77 0.26 -84.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524124551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.427 kcal (2) G-P(sol) polarization free energy of solvation -84.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds