Wall clock time and date at job start Tue Mar 31 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47530 * 2 1 4 4 N 1.33698 * 126.27801 * 270.14316 * 3 2 1 5 5 C 1.30612 * 108.99618 * 180.24970 * 4 3 2 6 6 O 1.33661 * 109.15656 * 359.77065 * 5 4 3 7 7 C 1.35347 * 107.68507 * 359.97438 * 6 5 4 8 8 C 1.46717 * 126.64449 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00252 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00225 * 0.03235 * 8 7 6 11 11 C 1.46497 * 120.00099 * 179.97438 * 10 8 7 12 12 C 1.53501 * 114.20671 * 155.00122 * 11 10 8 13 13 N 1.47065 * 87.98741 * 87.71545 * 12 11 10 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31634 * 120.00298 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99861 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99884 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99830 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99545 * 22 20 18 26 26 C 1.47067 * 87.88381 * 27.34024 * 13 12 11 27 27 H 1.09002 * 109.46689 * 299.99792 * 1 2 3 28 28 H 1.08997 * 109.47102 * 59.99480 * 1 2 3 29 29 H 1.08998 * 109.47456 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46689 * 240.00208 * 2 1 3 31 31 H 1.08997 * 109.47102 * 120.00520 * 2 1 3 32 32 H 1.08004 * 125.42423 * 179.73943 * 5 4 3 33 33 H 0.97002 * 119.99788 * 359.97438 * 10 8 7 34 34 H 1.09000 * 113.28654 * 21.92894 * 11 10 8 35 35 H 1.09001 * 113.46643 * 332.93246 * 12 11 10 36 36 H 1.08996 * 113.46488 * 202.49706 * 12 11 10 37 37 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 38 38 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 39 39 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 40 40 H 1.09010 * 113.46411 * 87.43777 * 26 13 12 41 41 H 1.08997 * 113.47100 * 217.87349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2936 2.1675 -1.0778 5 6 2.7154 3.3411 -0.6898 6 8 2.7318 3.3817 0.6461 7 6 2.3009 2.1814 1.0992 8 6 2.1572 1.7750 2.5017 9 8 1.7568 0.6586 2.7737 10 7 2.4687 2.6382 3.4887 11 6 2.3247 2.2326 4.8891 12 6 3.2303 2.9996 5.8628 13 7 2.1699 4.0130 5.9692 14 6 2.1115 5.3313 6.2434 15 8 3.1292 5.9473 6.4792 16 6 0.7815 6.0397 6.2579 17 16 1.0331 7.7874 6.6557 18 6 -0.6339 8.3558 6.6051 19 1 -1.4329 7.6661 6.3766 20 6 -0.9210 9.6886 6.8652 21 7 -2.1663 10.1134 6.8269 22 14 0.4602 10.8800 7.2682 23 1 0.9680 11.4918 6.0140 24 1 -0.0517 11.9457 8.1668 25 1 1.5624 10.1497 7.9442 26 6 1.2007 2.9536 5.6512 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0054 4.1499 -1.3442 33 1 2.7882 3.5281 3.2719 34 1 2.3337 1.1515 5.0277 35 1 4.1442 3.3743 5.4019 36 1 3.4158 2.4658 6.7948 37 1 0.1361 5.5855 7.0097 38 1 0.3133 5.9536 5.2774 39 1 -2.3668 11.0449 7.0083 40 1 0.8512 2.4077 6.5277 41 1 0.3855 3.2892 5.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530634605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:16 Heat of formation + Delta-G solvation = -35.825490 kcal Electronic energy + Delta-G solvation = -26187.047701 eV Core-core repulsion = 22195.504182 eV Total energy + Delta-G solvation = -3991.543519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.52979 -41.84370 -40.34723 -38.90679 -36.83021 -34.87286 -34.70448 -33.98408 -32.04879 -30.80886 -29.11009 -27.88288 -26.99833 -25.86100 -24.67288 -23.34207 -22.21009 -21.68133 -20.46535 -19.57543 -19.45279 -18.12889 -17.97402 -17.71720 -17.32987 -17.20027 -16.81374 -16.74774 -15.96425 -15.90741 -15.69433 -15.55469 -15.07367 -14.93433 -14.74826 -14.39981 -14.29499 -13.78213 -13.72221 -13.58005 -13.40100 -13.13926 -13.03799 -12.65902 -12.52457 -12.22676 -12.15395 -12.09948 -11.98304 -11.89084 -11.31523 -11.19911 -11.04252 -10.59408 -10.44224 -10.01483 -9.87440 -9.04571 -8.54515 -6.26460 -0.30731 0.90927 1.29444 1.33961 1.35988 1.39374 1.46917 1.50983 1.85686 1.91500 1.97320 2.22426 2.62652 2.83658 3.07386 3.18242 3.44625 3.57989 3.61793 3.81662 4.08164 4.23153 4.27585 4.30800 4.36992 4.39410 4.44832 4.45845 4.57107 4.59772 4.65367 4.77291 4.79381 5.00346 5.07933 5.18607 5.25328 5.34406 5.67464 6.07927 6.10009 6.47552 6.50803 6.80121 6.90192 6.99609 8.58063 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002495 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.267553 B =11218.399802 C =12004.127714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 C 0.081 3.919 4 N -0.522 5.522 5 C 0.226 3.774 6 O -0.197 6.197 7 C -0.142 4.142 8 C 0.619 3.381 9 O -0.525 6.525 10 N -0.695 5.695 11 C 0.118 3.882 12 C 0.101 3.899 13 N -0.652 5.652 14 C 0.564 3.436 15 O -0.561 6.561 16 C -0.103 4.103 17 S -0.170 6.170 18 C -0.530 4.530 19 H 0.060 0.940 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.261 1.261 24 H -0.258 1.258 25 H -0.236 1.236 26 C 0.084 3.916 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.303 0.697 33 H 0.410 0.590 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.278 0.722 40 H 0.132 0.868 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.741 -22.732 -12.542 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C -0.043 4.043 4 N -0.251 5.251 5 C 0.002 3.998 6 O -0.083 6.083 7 C -0.197 4.197 8 C 0.406 3.594 9 O -0.404 6.404 10 N -0.345 5.345 11 C 0.012 3.988 12 C -0.021 4.021 13 N -0.389 5.389 14 C 0.353 3.647 15 O -0.440 6.440 16 C -0.253 4.253 17 S 0.057 5.943 18 C -0.678 4.678 19 H 0.078 0.922 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.182 1.182 25 H -0.160 1.160 26 C -0.039 4.039 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.318 0.682 33 H 0.246 0.754 34 H 0.172 0.828 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.757 -22.372 -12.507 28.198 hybrid contribution -1.064 1.202 0.321 1.637 sum 10.693 -21.170 -12.186 26.664 Atomic orbital electron populations 1.21601 0.93279 1.03196 1.01224 1.20217 0.96995 0.87128 1.04633 1.22398 0.96606 0.98757 0.86559 1.70401 1.18704 1.04450 1.31548 1.29529 0.93582 0.97703 0.78977 1.84532 1.64624 1.33635 1.25513 1.22785 1.14499 0.86181 0.96197 1.16247 0.77232 0.84423 0.81545 1.90854 1.47193 1.20157 1.82180 1.45481 1.66359 1.17316 1.05314 1.22360 0.95935 1.01423 0.79041 1.23614 0.92741 0.85718 1.00064 1.49690 1.14042 1.05117 1.70017 1.19409 0.89457 0.80695 0.75187 1.90699 1.37346 1.65904 1.50043 1.23160 0.98437 0.97348 1.06390 1.84663 1.11775 1.05282 1.92622 1.22431 0.91652 0.98534 1.55154 0.92193 1.25582 0.97965 0.99089 0.93347 1.70015 1.19667 1.17678 1.48106 0.85858 0.80378 0.79899 0.80189 1.18551 1.18233 1.15999 1.23952 0.94161 0.85478 1.00291 0.93723 0.92973 0.89941 0.89056 0.88583 0.68220 0.75423 0.82832 0.90189 0.85063 0.87373 0.87757 0.91281 0.84999 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.05 -0.87 5.92 29.85 0.18 -0.69 16 3 C 0.08 1.59 6.41 41.83 0.27 1.86 16 4 N -0.52 -9.65 11.26 -303.13 -3.41 -13.07 16 5 C 0.23 2.87 13.21 130.42 1.72 4.59 16 6 O -0.20 -3.36 10.57 -7.10 -0.08 -3.43 16 7 C -0.14 -2.78 7.18 24.04 0.17 -2.61 16 8 C 0.62 11.88 7.79 86.46 0.67 12.55 16 9 O -0.53 -11.39 14.39 -4.30 -0.06 -11.45 16 10 N -0.70 -11.19 5.40 -445.44 -2.41 -13.60 16 11 C 0.12 1.48 4.61 45.55 0.21 1.69 16 12 C 0.10 1.46 8.38 83.18 0.70 2.16 16 13 N -0.65 -14.70 3.69 -857.85 -3.16 -17.87 16 14 C 0.56 19.29 8.10 87.66 0.71 20.00 16 15 O -0.56 -23.83 16.64 -3.02 -0.05 -23.88 16 16 C -0.10 -3.92 5.98 71.24 0.43 -3.49 16 17 S -0.17 -8.57 18.55 -56.49 -1.05 -9.62 16 18 C -0.53 -30.87 10.04 67.95 0.68 -30.19 16 19 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 20 C 0.05 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -55.75 13.97 21.65 0.30 -55.44 16 22 Si 0.92 44.67 27.74 68.60 1.90 46.57 16 23 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.24 -11.49 6.74 99.48 0.67 -10.82 16 26 C 0.08 1.24 8.26 83.26 0.69 1.93 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.68 6.47 -2.39 -0.02 1.66 16 32 H 0.30 0.32 8.06 -2.91 -0.02 0.29 16 33 H 0.41 6.93 8.56 -92.71 -0.79 6.14 16 34 H 0.15 1.41 7.45 -2.39 -0.02 1.40 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 36 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 38 H 0.10 3.76 8.14 -2.40 -0.02 3.74 16 39 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -81.24 372.71 -0.16 -81.40 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.25 Total: 10.86 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 7.60 Total: 9.53 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -8.68 Total: -99.97 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.19 Total: -38.77 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.62 kcal Total: -81.24 -0.16 -81.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530634605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.576 kcal (2) G-P(sol) polarization free energy of solvation -81.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds