Wall clock time and date at job start Tue Mar 31 2020 22:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35319 * 126.66403 * 2 1 4 4 C 1.42271 * 103.92170 * 180.14892 * 3 2 1 5 5 C 1.48332 * 126.94243 * 179.89046 * 4 3 2 6 6 O 1.21497 * 119.99483 * 359.71153 * 5 4 3 7 7 N 1.34775 * 120.00398 * 179.71622 * 5 4 3 8 8 C 1.46497 * 120.00055 * 180.02562 * 7 5 4 9 9 H 1.08997 * 112.91037 * 26.87862 * 8 7 5 10 10 C 1.53779 * 113.61382 * 158.13268 * 8 7 5 11 11 C 1.53781 * 87.08361 * 89.11482 * 10 8 7 12 12 H 1.08999 * 113.61717 * 140.06343 * 11 10 8 13 13 N 1.46497 * 113.61231 * 270.88435 * 11 10 8 14 14 C 1.34779 * 119.99974 * 274.82419 * 13 11 10 15 15 O 1.21276 * 120.00118 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00098 * 179.97438 * 14 13 11 17 17 S 1.80998 * 109.47259 * 180.02562 * 16 14 13 18 18 C 1.76187 * 100.00166 * 180.02562 * 17 16 14 19 19 H 1.08009 * 120.00363 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00261 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00134 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47261 * 89.99643 * 22 20 18 24 24 H 1.48499 * 109.47066 * 209.99779 * 22 20 18 25 25 H 1.48500 * 109.47318 * 329.99864 * 22 20 18 26 26 C 1.53781 * 113.61234 * 255.63021 * 8 7 5 27 27 N 1.30987 * 106.12355 * 359.62695 * 4 3 2 28 28 O 1.20905 * 111.43933 * 0.24388 * 27 4 3 29 29 H 1.08998 * 109.46987 * 180.27948 * 1 2 3 30 30 H 1.09000 * 109.47368 * 300.28769 * 1 2 3 31 31 H 1.09004 * 109.47042 * 60.28555 * 1 2 3 32 32 H 1.07996 * 128.04216 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99853 * 359.97438 * 7 5 4 34 34 H 1.08996 * 113.61688 * 334.56435 * 10 8 7 35 35 H 1.09000 * 113.61295 * 203.66192 * 10 8 7 36 36 H 0.96999 * 120.00274 * 94.82883 * 13 11 10 37 37 H 1.08998 * 109.46761 * 59.99955 * 16 14 13 38 38 H 1.09003 * 109.46995 * 300.00442 * 16 14 13 39 39 H 0.97002 * 119.99806 * 179.97438 * 21 20 18 40 40 H 1.09002 * 113.61690 * 156.33916 * 26 8 7 41 41 H 1.08997 * 113.61689 * 25.42786 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5355 -0.0036 5 6 4.9076 1.2842 -0.0074 6 8 4.9007 2.4991 -0.0129 7 7 6.0785 0.6168 -0.0047 8 6 7.3431 1.3564 -0.0079 9 1 7.2573 2.3455 0.4420 10 6 8.5350 0.5407 0.5201 11 6 8.7486 0.0641 -0.9263 12 1 9.7976 0.0085 -1.2173 13 7 8.0004 -1.1503 -1.2605 14 6 8.5194 -2.3612 -0.9761 15 8 9.6055 -2.4456 -0.4432 16 6 7.7495 -3.6105 -1.3194 17 16 8.7029 -5.0643 -0.8160 18 6 7.6011 -6.3428 -1.3214 19 1 6.6597 -6.0916 -1.7874 20 6 7.9424 -7.6731 -1.1198 21 7 9.0894 -7.9793 -0.5514 22 14 6.7738 -9.0286 -1.6550 23 1 7.0785 -9.4208 -3.0545 24 1 6.9392 -10.2050 -0.7640 25 1 5.3748 -8.5376 -1.5720 26 6 8.0512 1.3599 -1.3730 27 7 3.4761 -0.7657 0.0029 28 8 2.3073 -1.0749 0.0049 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3634 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 2.0301 2.1272 0.0004 33 1 6.0839 -0.3531 0.0000 34 1 8.2488 -0.2574 1.2051 35 1 9.3499 1.1556 0.9020 36 1 7.1316 -1.0829 -1.6865 37 1 7.5739 -3.6451 -2.3946 38 1 6.7938 -3.6038 -0.7952 39 1 9.3278 -8.9090 -0.4101 40 1 8.7339 2.1987 -1.5086 41 1 7.3744 1.2230 -2.2163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525269148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:03 Heat of formation + Delta-G solvation = -12.343762 kcal Electronic energy + Delta-G solvation = -26298.960387 eV Core-core repulsion = 22308.435112 eV Total energy + Delta-G solvation = -3990.525275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.18366 -41.85098 -40.49063 -39.07292 -35.29276 -35.06319 -34.60051 -34.42085 -33.60720 -30.69682 -28.72438 -27.70439 -26.93955 -26.75209 -24.76090 -23.76965 -22.16168 -21.22278 -20.79942 -19.82553 -18.94839 -18.59571 -18.21998 -17.76292 -17.31319 -17.05473 -16.88861 -16.70060 -16.20761 -15.95241 -15.73007 -15.43580 -14.90122 -14.74594 -14.52833 -14.43967 -13.97161 -13.85481 -13.64161 -13.34632 -13.29568 -13.17863 -13.06017 -12.90143 -12.61342 -12.45465 -12.14831 -11.76411 -11.63187 -11.61302 -11.47634 -11.15402 -10.98512 -10.43573 -10.40173 -10.30784 -10.10827 -8.68170 -8.36043 -6.14045 -0.03773 0.62623 1.23914 1.41610 1.44342 1.52077 1.55683 1.66923 1.90748 2.03668 2.19903 2.26327 2.79378 2.98213 3.28197 3.30010 3.43903 3.50938 3.72156 3.91143 3.93569 4.03401 4.10235 4.24560 4.29842 4.45767 4.55712 4.68594 4.71797 4.76884 4.79475 4.81759 4.83068 4.92493 4.93359 5.19031 5.24247 5.40618 5.54796 6.09379 6.18498 6.36106 6.73665 6.98077 7.05409 7.15101 8.73171 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.003197 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.613676 B = 8757.037526 C =11596.137484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.015 4.015 3 C -0.199 4.199 4 C -0.050 4.050 5 C 0.604 3.396 6 O -0.545 6.545 7 N -0.695 5.695 8 C 0.115 3.885 9 H 0.113 0.887 10 C -0.151 4.151 11 C 0.111 3.889 12 H 0.091 0.909 13 N -0.704 5.704 14 C 0.539 3.461 15 O -0.553 6.553 16 C -0.134 4.134 17 S -0.143 6.143 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.259 1.259 26 C -0.131 4.131 27 N -0.353 5.353 28 O 0.118 5.882 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.197 0.803 33 H 0.407 0.593 34 H 0.057 0.943 35 H 0.131 0.869 36 H 0.408 0.592 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.138 0.862 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.651 22.885 -1.129 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C -0.221 4.221 4 C -0.208 4.208 5 C 0.389 3.611 6 O -0.421 6.421 7 N -0.347 5.347 8 C 0.011 3.989 9 H 0.131 0.869 10 C -0.190 4.190 11 C 0.006 3.994 12 H 0.109 0.891 13 N -0.358 5.358 14 C 0.325 3.675 15 O -0.430 6.430 16 C -0.285 4.285 17 S 0.084 5.916 18 C -0.696 4.696 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.183 1.183 26 C -0.170 4.170 27 N -0.055 5.055 28 O 0.042 5.958 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.214 0.786 33 H 0.244 0.756 34 H 0.076 0.924 35 H 0.149 0.851 36 H 0.245 0.755 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.156 0.844 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.789 22.519 -0.183 26.941 hybrid contribution -2.001 -0.769 -0.852 2.307 sum -16.790 21.750 -1.035 27.496 Atomic orbital electron populations 1.20686 0.79948 1.06368 1.06203 1.25328 0.98172 0.84060 1.00202 1.22680 0.88668 1.02759 1.08018 1.23590 0.97294 0.90575 1.09319 1.17000 0.82053 0.86115 0.75935 1.90773 1.87162 1.13229 1.50927 1.45758 1.04943 1.10836 1.73123 1.22129 0.81634 0.96746 0.98402 0.86906 1.23787 0.98397 0.99900 0.96881 1.22087 0.96931 0.83974 0.96439 0.89112 1.45657 1.23009 1.04140 1.63031 1.19995 0.85475 0.84661 0.77367 1.90696 1.22408 1.87120 1.42823 1.23399 1.03278 0.95882 1.05918 1.85506 1.29045 0.96333 1.80705 1.23202 1.06730 0.93139 1.46536 0.90101 1.26115 0.97578 1.00870 0.94466 1.70177 1.23223 1.19769 1.41538 0.84967 0.78251 0.76548 0.78314 1.19240 1.20180 1.18258 1.23721 0.99600 0.96754 0.96885 1.74244 0.98478 1.15747 1.16983 1.84790 1.10914 1.34534 1.65552 0.88555 0.86918 0.86843 0.78583 0.75628 0.92434 0.85122 0.75517 0.87429 0.87614 0.91949 0.84366 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.44 71.23 0.74 0.50 16 2 C -0.01 -0.19 7.47 25.01 0.19 -0.01 16 3 C -0.20 -3.23 10.92 22.60 0.25 -2.98 16 4 C -0.05 -1.11 7.19 42.96 0.31 -0.80 16 5 C 0.60 14.39 7.85 86.93 0.68 15.07 16 6 O -0.54 -14.96 16.59 -3.71 -0.06 -15.02 16 7 N -0.70 -14.67 4.96 -442.45 -2.19 -16.86 16 8 C 0.12 2.06 4.28 45.52 0.19 2.25 16 9 H 0.11 1.98 7.54 -2.39 -0.02 1.96 16 10 C -0.15 -2.93 7.61 31.12 0.24 -2.70 16 11 C 0.11 2.33 4.00 45.52 0.18 2.51 16 12 H 0.09 2.10 8.05 -2.39 -0.02 2.08 16 13 N -0.70 -17.84 4.34 -440.03 -1.91 -19.75 16 14 C 0.54 19.73 7.85 87.66 0.69 20.42 16 15 O -0.55 -25.07 15.80 -3.02 -0.05 -25.11 16 16 C -0.13 -5.38 6.16 71.24 0.44 -4.94 16 17 S -0.14 -7.97 20.57 -56.49 -1.16 -9.14 16 18 C -0.55 -31.59 9.50 67.96 0.65 -30.94 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.83 5.49 84.86 0.47 1.30 16 21 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 22 Si 1.00 43.82 29.55 68.60 2.03 45.84 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C -0.13 -1.91 7.57 31.12 0.24 -1.67 16 27 N -0.35 -8.37 11.84 -49.51 -0.59 -8.95 16 28 O 0.12 2.34 11.18 71.86 0.80 3.14 16 29 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.41 9.02 6.95 -92.71 -0.64 8.38 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 8.53 7.83 -92.71 -0.73 7.81 16 37 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 38 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.14 1.30 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 Total: -1.00 -82.03 373.51 2.14 -79.90 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.28 Total: 23.78 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.26 Total: -1.99 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.40 Total: -101.40 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: 0.69 Total: -36.99 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.14 kcal Total: -82.03 2.14 -79.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525269148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.552 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds