Wall clock time and date at job start Tue Mar 31 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34261 * 126.52787 * 2 1 4 4 C 1.34047 * 108.22841 * 180.22809 * 3 2 1 5 5 N 1.29937 * 109.24365 * 359.77271 * 4 3 2 6 6 C 1.36070 * 108.47771 * 359.97438 * 5 4 3 7 7 C 1.47419 * 126.44715 * 179.97438 * 6 5 4 8 8 O 1.21614 * 119.99346 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00040 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99611 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.46831 * 174.96827 * 10 9 7 12 12 N 1.46495 * 115.54715 * 85.77478 * 11 10 9 13 13 C 1.34779 * 120.00375 * 65.40694 * 12 11 10 14 14 O 1.21283 * 119.99626 * 354.97760 * 13 12 11 15 15 C 1.50700 * 120.00262 * 174.97499 * 13 12 11 16 16 S 1.81006 * 109.46951 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99846 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99666 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00450 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46982 * 59.99762 * 21 19 17 23 23 H 1.48491 * 109.47305 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46901 * 299.99969 * 21 19 17 25 25 C 1.52993 * 117.49722 * 231.44326 * 11 10 9 26 26 C 1.52997 * 117.49928 * 300.10289 * 11 10 9 27 27 H 1.09000 * 109.46844 * 270.16542 * 1 2 3 28 28 H 1.08994 * 109.47054 * 30.16273 * 1 2 3 29 29 H 1.09000 * 109.47157 * 150.16316 * 1 2 3 30 30 H 1.08002 * 125.37806 * 179.72970 * 4 3 2 31 31 H 0.96999 * 120.00486 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47545 * 54.97056 * 10 9 7 33 33 H 1.08996 * 109.46839 * 294.96726 * 10 9 7 34 34 H 0.97002 * 119.99938 * 245.40447 * 12 11 10 35 35 H 1.08999 * 109.47302 * 300.00003 * 15 13 12 36 36 H 1.08998 * 109.46945 * 60.00407 * 15 13 12 37 37 H 0.97004 * 119.99765 * 180.02562 * 20 19 17 38 38 H 1.09005 * 117.49813 * 215.00448 * 25 11 10 39 39 H 1.08997 * 117.50305 * 0.02987 * 25 11 10 40 40 H 1.08999 * 117.49998 * 359.97438 * 26 11 10 41 41 H 1.09000 * 117.49970 * 144.97302 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0051 5 7 3.6002 -0.6412 -0.0033 6 6 2.3170 -1.0937 0.0036 7 6 1.8854 -2.5032 0.0071 8 8 0.7003 -2.7762 0.0129 9 7 2.8041 -3.4893 0.0040 10 6 2.3750 -4.8901 0.0070 11 6 3.5992 -5.7987 -0.1241 12 7 4.2786 -6.1283 1.1312 13 6 3.6469 -6.8656 2.0660 14 8 2.4859 -7.1792 1.9084 15 6 4.3830 -7.3005 3.3070 16 16 3.2730 -8.2689 4.3588 17 6 4.3604 -8.6348 5.6960 18 1 5.3780 -8.2733 5.6789 19 6 3.9096 -9.3884 6.7709 20 7 2.6695 -9.8294 6.7914 21 14 5.0626 -9.7769 8.1883 22 1 5.5289 -8.5107 8.8084 23 1 4.3440 -10.5889 9.2027 24 1 6.2316 -10.5393 7.6807 25 6 3.5688 -6.8720 -1.2139 26 6 4.4648 -5.6415 -1.3758 27 1 -0.3633 0.0030 1.0277 28 1 -0.3633 0.8885 -0.5163 29 1 -0.3633 -0.8914 -0.5113 30 1 4.4490 1.2977 -0.0105 31 1 3.7493 -3.2716 -0.0010 32 1 1.7010 -5.0655 -0.8315 33 1 1.8579 -5.1097 0.9410 34 1 5.1831 -5.8159 1.2897 35 1 5.2409 -7.9111 3.0254 36 1 4.7261 -6.4215 3.8526 37 1 2.3544 -10.3557 7.5428 38 1 4.0544 -7.8235 -0.9969 39 1 2.6771 -6.9306 -1.8379 40 1 4.1620 -4.8912 -2.1062 41 1 5.5399 -5.7830 -1.2652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535154572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:20 Heat of formation + Delta-G solvation = -22.610186 kcal Electronic energy + Delta-G solvation = -25971.618867 eV Core-core repulsion = 21980.648406 eV Total energy + Delta-G solvation = -3990.970460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.79839 -40.16546 -39.22193 -37.33651 -35.22703 -34.27865 -32.75173 -32.72150 -32.42485 -29.09736 -28.41165 -26.80138 -25.48366 -23.99479 -22.87716 -22.23752 -21.36712 -20.68477 -19.69338 -18.51336 -17.85530 -17.26741 -16.76337 -16.44110 -16.37332 -15.83160 -15.18452 -15.07594 -14.96984 -14.80338 -14.53916 -14.24266 -13.97637 -13.58221 -13.40784 -13.28831 -12.87557 -12.80706 -12.75880 -12.44457 -11.98700 -11.75436 -11.69710 -11.18535 -11.05427 -11.04538 -11.02128 -10.78811 -10.62779 -10.21651 -9.82718 -9.49042 -9.32149 -9.06803 -9.04667 -8.94452 -8.24192 -6.49914 -6.21362 -3.92094 0.76348 1.70099 2.18448 2.81428 2.91307 3.03782 3.09069 3.23490 3.26113 3.29370 3.54034 3.63853 3.73818 4.20466 4.27099 4.34443 4.49540 4.64592 4.74962 4.81961 5.04993 5.08565 5.13461 5.13659 5.36391 5.37191 5.47371 5.48842 5.66604 5.68521 5.72283 5.74190 5.86675 5.90118 5.95075 6.12421 6.23289 6.63225 7.00112 7.37509 7.59142 7.65489 7.98587 8.34982 8.58725 9.23712 10.85969 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.002327 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.408575 B =12031.990600 C =12905.818177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 O -0.201 6.201 4 C 0.174 3.826 5 N -0.463 5.463 6 C -0.079 4.079 7 C 0.601 3.399 8 O -0.532 6.532 9 N -0.707 5.707 10 C 0.149 3.851 11 C 0.089 3.911 12 N -0.709 5.709 13 C 0.535 3.465 14 O -0.506 6.506 15 C -0.153 4.153 16 S -0.057 6.057 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.157 4.157 26 C -0.169 4.169 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.255 0.745 31 H 0.408 0.592 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 20.840 -19.020 28.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 O -0.087 6.087 4 C -0.055 4.055 5 N -0.192 5.192 6 C -0.199 4.199 7 C 0.386 3.614 8 O -0.409 6.409 9 N -0.358 5.358 10 C 0.025 3.975 11 C 0.001 3.999 12 N -0.364 5.364 13 C 0.321 3.679 14 O -0.378 6.378 15 C -0.304 4.304 16 S 0.169 5.831 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.196 4.196 26 C -0.207 4.207 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.271 0.729 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.660 19.592 -19.156 27.452 hybrid contribution 2.829 0.870 1.295 3.231 sum 4.490 20.463 -17.861 27.530 Atomic orbital electron populations 1.20636 0.82452 1.05452 1.04976 1.23806 0.95285 0.83298 0.98669 1.84386 1.18597 1.36291 1.69420 1.28001 0.85294 0.91196 1.00989 1.70721 1.21721 1.10220 1.16545 1.21482 0.88869 0.95582 1.13925 1.16669 0.85502 0.82524 0.76684 1.90815 1.16192 1.83202 1.50718 1.45762 1.10188 1.05792 1.74022 1.21156 0.94155 0.77590 1.04567 1.20618 0.96334 1.01464 0.81525 1.45431 1.18432 1.56173 1.16369 1.20360 0.87190 0.76765 0.83558 1.90709 1.16154 1.53735 1.77247 1.23536 1.04570 1.04767 0.97502 1.85418 1.15460 1.64526 1.17650 1.22825 0.99682 1.39655 1.06336 0.91003 1.24991 0.95632 0.94951 0.97997 1.70010 1.15086 1.33897 1.31261 0.86225 0.80129 0.78502 0.80650 1.19955 1.20798 1.19938 1.23370 1.02022 0.94192 0.99994 1.23325 0.98235 1.01391 0.97722 0.88747 0.90071 0.86834 0.72925 0.75694 0.89987 0.89000 0.76443 0.89185 0.89287 0.92110 0.87790 0.87738 0.87684 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.87 36.01 0.36 -0.24 16 2 C 0.05 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.20 -1.65 10.73 6.51 0.07 -1.58 16 4 C 0.17 1.17 13.19 51.96 0.69 1.86 16 5 N -0.46 -4.58 11.06 -11.48 -0.13 -4.71 16 6 C -0.08 -0.90 6.99 -83.02 -0.58 -1.48 16 7 C 0.60 7.96 7.81 -12.52 -0.10 7.86 16 8 O -0.53 -8.29 14.80 5.27 0.08 -8.21 16 9 N -0.71 -8.33 5.44 -61.38 -0.33 -8.66 16 10 C 0.15 1.96 5.63 -4.03 -0.02 1.94 16 11 C 0.09 1.03 1.79 -131.82 -0.24 0.79 16 12 N -0.71 -9.18 5.45 -47.61 -0.26 -9.44 16 13 C 0.53 9.77 7.66 -10.98 -0.08 9.68 16 14 O -0.51 -11.20 14.64 5.56 0.08 -11.12 16 15 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 16 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 17 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.16 -1.63 10.11 -26.70 -0.27 -1.90 16 26 C -0.17 -1.37 9.94 -26.70 -0.27 -1.63 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.11 1.01 6.48 -51.93 -0.34 0.67 16 30 H 0.26 0.35 8.06 -52.49 -0.42 -0.08 16 31 H 0.41 4.17 8.10 -40.82 -0.33 3.84 16 32 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 33 H 0.09 1.57 6.83 -51.93 -0.35 1.21 16 34 H 0.40 4.01 8.83 -40.82 -0.36 3.65 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -37.32 375.74 -6.82 -44.14 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.14 Total: 5.56 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.36 Total: 1.21 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.01 Total: -48.35 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.23 Total: -20.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.32 -6.82 -44.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535154572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.530 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds