Wall clock time and date at job start Tue Mar 31 2020 22:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29928 * 125.38103 * 2 1 4 4 C 1.36062 * 108.47927 * 180.12028 * 3 2 1 5 5 C 1.47425 * 126.44903 * 179.86170 * 4 3 2 6 6 O 1.21613 * 120.00006 * 179.68772 * 5 4 3 7 7 N 1.34777 * 119.99743 * 359.68465 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 H 1.09002 * 112.85201 * 24.08188 * 8 7 5 10 10 C 1.53784 * 113.61491 * 155.28109 * 8 7 5 11 11 C 1.53783 * 87.08338 * 139.98310 * 10 8 7 12 12 H 1.09004 * 113.61283 * 220.02107 * 11 10 8 13 13 N 1.46493 * 113.61843 * 89.11341 * 11 10 8 14 14 C 1.34775 * 120.00228 * 154.99836 * 13 11 10 15 15 O 1.21283 * 119.99574 * 0.02562 * 14 13 11 16 16 C 1.50696 * 120.00225 * 180.02562 * 14 13 11 17 17 S 1.81006 * 109.47051 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99920 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99655 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99993 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00126 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46597 * 60.00148 * 22 20 18 24 24 H 1.48491 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47152 * 300.00234 * 22 20 18 26 26 C 1.53780 * 87.07825 * 334.56565 * 11 10 8 27 27 C 1.36093 * 107.10320 * 359.59796 * 4 3 2 28 28 O 1.34057 * 125.37599 * 179.67032 * 2 1 3 29 29 H 1.09001 * 109.46862 * 180.30648 * 1 2 3 30 30 H 1.08998 * 109.46856 * 300.30769 * 1 2 3 31 31 H 1.09000 * 109.47205 * 60.30752 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 33 33 H 1.09000 * 113.61044 * 254.52540 * 10 8 7 34 34 H 1.08999 * 113.61555 * 25.34324 * 10 8 7 35 35 H 0.97001 * 119.99834 * 335.00338 * 13 11 10 36 36 H 1.09002 * 109.47348 * 299.99865 * 16 14 13 37 37 H 1.09002 * 109.47458 * 60.00235 * 16 14 13 38 38 H 0.96993 * 120.00154 * 179.97438 * 21 20 18 39 39 H 1.08998 * 113.61772 * 270.88604 * 26 11 10 40 40 H 1.09001 * 113.61751 * 139.98662 * 26 11 10 41 41 H 1.07997 * 126.52576 * 180.27762 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2594 1.0593 0.0000 4 6 3.5612 0.6638 -0.0027 5 6 4.7440 1.5438 -0.0065 6 8 5.8605 1.0617 -0.0030 7 7 4.5879 2.8824 -0.0140 8 6 5.7632 3.7569 -0.0117 9 1 6.6525 3.2719 -0.4142 10 6 5.4968 5.1486 -0.6094 11 6 6.3778 5.7145 0.5169 12 1 5.9994 6.6441 0.9420 13 7 7.7999 5.7826 0.1718 14 6 8.6014 6.6726 0.7895 15 8 8.1455 7.4169 1.6316 16 6 10.0642 6.7431 0.4340 17 16 10.8652 8.0272 1.4269 18 6 12.5158 7.8945 0.8246 19 1 12.7558 7.1673 0.0629 20 6 13.5074 8.7244 1.3289 21 7 13.2149 9.6103 2.2575 22 14 15.2574 8.5833 0.6908 23 1 15.2746 8.8503 -0.7699 24 1 16.1189 9.5732 1.3857 25 1 15.7698 7.2138 0.9498 26 6 6.0008 4.4661 1.3320 27 6 3.5660 -0.6971 0.0048 28 8 2.2832 -1.0930 0.0063 29 1 -0.3633 -1.0277 0.0055 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5090 -0.8927 32 1 3.6973 3.2669 -0.0166 33 1 5.9199 5.2846 -1.6046 34 1 4.4536 5.4582 -0.5470 35 1 8.1645 5.1870 -0.5015 36 1 10.5341 5.7806 0.6366 37 1 10.1699 6.9835 -0.6239 38 1 13.9079 10.1901 2.6102 39 1 5.0956 4.5897 1.9265 40 1 6.8307 4.0511 1.9040 41 1 4.4361 -1.3368 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524877607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:19 Heat of formation + Delta-G solvation = -62.246427 kcal Electronic energy + Delta-G solvation = -25117.791611 eV Core-core repulsion = 21125.102394 eV Total energy + Delta-G solvation = -3992.689217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.48045 -41.55124 -40.45474 -39.03524 -36.04098 -35.23107 -34.58336 -33.62432 -33.04927 -30.59730 -28.83328 -27.68178 -26.78860 -26.45782 -24.29186 -22.56114 -22.25580 -21.61079 -20.69302 -19.85028 -19.17907 -18.14958 -17.97117 -17.52768 -17.32087 -17.07505 -16.87557 -16.42546 -16.07730 -15.91370 -15.74504 -15.05562 -14.85392 -14.79256 -14.62415 -14.36230 -14.05149 -13.90241 -13.54478 -13.38267 -13.29992 -13.18345 -13.15075 -12.86637 -12.60769 -12.36708 -11.97198 -11.94561 -11.75433 -11.67858 -11.36276 -11.12836 -10.97741 -10.29132 -10.28406 -10.10665 -9.93882 -8.66559 -8.34403 -6.12622 0.01926 0.90720 1.26323 1.44011 1.46336 1.56306 1.57052 1.57696 2.01825 2.13800 2.22703 2.28376 2.85707 2.99626 3.31344 3.34982 3.51961 3.69597 3.76807 3.83635 3.94008 4.00848 4.30511 4.39567 4.50546 4.50986 4.53947 4.68053 4.68774 4.74354 4.74778 4.84365 4.85921 4.96577 4.98221 5.23707 5.33111 5.41760 5.58443 6.19742 6.24160 6.47069 6.54387 7.01681 7.06768 7.22364 8.74571 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031699 B = 0.001629 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.092552 B =17184.097730 C =17768.453725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.202 3.798 3 N -0.486 5.486 4 C -0.101 4.101 5 C 0.600 3.400 6 O -0.570 6.570 7 N -0.689 5.689 8 C 0.123 3.877 9 H 0.108 0.892 10 C -0.126 4.126 11 C 0.116 3.884 12 H 0.095 0.905 13 N -0.698 5.698 14 C 0.538 3.462 15 O -0.562 6.562 16 C -0.132 4.132 17 S -0.149 6.149 18 C -0.549 4.549 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.162 4.162 27 C 0.021 3.979 28 O -0.198 6.198 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.419 0.581 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.416 0.584 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.543 -22.724 -9.655 37.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.008 4.008 3 N -0.217 5.217 4 C -0.220 4.220 5 C 0.386 3.614 6 O -0.450 6.450 7 N -0.339 5.339 8 C 0.018 3.982 9 H 0.126 0.874 10 C -0.164 4.164 11 C 0.010 3.990 12 H 0.114 0.886 13 N -0.351 5.351 14 C 0.325 3.675 15 O -0.440 6.440 16 C -0.283 4.283 17 S 0.078 5.922 18 C -0.697 4.697 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.202 4.202 27 C -0.053 4.053 28 O -0.084 6.084 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.256 0.744 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.253 0.747 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -28.714 -21.067 -8.161 36.536 hybrid contribution 1.925 -1.375 -1.082 2.601 sum -26.789 -22.442 -9.242 36.149 Atomic orbital electron populations 1.20626 0.77652 1.06770 1.06545 1.27321 0.98140 0.77575 0.97716 1.70703 1.00418 1.31030 1.19505 1.21721 0.92177 0.93677 1.14379 1.17032 0.86174 0.82662 0.75490 1.90827 1.25673 1.76043 1.52471 1.45694 1.10816 1.04653 1.72751 1.22665 0.89336 0.89322 0.96835 0.87397 1.23660 1.01944 0.92013 0.98828 1.21704 0.80507 0.98967 0.97810 0.88650 1.45463 1.08569 1.38368 1.42723 1.20042 0.87634 0.79461 0.80410 1.90689 1.76420 1.43128 1.33759 1.23388 0.94768 1.04713 1.05401 1.85544 1.06797 1.45925 1.53922 1.23189 0.94295 1.24820 1.27405 0.89940 1.26115 1.04372 0.93796 0.94737 1.70172 1.35749 1.21086 1.27702 0.85012 0.75808 0.78513 0.78708 1.18599 1.20316 1.18802 1.23960 1.02571 0.96100 0.97563 1.25730 0.85584 0.95464 0.98501 1.84454 1.16618 1.38214 1.69123 0.87161 0.87018 0.86850 0.74372 0.88441 0.85712 0.74730 0.87407 0.86968 0.91973 0.87640 0.92383 0.73331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.07 10.51 71.24 0.75 0.68 16 2 C 0.20 2.24 8.30 88.39 0.73 2.97 16 3 N -0.49 -7.70 11.06 -293.03 -3.24 -10.94 16 4 C -0.10 -1.82 6.99 40.41 0.28 -1.54 16 5 C 0.60 12.81 7.81 86.66 0.68 13.49 16 6 O -0.57 -15.73 16.49 -4.07 -0.07 -15.79 16 7 N -0.69 -11.50 5.35 -443.28 -2.37 -13.88 16 8 C 0.12 2.09 4.11 45.52 0.19 2.28 16 9 H 0.11 2.12 7.47 -2.39 -0.02 2.10 16 10 C -0.13 -1.65 7.58 31.12 0.24 -1.42 16 11 C 0.12 2.47 4.32 45.52 0.20 2.67 16 12 H 0.10 2.40 7.47 -2.38 -0.02 2.39 16 13 N -0.70 -17.54 5.26 -440.05 -2.32 -19.85 16 14 C 0.54 19.90 7.85 87.66 0.69 20.59 16 15 O -0.56 -26.00 15.46 -3.04 -0.05 -26.05 16 16 C -0.13 -5.26 6.16 71.23 0.44 -4.82 16 17 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 18 C -0.55 -31.71 9.50 67.95 0.65 -31.06 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.84 5.49 84.86 0.47 1.31 16 21 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 22 Si 1.00 43.99 29.55 68.60 2.03 46.01 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 26 C -0.16 -3.26 7.68 31.12 0.24 -3.02 16 27 C 0.02 0.30 11.95 67.32 0.80 1.10 16 28 O -0.20 -2.45 10.73 0.33 0.00 -2.45 16 29 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.42 5.49 8.46 -92.71 -0.78 4.70 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.42 7.87 8.70 -92.71 -0.81 7.06 16 36 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.25 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -85.61 376.79 -1.04 -86.65 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.50 Total: 18.67 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 6.34 Total: 3.22 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -7.64 Total: -100.75 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.11 Total: -44.29 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -85.61 -1.04 -86.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524877607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.405 kcal (2) G-P(sol) polarization free energy of solvation -85.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds