Wall clock time and date at job start Tue Mar 31 2020 22:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29928 * 125.38103 * 2 1 4 4 C 1.36062 * 108.47927 * 180.12028 * 3 2 1 5 5 C 1.47425 * 126.44903 * 179.86170 * 4 3 2 6 6 O 1.21613 * 120.00006 * 179.68772 * 5 4 3 7 7 N 1.34777 * 119.99743 * 359.68465 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 H 1.09002 * 112.85201 * 24.08188 * 8 7 5 10 10 C 1.53784 * 113.61491 * 155.28109 * 8 7 5 11 11 C 1.53783 * 87.08338 * 139.98310 * 10 8 7 12 12 H 1.09004 * 113.61283 * 220.02107 * 11 10 8 13 13 N 1.46493 * 113.61843 * 89.11341 * 11 10 8 14 14 C 1.34775 * 120.00228 * 154.99836 * 13 11 10 15 15 O 1.21283 * 119.99574 * 0.02562 * 14 13 11 16 16 C 1.50696 * 120.00225 * 180.02562 * 14 13 11 17 17 S 1.81006 * 109.47051 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99920 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99655 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99993 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00126 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46597 * 60.00148 * 22 20 18 24 24 H 1.48491 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47152 * 300.00234 * 22 20 18 26 26 C 1.53780 * 87.07825 * 334.56565 * 11 10 8 27 27 C 1.36093 * 107.10320 * 359.59796 * 4 3 2 28 28 O 1.34057 * 125.37599 * 179.67032 * 2 1 3 29 29 H 1.09001 * 109.46862 * 180.30648 * 1 2 3 30 30 H 1.08998 * 109.46856 * 300.30769 * 1 2 3 31 31 H 1.09000 * 109.47205 * 60.30752 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 33 33 H 1.09000 * 113.61044 * 254.52540 * 10 8 7 34 34 H 1.08999 * 113.61555 * 25.34324 * 10 8 7 35 35 H 0.97001 * 119.99834 * 335.00338 * 13 11 10 36 36 H 1.09002 * 109.47348 * 299.99865 * 16 14 13 37 37 H 1.09002 * 109.47458 * 60.00235 * 16 14 13 38 38 H 0.96993 * 120.00154 * 179.97438 * 21 20 18 39 39 H 1.08998 * 113.61772 * 270.88604 * 26 11 10 40 40 H 1.09001 * 113.61751 * 139.98662 * 26 11 10 41 41 H 1.07997 * 126.52576 * 180.27762 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2594 1.0593 0.0000 4 6 3.5612 0.6638 -0.0027 5 6 4.7440 1.5438 -0.0065 6 8 5.8605 1.0617 -0.0030 7 7 4.5879 2.8824 -0.0140 8 6 5.7632 3.7569 -0.0117 9 1 6.6525 3.2719 -0.4142 10 6 5.4968 5.1486 -0.6094 11 6 6.3778 5.7145 0.5169 12 1 5.9994 6.6441 0.9420 13 7 7.7999 5.7826 0.1718 14 6 8.6014 6.6726 0.7895 15 8 8.1455 7.4169 1.6316 16 6 10.0642 6.7431 0.4340 17 16 10.8652 8.0272 1.4269 18 6 12.5158 7.8945 0.8246 19 1 12.7558 7.1673 0.0629 20 6 13.5074 8.7244 1.3289 21 7 13.2149 9.6103 2.2575 22 14 15.2574 8.5833 0.6908 23 1 15.2746 8.8503 -0.7699 24 1 16.1189 9.5732 1.3857 25 1 15.7698 7.2138 0.9498 26 6 6.0008 4.4661 1.3320 27 6 3.5660 -0.6971 0.0048 28 8 2.2832 -1.0930 0.0063 29 1 -0.3633 -1.0277 0.0055 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5090 -0.8927 32 1 3.6973 3.2669 -0.0166 33 1 5.9199 5.2846 -1.6046 34 1 4.4536 5.4582 -0.5470 35 1 8.1645 5.1870 -0.5015 36 1 10.5341 5.7806 0.6366 37 1 10.1699 6.9835 -0.6239 38 1 13.9079 10.1901 2.6102 39 1 5.0956 4.5897 1.9265 40 1 6.8307 4.0511 1.9040 41 1 4.4361 -1.3368 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524877607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:20 Heat of formation + Delta-G solvation = -30.763596 kcal Electronic energy + Delta-G solvation = -25116.426413 eV Core-core repulsion = 21125.102394 eV Total energy + Delta-G solvation = -3991.324019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.94610 -40.60156 -39.33799 -37.88787 -35.45165 -34.21955 -32.82726 -32.41720 -32.31069 -29.08049 -28.41558 -26.00184 -25.74565 -25.41463 -23.51432 -22.03301 -21.10142 -20.75205 -19.71982 -18.53323 -17.84028 -17.44128 -16.97611 -16.91466 -16.11028 -15.96556 -15.22092 -15.15232 -14.83957 -14.78863 -14.50389 -14.26032 -14.15993 -13.76203 -13.70335 -13.16778 -13.14702 -12.96234 -12.79070 -12.67811 -12.24061 -11.90823 -11.76892 -11.37585 -11.07170 -11.03027 -11.01865 -10.80969 -10.75636 -10.50973 -9.80952 -9.57502 -9.42413 -9.32077 -9.04702 -8.89014 -8.22906 -6.48505 -6.19940 -3.90612 0.61552 1.47689 2.04668 2.71070 2.87886 3.00457 3.05588 3.25217 3.28760 3.31944 3.33854 3.68902 4.13996 4.22148 4.26116 4.30085 4.34637 4.68796 4.70243 4.75931 4.77248 4.91258 5.09890 5.12818 5.15200 5.18155 5.34878 5.38844 5.51968 5.56793 5.63005 5.66579 5.84768 5.90336 5.94319 6.14490 6.16426 6.66102 6.86875 7.19016 7.61008 7.68711 7.78073 8.36748 8.59837 9.25300 10.87440 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031699 B = 0.001629 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.092552 B =17184.097730 C =17768.453725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.198 3.802 3 N -0.464 5.464 4 C -0.073 4.073 5 C 0.603 3.397 6 O -0.534 6.534 7 N -0.700 5.700 8 C 0.120 3.880 9 H 0.118 0.882 10 C -0.152 4.152 11 C 0.129 3.871 12 H 0.110 0.890 13 N -0.722 5.722 14 C 0.536 3.464 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.164 4.164 27 C 0.014 3.986 28 O -0.197 6.197 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.410 0.590 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.328 -20.938 -7.717 35.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.195 5.195 4 C -0.193 4.193 5 C 0.388 3.612 6 O -0.410 6.410 7 N -0.350 5.350 8 C 0.015 3.985 9 H 0.136 0.864 10 C -0.191 4.191 11 C 0.022 3.978 12 H 0.128 0.872 13 N -0.376 5.376 14 C 0.322 3.678 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.204 4.204 27 C -0.060 4.060 28 O -0.083 6.083 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.246 0.754 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.234 0.766 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -27.446 -19.256 -6.183 34.093 hybrid contribution 1.731 -1.825 -1.680 3.025 sum -25.715 -21.081 -7.863 34.169 Atomic orbital electron populations 1.20337 0.80732 1.05108 1.05455 1.26374 0.96725 0.78248 0.99773 1.70727 1.00665 1.30037 1.18046 1.21804 0.92129 0.93110 1.12236 1.16785 0.86149 0.82111 0.76162 1.90855 1.24267 1.75382 1.50546 1.45782 1.10467 1.05146 1.73620 1.22772 0.89361 0.88704 0.97650 0.86438 1.23746 1.01361 0.94338 0.99624 1.21521 0.81592 0.99186 0.95478 0.87167 1.45727 1.08014 1.40058 1.43800 1.20335 0.87951 0.78952 0.80547 1.90701 1.75878 1.40843 1.31459 1.23542 0.94068 1.06959 1.05915 1.85385 1.05191 1.41810 1.50889 1.22837 0.94032 1.24444 1.27171 0.90948 1.24984 0.99319 0.94476 0.94735 1.70005 1.34105 1.20032 1.26170 0.86226 0.82220 0.78108 0.78960 1.19939 1.20812 1.19939 1.23967 1.02843 0.96576 0.97046 1.25329 0.84846 0.95729 1.00057 1.84417 1.16755 1.37940 1.69152 0.89076 0.88140 0.88167 0.75444 0.89862 0.88226 0.76646 0.89095 0.89115 0.92134 0.88851 0.90177 0.75200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.11 10.51 36.01 0.38 0.27 16 2 C 0.20 1.27 8.30 -13.08 -0.11 1.17 16 3 N -0.46 -3.97 11.06 -7.65 -0.08 -4.06 16 4 C -0.07 -0.69 6.99 -83.02 -0.58 -1.27 16 5 C 0.60 6.59 7.81 -12.52 -0.10 6.49 16 6 O -0.53 -7.36 16.49 5.27 0.09 -7.27 16 7 N -0.70 -6.29 5.35 -54.09 -0.29 -6.58 16 8 C 0.12 1.10 4.11 -67.12 -0.28 0.83 16 9 H 0.12 1.22 7.47 -51.93 -0.39 0.83 16 10 C -0.15 -1.20 7.58 -25.92 -0.20 -1.39 16 11 C 0.13 1.45 4.32 -67.12 -0.29 1.16 16 12 H 0.11 1.41 7.47 -51.93 -0.39 1.02 16 13 N -0.72 -9.49 5.26 -53.02 -0.28 -9.77 16 14 C 0.54 9.92 7.85 -10.99 -0.09 9.83 16 15 O -0.52 -11.60 15.46 5.55 0.09 -11.51 16 16 C -0.15 -3.12 6.16 36.00 0.22 -2.89 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 C -0.16 -1.71 7.68 -25.92 -0.20 -1.91 16 27 C 0.01 0.11 11.95 29.96 0.36 0.46 16 28 O -0.20 -1.37 10.73 6.50 0.07 -1.30 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.41 3.05 8.46 -40.82 -0.35 2.70 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.40 4.19 8.70 -40.82 -0.36 3.83 16 36 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 37 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.23 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -37.92 376.79 -7.16 -45.08 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.25 Total: 2.92 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.68 Total: -0.32 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.08 Total: -45.97 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.24 Total: -20.08 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.92 -7.16 -45.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524877607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.314 kcal (2) G-P(sol) polarization free energy of solvation -37.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds