Wall clock time and date at job start Tue Mar 31 2020 22:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35319 * 126.66403 * 2 1 4 4 C 1.42271 * 103.92170 * 180.14892 * 3 2 1 5 5 C 1.48332 * 126.94243 * 179.89046 * 4 3 2 6 6 O 1.21497 * 119.99483 * 359.71153 * 5 4 3 7 7 N 1.34775 * 120.00398 * 179.71622 * 5 4 3 8 8 C 1.46497 * 120.00055 * 180.02562 * 7 5 4 9 9 H 1.08997 * 112.91037 * 26.87862 * 8 7 5 10 10 C 1.53779 * 113.61382 * 158.13268 * 8 7 5 11 11 C 1.53781 * 87.08361 * 89.11482 * 10 8 7 12 12 H 1.08999 * 113.61717 * 140.06343 * 11 10 8 13 13 N 1.46497 * 113.61231 * 270.88435 * 11 10 8 14 14 C 1.34779 * 119.99974 * 274.82419 * 13 11 10 15 15 O 1.21276 * 120.00118 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00098 * 179.97438 * 14 13 11 17 17 S 1.80998 * 109.47259 * 180.02562 * 16 14 13 18 18 C 1.76187 * 100.00166 * 180.02562 * 17 16 14 19 19 H 1.08009 * 120.00363 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00261 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00134 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47261 * 89.99643 * 22 20 18 24 24 H 1.48499 * 109.47066 * 209.99779 * 22 20 18 25 25 H 1.48500 * 109.47318 * 329.99864 * 22 20 18 26 26 C 1.53781 * 113.61234 * 255.63021 * 8 7 5 27 27 N 1.30987 * 106.12355 * 359.62695 * 4 3 2 28 28 O 1.20905 * 111.43933 * 0.24388 * 27 4 3 29 29 H 1.08998 * 109.46987 * 180.27948 * 1 2 3 30 30 H 1.09000 * 109.47368 * 300.28769 * 1 2 3 31 31 H 1.09004 * 109.47042 * 60.28555 * 1 2 3 32 32 H 1.07996 * 128.04216 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99853 * 359.97438 * 7 5 4 34 34 H 1.08996 * 113.61688 * 334.56435 * 10 8 7 35 35 H 1.09000 * 113.61295 * 203.66192 * 10 8 7 36 36 H 0.96999 * 120.00274 * 94.82883 * 13 11 10 37 37 H 1.08998 * 109.46761 * 59.99955 * 16 14 13 38 38 H 1.09003 * 109.46995 * 300.00442 * 16 14 13 39 39 H 0.97002 * 119.99806 * 179.97438 * 21 20 18 40 40 H 1.09002 * 113.61690 * 156.33916 * 26 8 7 41 41 H 1.08997 * 113.61689 * 25.42786 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5355 -0.0036 5 6 4.9076 1.2842 -0.0074 6 8 4.9007 2.4991 -0.0129 7 7 6.0785 0.6168 -0.0047 8 6 7.3431 1.3564 -0.0079 9 1 7.2573 2.3455 0.4420 10 6 8.5350 0.5407 0.5201 11 6 8.7486 0.0641 -0.9263 12 1 9.7976 0.0085 -1.2173 13 7 8.0004 -1.1503 -1.2605 14 6 8.5194 -2.3612 -0.9761 15 8 9.6055 -2.4456 -0.4432 16 6 7.7495 -3.6105 -1.3194 17 16 8.7029 -5.0643 -0.8160 18 6 7.6011 -6.3428 -1.3214 19 1 6.6597 -6.0916 -1.7874 20 6 7.9424 -7.6731 -1.1198 21 7 9.0894 -7.9793 -0.5514 22 14 6.7738 -9.0286 -1.6550 23 1 7.0785 -9.4208 -3.0545 24 1 6.9392 -10.2050 -0.7640 25 1 5.3748 -8.5376 -1.5720 26 6 8.0512 1.3599 -1.3730 27 7 3.4761 -0.7657 0.0029 28 8 2.3073 -1.0749 0.0049 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3634 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 2.0301 2.1272 0.0004 33 1 6.0839 -0.3531 0.0000 34 1 8.2488 -0.2574 1.2051 35 1 9.3499 1.1556 0.9020 36 1 7.1316 -1.0829 -1.6865 37 1 7.5739 -3.6451 -2.3946 38 1 6.7938 -3.6038 -0.7952 39 1 9.3278 -8.9090 -0.4101 40 1 8.7339 2.1987 -1.5086 41 1 7.3744 1.2230 -2.2163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525269148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:04 Heat of formation + Delta-G solvation = 14.178290 kcal Electronic energy + Delta-G solvation = -26297.810304 eV Core-core repulsion = 22308.435112 eV Total energy + Delta-G solvation = -3989.375192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.43011 -40.87418 -39.31998 -37.89698 -34.52095 -34.19689 -33.51719 -32.59724 -32.42885 -29.14795 -28.26409 -26.13053 -25.93442 -25.47933 -23.84598 -22.99723 -21.02651 -20.20965 -19.81580 -18.17786 -17.89315 -17.85340 -17.29416 -16.48708 -16.25394 -15.89765 -15.64683 -15.08753 -14.80770 -14.75795 -14.52919 -14.18430 -14.07870 -13.89339 -13.74538 -13.24663 -12.91432 -12.85134 -12.76298 -12.58578 -12.13216 -11.99189 -11.81988 -11.17873 -11.06257 -11.02688 -10.83314 -10.78535 -10.66910 -10.59859 -9.82451 -9.81556 -9.51323 -9.43568 -9.07497 -8.95622 -8.25285 -6.50898 -6.22106 -3.92694 0.76004 1.27251 2.45071 2.63361 2.78291 2.97627 3.01332 3.22410 3.27291 3.31374 3.56700 3.66782 4.08908 4.14295 4.20041 4.32336 4.54180 4.57238 4.72518 4.84053 4.87353 4.91753 5.11092 5.12094 5.13306 5.30983 5.37105 5.42351 5.49570 5.54656 5.55207 5.65273 5.78875 5.81891 5.87468 6.10886 6.12855 6.60932 6.99918 7.58551 7.59782 7.60857 7.74786 8.35090 8.53827 9.23429 10.85345 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.003197 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.613676 B = 8757.037526 C =11596.137484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.031 4.031 3 C -0.186 4.186 4 C -0.031 4.031 5 C 0.604 3.396 6 O -0.522 6.522 7 N -0.697 5.697 8 C 0.117 3.883 9 H 0.108 0.892 10 C -0.156 4.156 11 C 0.125 3.875 12 H 0.097 0.903 13 N -0.728 5.728 14 C 0.534 3.466 15 O -0.510 6.510 16 C -0.155 4.155 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.153 4.153 27 N -0.326 5.326 28 O 0.129 5.871 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.410 0.590 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.109 0.891 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 21.642 -0.129 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.209 4.209 4 C -0.190 4.190 5 C 0.388 3.612 6 O -0.396 6.396 7 N -0.350 5.350 8 C 0.012 3.988 9 H 0.126 0.874 10 C -0.195 4.195 11 C 0.019 3.981 12 H 0.115 0.885 13 N -0.383 5.383 14 C 0.320 3.680 15 O -0.383 6.383 16 C -0.306 4.306 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.192 4.192 27 N -0.025 5.025 28 O 0.051 5.949 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.198 0.802 33 H 0.247 0.753 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.190 21.237 0.835 24.501 hybrid contribution -2.739 -0.512 -1.178 3.025 sum -14.929 20.725 -0.343 25.544 Atomic orbital electron populations 1.20402 0.83285 1.05185 1.04412 1.24560 0.96686 0.85363 1.02794 1.22398 0.89584 1.01566 1.07346 1.23453 0.96656 0.90315 1.08569 1.16866 0.81573 0.86328 0.76407 1.90797 1.86780 1.12418 1.49568 1.45701 1.04639 1.10972 1.73690 1.22023 0.82341 0.96899 0.97496 0.87433 1.23758 0.97329 1.00268 0.98124 1.21817 0.97125 0.84018 0.95135 0.88503 1.45919 1.22780 1.04962 1.64660 1.20351 0.86248 0.83814 0.77552 1.90708 1.20615 1.86494 1.40475 1.23558 1.03886 0.98254 1.04913 1.85375 1.25944 0.92177 1.79620 1.22870 1.06521 0.92529 1.46456 0.90905 1.24990 0.95769 0.98051 0.94744 1.70018 1.21037 1.19046 1.40221 0.86168 0.80458 0.80344 0.78550 1.20270 1.20740 1.19648 1.23741 0.99921 0.97820 0.97737 1.74255 0.97469 1.15343 1.15467 1.84833 1.11012 1.33417 1.65606 0.89415 0.88830 0.88822 0.80190 0.75320 0.90000 0.87419 0.76955 0.89189 0.89135 0.92183 0.87290 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.44 36.00 0.38 0.14 16 2 C -0.03 -0.23 7.47 -35.35 -0.26 -0.50 16 3 C -0.19 -1.63 10.92 -39.07 -0.43 -2.06 16 4 C -0.03 -0.35 7.19 -82.53 -0.59 -0.95 16 5 C 0.60 7.36 7.85 -12.11 -0.10 7.27 16 6 O -0.52 -7.36 16.59 5.37 0.09 -7.27 16 7 N -0.70 -7.62 4.96 -53.81 -0.27 -7.88 16 8 C 0.12 1.14 4.28 -67.12 -0.29 0.85 16 9 H 0.11 1.04 7.54 -51.93 -0.39 0.65 16 10 C -0.16 -1.60 7.61 -25.92 -0.20 -1.79 16 11 C 0.12 1.39 4.00 -67.12 -0.27 1.13 16 12 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 13 N -0.73 -9.54 4.34 -53.01 -0.23 -9.77 16 14 C 0.53 9.74 7.85 -10.98 -0.09 9.65 16 15 O -0.51 -11.25 15.80 5.56 0.09 -11.16 16 16 C -0.16 -3.13 6.16 36.01 0.22 -2.91 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.15 -1.31 7.57 -25.92 -0.20 -1.51 16 27 N -0.33 -3.90 11.84 33.29 0.39 -3.50 16 28 O 0.13 1.32 11.18 17.24 0.19 1.52 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.41 4.62 6.95 -40.82 -0.28 4.33 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.40 4.42 7.83 -40.82 -0.32 4.10 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -36.41 373.51 -7.41 -43.82 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.18 Total: 5.08 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.62 Total: -3.64 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.63 Total: -46.61 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.37 Total: -16.92 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.41 -7.41 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525269148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.001 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds