Wall clock time and date at job start Tue Mar 31 2020 22:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47231 * 2 1 4 4 C 1.35315 * 126.66263 * 90.26166 * 3 2 1 5 5 C 1.42275 * 103.92312 * 180.11024 * 4 3 2 6 6 C 1.48324 * 126.94207 * 179.91102 * 5 4 3 7 7 O 1.21503 * 119.99783 * 359.70800 * 6 5 4 8 8 N 1.34773 * 120.00209 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00093 * 179.71998 * 8 6 5 10 10 C 1.53939 * 113.74496 * 253.74241 * 9 8 6 11 11 N 1.47805 * 86.03921 * 222.08772 * 10 9 8 12 12 C 1.34784 * 134.45794 * 204.64835 * 11 10 9 13 13 O 1.21287 * 119.99841 * 179.86198 * 12 11 10 14 14 C 1.50691 * 119.99814 * 359.86490 * 12 11 10 15 15 S 1.81007 * 109.47216 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00147 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00104 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00184 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99676 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00100 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46956 * 90.00201 * 20 18 16 22 22 H 1.48505 * 109.46786 * 209.99810 * 20 18 16 23 23 H 1.48498 * 109.47503 * 330.00379 * 20 18 16 24 24 C 1.47581 * 91.04978 * 24.55083 * 11 10 9 25 25 N 1.30988 * 106.11941 * 359.64842 * 5 4 3 26 26 O 1.20907 * 111.43783 * 0.22329 * 25 5 4 27 27 H 1.08998 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47170 * 299.99973 * 1 2 3 29 29 H 1.09000 * 109.47375 * 59.99795 * 1 2 3 30 30 H 1.09002 * 109.46731 * 240.00182 * 2 1 3 31 31 H 1.09000 * 109.47375 * 120.00205 * 2 1 3 32 32 H 1.08006 * 128.04493 * 0.02562 * 4 3 2 33 33 H 0.97000 * 120.00112 * 359.72885 * 8 6 5 34 34 H 1.08999 * 112.94257 * 25.33969 * 9 8 6 35 35 H 1.09002 * 113.77002 * 336.35364 * 10 9 8 36 36 H 1.09007 * 113.76765 * 107.74890 * 10 9 8 37 37 H 1.09000 * 109.47107 * 300.00092 * 14 12 11 38 38 H 1.09002 * 109.47475 * 60.00038 * 14 12 11 39 39 H 0.96999 * 119.99927 * 180.02562 * 19 18 16 40 40 H 1.09006 * 113.76919 * 221.15223 * 24 11 10 41 41 H 1.08994 * 113.77035 * 89.76116 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3063 2.1809 1.0854 5 6 2.7389 3.4197 0.5355 6 6 3.1661 4.6267 1.2843 7 8 3.1637 4.6204 2.4993 8 7 3.5519 5.7323 0.6169 9 6 3.9680 6.9265 1.3566 10 6 2.9325 8.0652 1.3285 11 7 4.0838 8.9692 1.1237 12 6 4.3134 10.2751 1.3658 13 8 5.3883 10.7634 1.0880 14 6 3.2347 11.1282 1.9815 15 16 3.8434 12.8214 2.1787 16 6 2.4222 13.5759 2.8965 17 1 1.5340 12.9895 3.0799 18 6 2.4441 14.9240 3.2263 19 7 3.5264 15.6389 3.0023 20 14 0.9371 15.7241 3.9867 21 1 1.0124 15.6158 5.4659 22 1 0.8873 17.1562 3.5971 23 1 -0.2864 15.0363 3.5018 24 6 4.8814 7.8677 0.5504 25 7 2.6890 3.2772 -0.7656 26 8 2.2995 2.1752 -1.0749 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2162 1.9106 2.1272 33 1 3.5539 5.7374 -0.3530 34 1 4.3433 6.6991 2.3543 35 1 2.2527 8.0199 0.4776 36 1 2.4183 8.2149 2.2779 37 1 2.3587 11.1307 1.3328 38 1 2.9634 10.7234 2.9566 39 1 3.5419 16.5809 3.2332 40 1 5.9205 7.8600 0.8798 41 1 4.7754 7.7644 -0.5294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530567090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:32 Heat of formation + Delta-G solvation = 26.612739 kcal Electronic energy + Delta-G solvation = -25149.084795 eV Core-core repulsion = 21160.248800 eV Total energy + Delta-G solvation = -3988.835994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.59587 -40.76295 -39.40140 -37.51385 -35.53197 -34.60424 -33.94180 -32.43623 -30.78088 -30.31565 -27.92442 -26.37350 -25.57245 -25.30042 -24.64315 -23.08242 -21.70366 -20.70498 -19.12199 -18.35083 -18.06319 -17.73727 -17.37324 -16.97109 -16.63556 -15.66751 -15.30062 -15.24991 -15.03831 -14.82286 -14.80716 -14.27219 -14.00617 -13.97905 -13.50844 -13.25533 -12.99125 -12.93533 -12.68352 -12.51758 -12.44130 -12.13831 -11.83952 -11.65979 -11.57668 -11.06545 -11.02800 -10.97607 -10.80344 -10.75429 -10.00107 -9.83857 -9.67572 -9.43434 -9.07340 -8.71748 -8.25852 -6.51888 -6.22374 -3.93453 0.59252 1.14149 2.22909 2.41354 2.65831 2.75126 3.03482 3.22286 3.23552 3.29669 3.43870 3.53109 3.89649 4.03266 4.19354 4.31736 4.43851 4.48053 4.51096 4.59152 4.73539 4.82041 4.85499 5.01106 5.12870 5.15044 5.17533 5.30212 5.30423 5.35889 5.40433 5.51014 5.52701 5.54417 5.85094 5.90483 5.99695 6.12653 6.84175 7.44387 7.59021 7.60214 7.70154 8.34605 8.46503 9.22881 10.85101 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.001725 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.879421 B =16232.543918 C =17026.036272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.043 4.043 3 C -0.028 4.028 4 C -0.181 4.181 5 C -0.025 4.025 6 C 0.603 3.397 7 O -0.514 6.514 8 N -0.704 5.704 9 C 0.110 3.890 10 C 0.091 3.909 11 N -0.649 5.649 12 C 0.561 3.439 13 O -0.511 6.511 14 C -0.146 4.146 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.104 3.896 25 N -0.331 5.331 26 O 0.124 5.876 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.410 0.590 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.092 0.908 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -34.870 -7.610 36.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.203 4.203 5 C -0.184 4.184 6 C 0.387 3.613 7 O -0.387 6.387 8 N -0.357 5.357 9 C 0.005 3.995 10 C -0.033 4.033 11 N -0.389 5.389 12 C 0.350 3.650 13 O -0.384 6.384 14 C -0.296 4.296 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.020 4.020 25 N -0.032 5.032 26 O 0.048 5.952 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.199 0.801 33 H 0.246 0.754 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.252 -32.823 -8.062 33.954 hybrid contribution -2.382 -0.291 0.999 2.600 sum -5.634 -33.114 -7.063 34.324 Atomic orbital electron populations 1.21822 0.93155 1.03058 1.03081 1.20191 0.96887 0.85884 1.05180 1.24572 1.01969 0.97251 0.85307 1.22454 1.04763 0.91457 1.01656 1.23450 1.06813 0.97916 0.90239 1.16878 0.77082 0.80934 0.86392 1.90845 1.52892 1.82605 1.12395 1.45766 1.66730 1.12326 1.10835 1.23285 0.95843 0.82129 0.98255 1.23693 0.91218 0.85350 1.03059 1.49775 1.16872 1.07786 1.64446 1.20038 0.88881 0.78785 0.77266 1.90725 1.25923 1.70506 1.51253 1.23485 0.99959 1.03166 1.02993 1.85396 1.21422 0.95022 1.81455 1.22860 1.00412 0.97453 1.47677 0.90888 1.24994 0.97098 0.96113 0.95338 1.70019 1.27248 1.08093 1.44892 0.86158 0.81591 0.78378 0.79314 1.20229 1.20718 1.19694 1.23372 0.97890 0.82314 0.98457 1.74181 1.13993 0.99540 1.15470 1.84777 1.59755 1.17154 1.33520 0.90978 0.91877 0.91904 0.88954 0.88096 0.80094 0.75399 0.84961 0.89379 0.88960 0.89244 0.89130 0.92154 0.88953 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 9.89 37.16 0.37 0.07 16 2 C -0.04 -0.09 6.50 -27.88 -0.18 -0.27 16 3 C -0.03 -0.15 6.73 -35.35 -0.24 -0.39 16 4 C -0.18 -1.26 10.92 -39.07 -0.43 -1.69 16 5 C -0.03 -0.23 7.19 -82.53 -0.59 -0.82 16 6 C 0.60 6.23 7.85 -12.11 -0.10 6.13 16 7 O -0.51 -6.79 16.57 5.36 0.09 -6.70 16 8 N -0.70 -5.97 5.37 -56.14 -0.30 -6.27 16 9 C 0.11 1.05 4.40 -70.15 -0.31 0.74 16 10 C 0.09 0.97 8.43 -2.85 -0.02 0.95 16 11 N -0.65 -9.30 3.61 -178.36 -0.64 -9.94 16 12 C 0.56 11.02 8.07 -10.99 -0.09 10.93 16 13 O -0.51 -12.05 16.59 5.55 0.09 -11.95 16 14 C -0.15 -3.05 5.91 36.00 0.21 -2.84 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.54 -15.45 9.50 30.94 0.29 -15.15 16 17 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 20 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.10 1.10 8.59 -2.97 -0.03 1.07 16 25 N -0.33 -2.89 11.84 33.29 0.39 -2.49 16 26 O 0.12 0.90 11.18 17.26 0.19 1.09 16 27 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.41 2.81 8.47 -40.82 -0.35 2.46 16 34 H 0.13 1.39 7.51 -51.93 -0.39 1.00 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 38 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -37.25 378.99 -7.52 -44.78 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.35 Total: -2.10 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.20 Total: 0.76 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.18 Total: -44.31 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.37 Total: -17.56 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.25 -7.52 -44.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530567090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.390 kcal (2) G-P(sol) polarization free energy of solvation -37.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds