Wall clock time and date at job start Tue Mar 31 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33685 * 126.27217 * 2 1 4 4 C 1.30623 * 108.99647 * 179.97438 * 3 2 1 5 5 O 1.33668 * 109.15089 * 359.73500 * 4 3 2 6 6 C 1.35337 * 107.68399 * 0.43193 * 5 4 3 7 7 C 1.46724 * 126.64468 * 179.84095 * 6 5 4 8 8 O 1.21687 * 120.00001 * 179.68484 * 7 6 5 9 9 N 1.34777 * 119.99794 * 359.68759 * 7 6 5 10 10 C 1.46503 * 119.99947 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84783 * 23.80492 * 10 9 7 12 12 C 1.53783 * 113.61473 * 154.99925 * 10 9 7 13 13 C 1.53787 * 87.07909 * 89.19987 * 12 10 9 14 14 H 1.09001 * 113.61211 * 140.06577 * 13 12 10 15 15 N 1.46500 * 113.61488 * 270.88003 * 13 12 10 16 16 C 1.34772 * 120.00383 * 203.47168 * 15 13 12 17 17 O 1.21281 * 119.99720 * 0.02562 * 16 15 13 18 18 C 1.50694 * 120.00401 * 180.02562 * 16 15 13 19 19 S 1.81005 * 109.47415 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99931 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00293 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99843 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99846 * 359.71985 * 22 20 19 24 24 Si 1.86795 * 120.00110 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47071 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47211 * 119.99794 * 24 22 20 27 27 H 1.48493 * 109.47327 * 239.99662 * 24 22 20 28 28 C 1.53780 * 87.17352 * 25.47327 * 13 12 10 29 29 H 1.08998 * 109.46444 * 270.03840 * 1 2 3 30 30 H 1.09002 * 109.47253 * 30.03842 * 1 2 3 31 31 H 1.09006 * 109.47123 * 150.04067 * 1 2 3 32 32 H 1.08001 * 125.42633 * 179.97438 * 4 3 2 33 33 H 0.97002 * 120.00094 * 0.02562 * 9 7 6 34 34 H 1.09005 * 113.61126 * 334.65398 * 12 10 9 35 35 H 1.08997 * 113.61707 * 203.75176 * 12 10 9 36 36 H 0.97003 * 119.99680 * 23.47796 * 15 13 12 37 37 H 1.09002 * 109.47362 * 59.99907 * 18 16 15 38 38 H 1.09005 * 109.46865 * 300.00021 * 18 16 15 39 39 H 0.97000 * 120.00210 * 180.02562 * 23 22 20 40 40 H 1.09006 * 113.60632 * 89.07262 * 28 13 12 41 41 H 1.08997 * 113.61300 * 219.97128 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6461 0.0068 6 6 2.3137 -1.0992 0.0005 7 6 1.8827 -2.5017 0.0006 8 8 0.6966 -2.7737 0.0003 9 7 2.8004 -3.4887 0.0012 10 6 2.3701 -4.8891 0.0019 11 1 1.3673 -5.0239 -0.4036 12 6 3.4098 -5.8534 -0.5931 13 6 3.9904 -5.9777 0.8256 14 1 4.2971 -6.9911 1.0846 15 7 5.0170 -4.9776 1.1292 16 6 5.9303 -5.2197 2.0902 17 8 5.9027 -6.2658 2.7033 18 6 6.9859 -4.1908 2.4030 19 16 8.0534 -4.8053 3.7294 20 6 9.1617 -3.4445 3.8855 21 1 9.0453 -2.5778 3.2517 22 6 10.1850 -3.4868 4.8223 23 7 10.3241 -4.5413 5.5978 24 14 11.3596 -2.0439 4.9883 25 1 10.9876 -0.9881 4.0126 26 1 11.2790 -1.4959 6.3661 27 1 12.7464 -2.5008 4.7177 28 6 2.5930 -5.6044 1.3479 29 1 -0.3632 0.0007 1.0277 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3634 -0.8904 -0.5132 32 1 4.4044 1.3443 0.0003 33 1 3.7459 -3.2719 0.0018 34 1 4.0885 -5.3800 -1.3027 35 1 2.9793 -6.7805 -0.9715 36 1 5.0393 -4.1411 0.6387 37 1 6.5075 -3.2647 2.7218 38 1 7.5849 -4.0023 1.5120 39 1 11.0391 -4.5708 6.2527 40 1 1.9396 -6.4637 1.4992 41 1 2.6128 -4.9303 2.2043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525294375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:38 Heat of formation + Delta-G solvation = -21.169366 kcal Electronic energy + Delta-G solvation = -26414.215640 eV Core-core repulsion = 22423.307658 eV Total energy + Delta-G solvation = -3990.907982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.83748 -40.91591 -39.34915 -38.00246 -35.78230 -33.95279 -32.94207 -32.47583 -31.92541 -29.25754 -28.30084 -26.08800 -25.59234 -25.13926 -23.76857 -22.26305 -21.35810 -20.38580 -20.17976 -18.58378 -17.89819 -17.29897 -16.99953 -16.57714 -16.37599 -16.00494 -15.36072 -15.13455 -14.93777 -14.85270 -14.69649 -14.56612 -14.00623 -13.63113 -13.41144 -13.26964 -12.98809 -12.92934 -12.68974 -12.58198 -12.17431 -12.00705 -11.49852 -11.29328 -11.12301 -11.10082 -11.07286 -10.84388 -10.72253 -10.53822 -9.86073 -9.65081 -9.51738 -9.26858 -9.12914 -9.02603 -8.29684 -6.55834 -6.26692 -3.97688 0.40149 2.01052 2.03291 2.57990 2.64963 2.94615 2.96215 3.17871 3.23954 3.27951 3.58574 3.65766 4.08980 4.15006 4.20115 4.31089 4.33954 4.62298 4.78335 4.99652 5.03401 5.07165 5.08769 5.25776 5.32009 5.36334 5.38231 5.47641 5.49010 5.56972 5.60221 5.77462 5.77618 5.80985 5.91105 6.03857 6.08007 6.53331 6.83576 7.17106 7.49817 7.54972 7.57696 8.30195 8.47532 9.18773 10.80779 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.002973 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.551144 B = 9415.794739 C =11686.216751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.086 3.914 3 N -0.495 5.495 4 C 0.212 3.788 5 O -0.191 6.191 6 C -0.125 4.125 7 C 0.616 3.384 8 O -0.510 6.510 9 N -0.701 5.701 10 C 0.116 3.884 11 H 0.111 0.889 12 C -0.152 4.152 13 C 0.121 3.879 14 H 0.109 0.891 15 N -0.723 5.723 16 C 0.535 3.465 17 O -0.510 6.510 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.164 4.164 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.259 0.741 33 H 0.401 0.599 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.389 0.611 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.104 0.896 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 5.871 -16.170 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 N -0.225 5.225 4 C -0.013 4.013 5 O -0.076 6.076 6 C -0.180 4.180 7 C 0.402 3.598 8 O -0.387 6.387 9 N -0.353 5.353 10 C 0.011 3.989 11 H 0.129 0.871 12 C -0.191 4.191 13 C 0.014 3.986 14 H 0.127 0.873 15 N -0.379 5.379 16 C 0.322 3.678 17 O -0.383 6.383 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.204 4.204 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.275 0.725 33 H 0.237 0.763 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.224 0.776 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.437 4.401 -14.987 24.164 hybrid contribution 1.815 2.230 -0.737 2.968 sum -16.621 6.631 -15.724 23.822 Atomic orbital electron populations 1.20423 0.85231 1.04417 1.03924 1.22110 0.98461 0.86325 0.96924 1.70395 1.01351 1.31315 1.19391 1.28458 0.97690 0.79264 0.95856 1.84500 1.29417 1.24654 1.69071 1.22805 0.81716 0.96106 1.17341 1.16247 0.85694 0.81320 0.76502 1.90865 1.15589 1.81889 1.50376 1.45694 1.09533 1.05697 1.74347 1.22114 0.99796 0.79099 0.97864 0.87098 1.23725 0.97963 1.00447 0.96931 1.21877 0.87565 0.94497 0.94620 0.87333 1.45853 1.31521 1.20345 1.40132 1.20348 0.81015 0.88019 0.78437 1.90711 1.72533 1.26278 1.48767 1.23549 0.99869 1.00715 1.06432 1.85430 1.31439 1.26041 1.40214 1.22894 1.16525 1.04313 1.24676 0.90876 1.25001 0.97083 0.96835 0.94681 1.70024 1.31538 1.28089 1.20557 0.86110 0.80019 0.81153 0.78167 1.19625 1.20534 1.20540 1.23984 0.97502 1.01285 0.97632 0.89792 0.90340 0.88627 0.72522 0.76263 0.90142 0.86899 0.77644 0.89262 0.89127 0.92182 0.87785 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.87 36.01 0.36 -0.37 16 2 C 0.09 0.91 7.16 -82.47 -0.59 0.32 16 3 N -0.50 -5.08 11.26 -10.88 -0.12 -5.20 16 4 C 0.21 1.61 13.21 52.25 0.69 2.30 16 5 O -0.19 -1.73 10.57 4.44 0.05 -1.69 16 6 C -0.12 -1.31 7.18 -36.84 -0.26 -1.57 16 7 C 0.62 6.63 7.79 -12.83 -0.10 6.53 16 8 O -0.51 -6.41 14.39 5.20 0.07 -6.34 16 9 N -0.70 -6.22 5.14 -54.17 -0.28 -6.50 16 10 C 0.12 0.95 4.33 -66.97 -0.29 0.66 16 11 H 0.11 0.91 7.46 -51.93 -0.39 0.52 16 12 C -0.15 -1.05 7.58 -25.91 -0.20 -1.24 16 13 C 0.12 1.25 4.30 -67.12 -0.29 0.96 16 14 H 0.11 1.30 7.50 -51.93 -0.39 0.91 16 15 N -0.72 -8.80 5.12 -53.02 -0.27 -9.07 16 16 C 0.54 9.44 7.85 -10.99 -0.09 9.35 16 17 O -0.51 -11.06 15.48 5.56 0.09 -10.97 16 18 C -0.16 -2.98 6.16 36.00 0.22 -2.76 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 24 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C -0.16 -1.56 7.70 -25.78 -0.20 -1.75 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.87 6.47 -51.93 -0.34 0.53 16 32 H 0.26 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.40 3.16 5.95 -40.82 -0.24 2.92 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.39 3.72 6.17 -40.82 -0.25 3.47 16 37 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 38 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -36.68 367.59 -6.93 -43.61 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.96 Total: 3.67 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.55 Total: -0.25 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.06 Total: -45.81 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.21 Total: -19.00 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.68 -6.93 -43.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525294375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.440 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds