Wall clock time and date at job start Tue Mar 31 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33685 * 126.27217 * 2 1 4 4 C 1.30623 * 108.99647 * 179.97438 * 3 2 1 5 5 O 1.33668 * 109.15089 * 359.73500 * 4 3 2 6 6 C 1.35337 * 107.68399 * 0.43193 * 5 4 3 7 7 C 1.46724 * 126.64468 * 179.84095 * 6 5 4 8 8 O 1.21687 * 120.00001 * 179.68484 * 7 6 5 9 9 N 1.34777 * 119.99794 * 359.68759 * 7 6 5 10 10 C 1.46503 * 119.99947 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84783 * 23.80492 * 10 9 7 12 12 C 1.53783 * 113.61473 * 154.99925 * 10 9 7 13 13 C 1.53787 * 87.07909 * 89.19987 * 12 10 9 14 14 H 1.09001 * 113.61211 * 140.06577 * 13 12 10 15 15 N 1.46500 * 113.61488 * 270.88003 * 13 12 10 16 16 C 1.34772 * 120.00383 * 203.47168 * 15 13 12 17 17 O 1.21281 * 119.99720 * 0.02562 * 16 15 13 18 18 C 1.50694 * 120.00401 * 180.02562 * 16 15 13 19 19 S 1.81005 * 109.47415 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99931 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00293 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99843 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99846 * 359.71985 * 22 20 19 24 24 Si 1.86795 * 120.00110 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47071 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47211 * 119.99794 * 24 22 20 27 27 H 1.48493 * 109.47327 * 239.99662 * 24 22 20 28 28 C 1.53780 * 87.17352 * 25.47327 * 13 12 10 29 29 H 1.08998 * 109.46444 * 270.03840 * 1 2 3 30 30 H 1.09002 * 109.47253 * 30.03842 * 1 2 3 31 31 H 1.09006 * 109.47123 * 150.04067 * 1 2 3 32 32 H 1.08001 * 125.42633 * 179.97438 * 4 3 2 33 33 H 0.97002 * 120.00094 * 0.02562 * 9 7 6 34 34 H 1.09005 * 113.61126 * 334.65398 * 12 10 9 35 35 H 1.08997 * 113.61707 * 203.75176 * 12 10 9 36 36 H 0.97003 * 119.99680 * 23.47796 * 15 13 12 37 37 H 1.09002 * 109.47362 * 59.99907 * 18 16 15 38 38 H 1.09005 * 109.46865 * 300.00021 * 18 16 15 39 39 H 0.97000 * 120.00210 * 180.02562 * 23 22 20 40 40 H 1.09006 * 113.60632 * 89.07262 * 28 13 12 41 41 H 1.08997 * 113.61300 * 219.97128 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6461 0.0068 6 6 2.3137 -1.0992 0.0005 7 6 1.8827 -2.5017 0.0006 8 8 0.6966 -2.7737 0.0003 9 7 2.8004 -3.4887 0.0012 10 6 2.3701 -4.8891 0.0019 11 1 1.3673 -5.0239 -0.4036 12 6 3.4098 -5.8534 -0.5931 13 6 3.9904 -5.9777 0.8256 14 1 4.2971 -6.9911 1.0846 15 7 5.0170 -4.9776 1.1292 16 6 5.9303 -5.2197 2.0902 17 8 5.9027 -6.2658 2.7033 18 6 6.9859 -4.1908 2.4030 19 16 8.0534 -4.8053 3.7294 20 6 9.1617 -3.4445 3.8855 21 1 9.0453 -2.5778 3.2517 22 6 10.1850 -3.4868 4.8223 23 7 10.3241 -4.5413 5.5978 24 14 11.3596 -2.0439 4.9883 25 1 10.9876 -0.9881 4.0126 26 1 11.2790 -1.4959 6.3661 27 1 12.7464 -2.5008 4.7177 28 6 2.5930 -5.6044 1.3479 29 1 -0.3632 0.0007 1.0277 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3634 -0.8904 -0.5132 32 1 4.4044 1.3443 0.0003 33 1 3.7459 -3.2719 0.0018 34 1 4.0885 -5.3800 -1.3027 35 1 2.9793 -6.7805 -0.9715 36 1 5.0393 -4.1411 0.6387 37 1 6.5075 -3.2647 2.7218 38 1 7.5849 -4.0023 1.5120 39 1 11.0391 -4.5708 6.2527 40 1 1.9396 -6.4637 1.4992 41 1 2.6128 -4.9303 2.2043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525294375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:37 Heat of formation + Delta-G solvation = -50.985753 kcal Electronic energy + Delta-G solvation = -26415.508575 eV Core-core repulsion = 22423.307658 eV Total energy + Delta-G solvation = -3992.200917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.51502 -41.78789 -40.42652 -39.07738 -36.48330 -34.91336 -34.58390 -33.99538 -32.63351 -30.70450 -29.03219 -27.68624 -26.77488 -25.94940 -24.52888 -23.05695 -22.24795 -21.47358 -21.02484 -19.80739 -19.33959 -18.05201 -17.96637 -17.49751 -17.23609 -17.08924 -16.88055 -16.50975 -16.09978 -15.95885 -15.71222 -15.42399 -15.37452 -14.71520 -14.47198 -14.30685 -14.08271 -14.00725 -13.57362 -13.33261 -13.28362 -13.16182 -13.00145 -12.91851 -12.58649 -12.19948 -12.02957 -11.91094 -11.74642 -11.52034 -11.32433 -11.16180 -10.99339 -10.41278 -10.27808 -10.14609 -9.96344 -8.67245 -8.35126 -6.13065 -0.31002 1.24414 1.33160 1.35795 1.41638 1.46526 1.54723 1.57205 1.85972 1.92045 2.25773 2.28512 2.99522 3.11025 3.29231 3.37423 3.49325 3.62137 3.63883 3.84545 3.93506 4.08941 4.27802 4.35762 4.40268 4.47224 4.54981 4.65334 4.73742 4.77296 4.80099 4.81931 4.95818 4.97741 5.00116 5.22543 5.29325 5.42144 5.57180 6.10847 6.19794 6.36663 6.48935 6.81377 7.06571 7.17129 8.74271 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.002973 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.551144 B = 9415.794739 C =11686.216751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.074 3.926 3 N -0.526 5.526 4 C 0.230 3.770 5 O -0.193 6.193 6 C -0.144 4.144 7 C 0.615 3.385 8 O -0.535 6.535 9 N -0.694 5.694 10 C 0.118 3.882 11 H 0.116 0.884 12 C -0.126 4.126 13 C 0.104 3.896 14 H 0.092 0.908 15 N -0.698 5.698 16 C 0.538 3.462 17 O -0.558 6.558 18 C -0.132 4.132 19 S -0.150 6.150 20 C -0.544 4.544 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.254 1.254 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.163 4.163 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.304 0.696 33 H 0.405 0.595 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.404 0.596 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.271 0.729 40 H 0.121 0.879 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.436 7.717 -18.222 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.255 5.255 4 C 0.005 3.995 5 O -0.079 6.079 6 C -0.199 4.199 7 C 0.402 3.598 8 O -0.414 6.414 9 N -0.346 5.346 10 C 0.014 3.986 11 H 0.134 0.866 12 C -0.164 4.164 13 C -0.001 4.001 14 H 0.110 0.890 15 N -0.353 5.353 16 C 0.324 3.676 17 O -0.435 6.435 18 C -0.283 4.283 19 S 0.077 5.923 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.200 1.200 28 C -0.203 4.203 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.319 0.681 33 H 0.243 0.757 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.242 0.758 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.373 6.268 -17.091 25.864 hybrid contribution 1.701 1.684 -0.161 2.398 sum -16.672 7.952 -17.252 25.275 Atomic orbital electron populations 1.20426 0.84647 1.04624 1.04081 1.22424 0.99246 0.86689 0.96586 1.70414 1.02494 1.31533 1.21055 1.29558 0.98239 0.79014 0.92639 1.84500 1.28700 1.25398 1.69294 1.22738 0.82308 0.96032 1.18843 1.16328 0.85574 0.81741 0.76195 1.90846 1.16522 1.82334 1.51667 1.45668 1.09530 1.05755 1.73634 1.22160 1.00657 0.78800 0.97024 0.86584 1.23687 0.96837 1.01215 0.94660 1.22140 0.87132 0.93077 0.97747 0.88957 1.45571 1.30264 1.21310 1.38169 1.20073 0.81513 0.86902 0.79126 1.90701 1.73921 1.27993 1.50919 1.23390 0.99298 1.01387 1.04206 1.85620 1.33969 1.28191 1.44546 1.23235 1.16631 1.04413 1.24902 0.89736 1.26135 0.99058 0.99916 0.94119 1.70190 1.32551 1.30613 1.21502 0.84907 0.77188 0.77391 0.78483 1.17752 1.20144 1.20012 1.24022 0.97175 1.01672 0.97409 0.89607 0.89270 0.89212 0.68084 0.75712 0.88836 0.84154 0.75786 0.87434 0.86827 0.92031 0.86071 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.87 71.24 0.70 -0.68 16 2 C 0.07 1.51 7.16 41.84 0.30 1.81 16 3 N -0.53 -9.96 11.26 -303.12 -3.41 -13.37 16 4 C 0.23 2.89 13.21 130.42 1.72 4.61 16 5 O -0.19 -3.10 10.57 -7.04 -0.07 -3.17 16 6 C -0.14 -2.87 7.18 24.05 0.17 -2.70 16 7 C 0.62 12.62 7.79 86.46 0.67 13.30 16 8 O -0.53 -13.18 14.39 -4.31 -0.06 -13.24 16 9 N -0.69 -11.05 5.14 -443.51 -2.28 -13.33 16 10 C 0.12 1.67 4.33 45.61 0.20 1.87 16 11 H 0.12 1.63 7.46 -2.39 -0.02 1.62 16 12 C -0.13 -1.33 7.58 31.12 0.24 -1.10 16 13 C 0.10 1.99 4.30 45.52 0.20 2.19 16 14 H 0.09 2.15 7.50 -2.39 -0.02 2.13 16 15 N -0.70 -15.86 5.12 -440.04 -2.25 -18.12 16 16 C 0.54 18.70 7.85 87.66 0.69 19.39 16 17 O -0.56 -24.77 15.48 -3.03 -0.05 -24.82 16 18 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 19 S -0.15 -8.14 20.57 -56.49 -1.16 -9.31 16 20 C -0.54 -30.25 9.50 67.96 0.65 -29.61 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 24 Si 1.00 42.59 29.55 68.60 2.03 44.62 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 C -0.16 -2.89 7.70 31.21 0.24 -2.65 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.63 6.47 -2.38 -0.02 1.62 16 32 H 0.30 0.30 8.06 -2.91 -0.02 0.28 16 33 H 0.41 5.44 5.95 -92.71 -0.55 4.89 16 34 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.40 6.69 6.17 -92.71 -0.57 6.12 16 37 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 38 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -83.18 367.59 -0.32 -83.50 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.03 Total: 19.19 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.68 Total: 3.08 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -7.66 Total: -99.86 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.18 Total: -41.22 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.31 kcal Total: -83.18 -0.32 -83.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525294375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.518 kcal (2) G-P(sol) polarization free energy of solvation -83.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds