Wall clock time and date at job start Tue Mar 31 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47530 * 2 1 4 4 N 1.33698 * 126.27801 * 270.14316 * 3 2 1 5 5 C 1.30612 * 108.99618 * 180.24970 * 4 3 2 6 6 O 1.33661 * 109.15656 * 359.77065 * 5 4 3 7 7 C 1.35347 * 107.68507 * 359.97438 * 6 5 4 8 8 C 1.46717 * 126.64449 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00252 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00225 * 0.03235 * 8 7 6 11 11 C 1.46497 * 120.00099 * 179.97438 * 10 8 7 12 12 C 1.53501 * 114.20671 * 155.00122 * 11 10 8 13 13 N 1.47065 * 87.98741 * 87.71545 * 12 11 10 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31634 * 120.00298 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99861 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99884 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99830 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99545 * 22 20 18 26 26 C 1.47067 * 87.88381 * 27.34024 * 13 12 11 27 27 H 1.09002 * 109.46689 * 299.99792 * 1 2 3 28 28 H 1.08997 * 109.47102 * 59.99480 * 1 2 3 29 29 H 1.08998 * 109.47456 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46689 * 240.00208 * 2 1 3 31 31 H 1.08997 * 109.47102 * 120.00520 * 2 1 3 32 32 H 1.08004 * 125.42423 * 179.73943 * 5 4 3 33 33 H 0.97002 * 119.99788 * 359.97438 * 10 8 7 34 34 H 1.09000 * 113.28654 * 21.92894 * 11 10 8 35 35 H 1.09001 * 113.46643 * 332.93246 * 12 11 10 36 36 H 1.08996 * 113.46488 * 202.49706 * 12 11 10 37 37 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 38 38 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 39 39 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 40 40 H 1.09010 * 113.46411 * 87.43777 * 26 13 12 41 41 H 1.08997 * 113.47100 * 217.87349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2936 2.1675 -1.0778 5 6 2.7154 3.3411 -0.6898 6 8 2.7318 3.3817 0.6461 7 6 2.3009 2.1814 1.0992 8 6 2.1572 1.7750 2.5017 9 8 1.7568 0.6586 2.7737 10 7 2.4687 2.6382 3.4887 11 6 2.3247 2.2326 4.8891 12 6 3.2303 2.9996 5.8628 13 7 2.1699 4.0130 5.9692 14 6 2.1115 5.3313 6.2434 15 8 3.1292 5.9473 6.4792 16 6 0.7815 6.0397 6.2579 17 16 1.0331 7.7874 6.6557 18 6 -0.6339 8.3558 6.6051 19 1 -1.4329 7.6661 6.3766 20 6 -0.9210 9.6886 6.8652 21 7 -2.1663 10.1134 6.8269 22 14 0.4602 10.8800 7.2682 23 1 0.9680 11.4918 6.0140 24 1 -0.0517 11.9457 8.1668 25 1 1.5624 10.1497 7.9442 26 6 1.2007 2.9536 5.6512 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0054 4.1499 -1.3442 33 1 2.7882 3.5281 3.2719 34 1 2.3337 1.1515 5.0277 35 1 4.1442 3.3743 5.4019 36 1 3.4158 2.4658 6.7948 37 1 0.1361 5.5855 7.0097 38 1 0.3133 5.9536 5.2774 39 1 -2.3668 11.0449 7.0083 40 1 0.8512 2.4077 6.5277 41 1 0.3855 3.2892 5.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530634605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:17 Heat of formation + Delta-G solvation = -6.214039 kcal Electronic energy + Delta-G solvation = -26185.763652 eV Core-core repulsion = 22195.504182 eV Total energy + Delta-G solvation = -3990.259470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.86614 -40.96707 -39.40422 -37.72792 -36.14113 -34.06206 -33.31192 -32.48585 -30.80612 -29.97865 -27.99944 -26.25344 -25.64989 -25.12807 -24.02637 -22.55022 -21.38358 -20.97738 -19.24226 -18.74902 -17.78333 -17.28715 -17.04596 -16.88089 -16.57094 -15.73682 -15.59442 -15.21282 -15.05842 -14.90995 -14.77427 -14.32377 -14.00379 -13.80511 -13.65583 -13.13675 -13.08574 -13.03154 -12.85277 -12.32392 -12.11819 -11.87810 -11.53059 -11.42598 -11.39175 -11.29938 -11.27020 -11.05143 -10.67256 -10.56737 -9.90753 -9.76534 -9.58509 -9.30709 -9.05138 -8.85310 -8.56785 -6.98347 -6.33290 -4.06008 0.38116 1.99463 2.01096 2.47138 2.60047 2.63087 2.82996 3.05902 3.29011 3.46225 3.51782 3.60594 3.91489 4.22722 4.27455 4.29149 4.35671 4.61728 4.83334 4.90704 4.96011 4.98582 5.05683 5.06209 5.12364 5.12930 5.25434 5.26794 5.34585 5.37746 5.63685 5.68259 5.71891 5.74511 5.83424 5.93214 5.94564 6.01598 6.83578 7.16456 7.54405 7.61478 7.89699 8.29808 8.37205 9.12524 10.75942 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002495 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.267553 B =11218.399802 C =12004.127714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C 0.089 3.911 4 N -0.493 5.493 5 C 0.210 3.790 6 O -0.189 6.189 7 C -0.120 4.120 8 C 0.617 3.383 9 O -0.509 6.509 10 N -0.697 5.697 11 C 0.106 3.894 12 C 0.099 3.901 13 N -0.654 5.654 14 C 0.561 3.439 15 O -0.514 6.514 16 C -0.116 4.116 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.235 1.235 26 C 0.087 3.913 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.258 0.742 33 H 0.411 0.589 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.271 0.729 40 H 0.101 0.899 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.550 -21.483 -12.236 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.035 4.035 4 N -0.222 5.222 5 C -0.015 4.015 6 O -0.075 6.075 7 C -0.175 4.175 8 C 0.403 3.597 9 O -0.386 6.386 10 N -0.347 5.347 11 C -0.001 4.001 12 C -0.025 4.025 13 N -0.394 5.394 14 C 0.351 3.649 15 O -0.388 6.388 16 C -0.266 4.266 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.038 4.038 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.274 0.726 33 H 0.247 0.753 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.585 -21.056 -12.189 26.532 hybrid contribution -0.661 0.996 0.353 1.247 sum 9.924 -20.060 -11.836 25.317 Atomic orbital electron populations 1.21645 0.93566 1.02432 1.02195 1.20190 0.96824 0.87586 1.04445 1.22116 0.96930 0.98171 0.86282 1.70383 1.17172 1.03323 1.31338 1.28431 0.96270 0.97517 0.79300 1.84527 1.64403 1.33962 1.24609 1.22770 1.13098 0.85615 0.96043 1.16241 0.77522 0.84575 0.81331 1.90872 1.46294 1.19562 1.81867 1.45440 1.66766 1.17561 1.04922 1.22337 0.97133 1.00564 0.80038 1.23286 0.93642 0.87166 0.98415 1.49748 1.10958 1.06053 1.72617 1.19924 0.91184 0.78992 0.74812 1.90722 1.36537 1.64301 1.47247 1.23214 0.96414 1.01332 1.05681 1.84784 1.14285 1.00185 1.92202 1.22290 0.90389 0.98600 1.55642 0.89388 1.24713 0.95717 0.97381 0.93470 1.69936 1.17833 1.16807 1.47011 0.86736 0.83299 0.81847 0.79981 1.19181 1.19862 1.15921 1.23585 0.94461 0.86774 0.98938 0.92276 0.92623 0.91544 0.89964 0.88154 0.72617 0.75274 0.85095 0.89841 0.88117 0.88489 0.88677 0.91877 0.88120 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.05 -0.46 5.92 -27.89 -0.17 -0.62 16 3 C 0.09 0.91 6.41 -82.46 -0.53 0.38 16 4 N -0.49 -4.83 11.26 -10.88 -0.12 -4.96 16 5 C 0.21 1.52 13.21 52.24 0.69 2.21 16 6 O -0.19 -1.73 10.57 4.42 0.05 -1.68 16 7 C -0.12 -1.22 7.18 -36.84 -0.26 -1.49 16 8 C 0.62 6.25 7.79 -12.83 -0.10 6.15 16 9 O -0.51 -5.82 14.39 5.20 0.07 -5.74 16 10 N -0.70 -6.17 5.40 -54.78 -0.30 -6.47 16 11 C 0.11 0.81 4.61 -67.67 -0.31 0.50 16 12 C 0.10 0.86 8.38 -8.51 -0.07 0.79 16 13 N -0.65 -8.09 3.69 -185.08 -0.68 -8.78 16 14 C 0.56 9.90 8.10 -10.99 -0.09 9.81 16 15 O -0.51 -11.01 16.64 5.56 0.09 -10.92 16 16 C -0.12 -2.24 5.98 36.00 0.22 -2.03 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 22 Si 0.86 21.59 27.74 -169.99 -4.72 16.88 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.53 16 26 C 0.09 0.77 8.26 -8.38 -0.07 0.70 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.26 0.53 8.06 -52.48 -0.42 0.11 16 33 H 0.41 3.73 8.56 -40.82 -0.35 3.38 16 34 H 0.13 0.85 7.45 -51.93 -0.39 0.46 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 38 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -36.68 372.71 -6.62 -43.29 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.30 Total: 0.22 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.11 Total: 3.69 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.33 Total: -45.83 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.21 Total: -18.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.72 Total: 16.88 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.68 -6.62 -43.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530634605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.079 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds