Wall clock time and date at job start Tue Mar 31 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47231 * 2 1 4 4 C 1.35315 * 126.66263 * 90.26166 * 3 2 1 5 5 C 1.42275 * 103.92312 * 180.11024 * 4 3 2 6 6 C 1.48324 * 126.94207 * 179.91102 * 5 4 3 7 7 O 1.21503 * 119.99783 * 359.70800 * 6 5 4 8 8 N 1.34773 * 120.00209 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00093 * 179.71998 * 8 6 5 10 10 C 1.53939 * 113.74496 * 253.74241 * 9 8 6 11 11 N 1.47805 * 86.03921 * 222.08772 * 10 9 8 12 12 C 1.34784 * 134.45794 * 204.64835 * 11 10 9 13 13 O 1.21287 * 119.99841 * 179.86198 * 12 11 10 14 14 C 1.50691 * 119.99814 * 359.86490 * 12 11 10 15 15 S 1.81007 * 109.47216 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00147 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00104 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00184 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99676 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00100 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46956 * 90.00201 * 20 18 16 22 22 H 1.48505 * 109.46786 * 209.99810 * 20 18 16 23 23 H 1.48498 * 109.47503 * 330.00379 * 20 18 16 24 24 C 1.47581 * 91.04978 * 24.55083 * 11 10 9 25 25 N 1.30988 * 106.11941 * 359.64842 * 5 4 3 26 26 O 1.20907 * 111.43783 * 0.22329 * 25 5 4 27 27 H 1.08998 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47170 * 299.99973 * 1 2 3 29 29 H 1.09000 * 109.47375 * 59.99795 * 1 2 3 30 30 H 1.09002 * 109.46731 * 240.00182 * 2 1 3 31 31 H 1.09000 * 109.47375 * 120.00205 * 2 1 3 32 32 H 1.08006 * 128.04493 * 0.02562 * 4 3 2 33 33 H 0.97000 * 120.00112 * 359.72885 * 8 6 5 34 34 H 1.08999 * 112.94257 * 25.33969 * 9 8 6 35 35 H 1.09002 * 113.77002 * 336.35364 * 10 9 8 36 36 H 1.09007 * 113.76765 * 107.74890 * 10 9 8 37 37 H 1.09000 * 109.47107 * 300.00092 * 14 12 11 38 38 H 1.09002 * 109.47475 * 60.00038 * 14 12 11 39 39 H 0.96999 * 119.99927 * 180.02562 * 19 18 16 40 40 H 1.09006 * 113.76919 * 221.15223 * 24 11 10 41 41 H 1.08994 * 113.77035 * 89.76116 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3063 2.1809 1.0854 5 6 2.7389 3.4197 0.5355 6 6 3.1661 4.6267 1.2843 7 8 3.1637 4.6204 2.4993 8 7 3.5519 5.7323 0.6169 9 6 3.9680 6.9265 1.3566 10 6 2.9325 8.0652 1.3285 11 7 4.0838 8.9692 1.1237 12 6 4.3134 10.2751 1.3658 13 8 5.3883 10.7634 1.0880 14 6 3.2347 11.1282 1.9815 15 16 3.8434 12.8214 2.1787 16 6 2.4222 13.5759 2.8965 17 1 1.5340 12.9895 3.0799 18 6 2.4441 14.9240 3.2263 19 7 3.5264 15.6389 3.0023 20 14 0.9371 15.7241 3.9867 21 1 1.0124 15.6158 5.4659 22 1 0.8873 17.1562 3.5971 23 1 -0.2864 15.0363 3.5018 24 6 4.8814 7.8677 0.5504 25 7 2.6890 3.2772 -0.7656 26 8 2.2995 2.1752 -1.0749 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2162 1.9106 2.1272 33 1 3.5539 5.7374 -0.3530 34 1 4.3433 6.6991 2.3543 35 1 2.2527 8.0199 0.4776 36 1 2.4183 8.2149 2.2779 37 1 2.3587 11.1307 1.3328 38 1 2.9634 10.7234 2.9566 39 1 3.5419 16.5809 3.2332 40 1 5.9205 7.8600 0.8798 41 1 4.7754 7.7644 -0.5294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530567090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:31 Heat of formation + Delta-G solvation = -0.399332 kcal Electronic energy + Delta-G solvation = -25150.256126 eV Core-core repulsion = 21160.248800 eV Total energy + Delta-G solvation = -3990.007325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.16914 -41.76212 -40.47268 -38.84615 -35.85473 -35.39471 -34.65476 -34.60984 -31.87315 -31.11337 -29.16909 -27.71555 -27.26843 -26.14647 -24.96426 -23.67368 -22.62808 -21.42957 -20.46640 -19.57795 -18.92266 -18.62182 -18.15517 -18.09444 -17.71749 -16.99842 -16.89243 -16.39078 -16.17087 -15.73249 -15.65193 -15.43320 -15.10023 -14.76130 -14.38283 -14.27904 -14.21318 -13.85928 -13.79224 -13.48063 -13.23099 -13.19979 -12.91025 -12.89936 -12.63262 -12.51442 -12.40039 -11.84568 -11.77094 -11.66131 -11.60316 -11.16840 -11.06456 -10.47670 -10.42733 -10.33451 -9.91170 -8.71624 -8.37384 -6.16610 -0.03533 0.62704 1.10017 1.36474 1.40847 1.43437 1.51499 1.64566 1.91098 1.92897 2.06337 2.24467 2.80159 2.96795 3.05702 3.22520 3.43746 3.49335 3.78717 3.90314 3.91440 4.09268 4.16881 4.21717 4.31621 4.36790 4.38942 4.45869 4.46384 4.52079 4.70303 4.73846 4.74394 4.97371 5.09076 5.15153 5.17617 5.38926 5.42055 6.10681 6.17027 6.40900 6.77099 6.96578 6.99406 7.03659 8.71988 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.001725 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.879421 B =16232.543918 C =17026.036272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.042 4.042 3 C -0.011 4.011 4 C -0.196 4.196 5 C -0.044 4.044 6 C 0.605 3.395 7 O -0.548 6.548 8 N -0.690 5.690 9 C 0.126 3.874 10 C 0.090 3.910 11 N -0.647 5.647 12 C 0.560 3.440 13 O -0.562 6.562 14 C -0.121 4.121 15 S -0.148 6.148 16 C -0.549 4.549 17 H 0.082 0.918 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 1.000 3.000 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.258 1.258 24 C 0.104 3.896 25 N -0.343 5.343 26 O 0.123 5.877 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.191 0.809 33 H 0.421 0.579 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.091 0.909 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -37.480 -7.948 39.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 C -0.074 4.074 4 C -0.218 4.218 5 C -0.202 4.202 6 C 0.390 3.610 7 O -0.423 6.423 8 N -0.343 5.343 9 C 0.020 3.980 10 C -0.033 4.033 11 N -0.384 5.384 12 C 0.349 3.651 13 O -0.441 6.441 14 C -0.272 4.272 15 S 0.080 5.920 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.182 1.182 24 C -0.018 4.018 25 N -0.044 5.044 26 O 0.047 5.953 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.209 0.791 33 H 0.258 0.742 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.441 -35.499 -8.437 36.891 hybrid contribution -1.724 0.275 1.028 2.026 sum -7.165 -35.224 -7.409 36.701 Atomic orbital electron populations 1.21829 0.93020 1.03903 1.02346 1.20429 0.96801 0.83780 1.06960 1.25155 1.00067 0.98036 0.84129 1.22678 1.05429 0.91067 1.02656 1.23413 1.07969 0.98147 0.90659 1.17043 0.76479 0.81432 0.86047 1.90828 1.54471 1.83246 1.13800 1.45599 1.65960 1.11487 1.11240 1.22924 0.95036 0.82196 0.97808 1.24011 0.90849 0.83989 1.04436 1.49663 1.19233 1.06598 1.62910 1.19677 0.87714 0.80348 0.77343 1.90701 1.27509 1.72105 1.53735 1.23284 1.00682 0.98779 1.04452 1.85555 1.23608 1.00973 1.81906 1.23194 1.00489 0.98150 1.47805 0.89968 1.26138 1.00634 0.96687 0.95569 1.70181 1.29818 1.08546 1.46106 0.84940 0.77275 0.77241 0.78436 1.19264 1.20108 1.18225 1.23653 0.97746 0.80364 1.00087 1.74172 1.14597 1.00335 1.15258 1.84751 1.59404 1.16967 1.34194 0.89370 0.92601 0.92675 0.87289 0.86193 0.79149 0.74155 0.85734 0.86936 0.88467 0.87530 0.87624 0.91897 0.89106 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.26 9.89 71.98 0.71 0.45 16 2 C -0.04 -0.05 6.50 29.85 0.19 0.14 16 3 C -0.01 -0.10 6.73 25.01 0.17 0.07 16 4 C -0.20 -2.47 10.92 22.60 0.25 -2.23 16 5 C -0.04 -0.75 7.19 42.96 0.31 -0.44 16 6 C 0.61 11.84 7.85 86.93 0.68 12.52 16 7 O -0.55 -14.14 16.57 -3.73 -0.06 -14.20 16 8 N -0.69 -10.45 5.37 -449.83 -2.42 -12.87 16 9 C 0.13 2.19 4.40 46.75 0.21 2.39 16 10 C 0.09 1.70 8.43 86.44 0.73 2.43 16 11 N -0.65 -17.65 3.61 -836.58 -3.02 -20.67 16 12 C 0.56 21.99 8.07 87.65 0.71 22.70 16 13 O -0.56 -27.26 16.59 -3.05 -0.05 -27.31 16 14 C -0.12 -5.05 5.91 71.23 0.42 -4.63 16 15 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 16 C -0.55 -31.88 9.50 67.95 0.65 -31.24 16 17 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 18 C 0.01 0.84 5.49 84.86 0.47 1.31 16 19 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 20 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.10 2.02 8.59 86.48 0.74 2.76 16 25 N -0.34 -5.51 11.84 -49.51 -0.59 -6.10 16 26 O 0.12 1.59 11.18 71.95 0.80 2.40 16 27 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.05 0.19 8.14 -2.38 -0.02 0.17 16 29 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.42 4.81 8.47 -92.71 -0.79 4.02 16 34 H 0.12 2.48 7.51 -2.39 -0.02 2.46 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.81 8.14 -2.38 -0.02 1.80 16 37 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 38 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 Total: -1.00 -83.77 378.99 2.34 -81.43 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.29 Total: 10.68 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.23 Total: 6.26 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -5.74 Total: -95.79 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: 0.69 Total: -39.12 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -83.77 2.34 -81.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530567090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.032 kcal (2) G-P(sol) polarization free energy of solvation -83.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds