Wall clock time and date at job start Tue Mar 31 2020 22:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34261 * 126.52787 * 2 1 4 4 C 1.34047 * 108.22841 * 180.22809 * 3 2 1 5 5 N 1.29937 * 109.24365 * 359.77271 * 4 3 2 6 6 C 1.36070 * 108.47771 * 359.97438 * 5 4 3 7 7 C 1.47419 * 126.44715 * 179.97438 * 6 5 4 8 8 O 1.21614 * 119.99346 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00040 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99611 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.46831 * 174.96827 * 10 9 7 12 12 N 1.46495 * 115.54715 * 85.77478 * 11 10 9 13 13 C 1.34779 * 120.00375 * 65.40694 * 12 11 10 14 14 O 1.21283 * 119.99626 * 354.97760 * 13 12 11 15 15 C 1.50700 * 120.00262 * 174.97499 * 13 12 11 16 16 S 1.81006 * 109.46951 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99846 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99666 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00450 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46982 * 59.99762 * 21 19 17 23 23 H 1.48491 * 109.47305 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46901 * 299.99969 * 21 19 17 25 25 C 1.52993 * 117.49722 * 231.44326 * 11 10 9 26 26 C 1.52997 * 117.49928 * 300.10289 * 11 10 9 27 27 H 1.09000 * 109.46844 * 270.16542 * 1 2 3 28 28 H 1.08994 * 109.47054 * 30.16273 * 1 2 3 29 29 H 1.09000 * 109.47157 * 150.16316 * 1 2 3 30 30 H 1.08002 * 125.37806 * 179.72970 * 4 3 2 31 31 H 0.96999 * 120.00486 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47545 * 54.97056 * 10 9 7 33 33 H 1.08996 * 109.46839 * 294.96726 * 10 9 7 34 34 H 0.97002 * 119.99938 * 245.40447 * 12 11 10 35 35 H 1.08999 * 109.47302 * 300.00003 * 15 13 12 36 36 H 1.08998 * 109.46945 * 60.00407 * 15 13 12 37 37 H 0.97004 * 119.99765 * 180.02562 * 20 19 17 38 38 H 1.09005 * 117.49813 * 215.00448 * 25 11 10 39 39 H 1.08997 * 117.50305 * 0.02987 * 25 11 10 40 40 H 1.08999 * 117.49998 * 359.97438 * 26 11 10 41 41 H 1.09000 * 117.49970 * 144.97302 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0051 5 7 3.6002 -0.6412 -0.0033 6 6 2.3170 -1.0937 0.0036 7 6 1.8854 -2.5032 0.0071 8 8 0.7003 -2.7762 0.0129 9 7 2.8041 -3.4893 0.0040 10 6 2.3750 -4.8901 0.0070 11 6 3.5992 -5.7987 -0.1241 12 7 4.2786 -6.1283 1.1312 13 6 3.6469 -6.8656 2.0660 14 8 2.4859 -7.1792 1.9084 15 6 4.3830 -7.3005 3.3070 16 16 3.2730 -8.2689 4.3588 17 6 4.3604 -8.6348 5.6960 18 1 5.3780 -8.2733 5.6789 19 6 3.9096 -9.3884 6.7709 20 7 2.6695 -9.8294 6.7914 21 14 5.0626 -9.7769 8.1883 22 1 5.5289 -8.5107 8.8084 23 1 4.3440 -10.5889 9.2027 24 1 6.2316 -10.5393 7.6807 25 6 3.5688 -6.8720 -1.2139 26 6 4.4648 -5.6415 -1.3758 27 1 -0.3633 0.0030 1.0277 28 1 -0.3633 0.8885 -0.5163 29 1 -0.3633 -0.8914 -0.5113 30 1 4.4490 1.2977 -0.0105 31 1 3.7493 -3.2716 -0.0010 32 1 1.7010 -5.0655 -0.8315 33 1 1.8579 -5.1097 0.9410 34 1 5.1831 -5.8159 1.2897 35 1 5.2409 -7.9111 3.0254 36 1 4.7261 -6.4215 3.8526 37 1 2.3544 -10.3557 7.5428 38 1 4.0544 -7.8235 -0.9969 39 1 2.6771 -6.9306 -1.8379 40 1 4.1620 -4.8912 -2.1062 41 1 5.5399 -5.7830 -1.2652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535154572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:19 Heat of formation + Delta-G solvation = -54.025494 kcal Electronic energy + Delta-G solvation = -25972.981137 eV Core-core repulsion = 21980.648406 eV Total energy + Delta-G solvation = -3992.332730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.45575 -41.28387 -40.38363 -38.50645 -35.96327 -35.26271 -34.59596 -34.00541 -33.39912 -30.58681 -29.31205 -27.71901 -27.56407 -24.75857 -23.71581 -22.99535 -22.47621 -21.58927 -20.84541 -19.85547 -19.35333 -17.95588 -17.83135 -17.70502 -17.26589 -16.89911 -16.88733 -16.36432 -16.29018 -15.89270 -15.63097 -15.52143 -15.02470 -14.80387 -14.54515 -14.37583 -14.07155 -13.93787 -13.67878 -13.43401 -13.38201 -13.17780 -12.87490 -12.63714 -12.47032 -12.44151 -11.98366 -11.89642 -11.76700 -11.56485 -11.25722 -11.13731 -10.84685 -10.32180 -10.28235 -10.11968 -9.89789 -8.67656 -8.35308 -6.13611 0.01045 1.03159 1.24372 1.43071 1.44872 1.53822 1.54663 1.59046 1.94947 2.12598 2.17755 2.26919 2.76201 2.98651 3.09063 3.28913 3.44879 3.61133 3.71267 3.79566 3.86696 3.97855 4.22888 4.28779 4.37451 4.43480 4.49596 4.54210 4.55331 4.70719 4.78783 4.85319 4.96149 5.05630 5.15558 5.17396 5.25890 5.40406 5.50543 6.18595 6.23189 6.47610 6.55472 7.02042 7.05664 7.24561 8.73665 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.002327 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.408575 B =12031.990600 C =12905.818177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 O -0.199 6.199 4 C 0.197 3.803 5 N -0.490 5.490 6 C -0.107 4.107 7 C 0.594 3.406 8 O -0.566 6.566 9 N -0.695 5.695 10 C 0.158 3.842 11 C 0.063 3.937 12 N -0.683 5.683 13 C 0.536 3.464 14 O -0.553 6.553 15 C -0.128 4.128 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.261 1.261 25 C -0.167 4.167 26 C -0.124 4.124 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.306 0.694 31 H 0.417 0.583 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.271 0.729 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.442 23.019 -19.930 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.012 4.012 3 O -0.086 6.086 4 C -0.032 4.032 5 N -0.219 5.219 6 C -0.225 4.225 7 C 0.381 3.619 8 O -0.446 6.446 9 N -0.346 5.346 10 C 0.034 3.966 11 C -0.025 4.025 12 N -0.337 5.337 13 C 0.322 3.678 14 O -0.429 6.429 15 C -0.280 4.280 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.206 4.206 26 C -0.161 4.161 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.320 0.680 31 H 0.254 0.746 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.114 21.796 -20.104 30.090 hybrid contribution 1.817 0.335 1.454 2.351 sum 6.931 22.131 -18.649 29.759 Atomic orbital electron populations 1.20657 0.81576 1.05908 1.05283 1.24058 0.96055 0.83308 0.97797 1.84424 1.19134 1.35600 1.69398 1.29198 0.85784 0.90842 0.97348 1.70685 1.20874 1.11845 1.18468 1.21300 0.90230 0.94801 1.16180 1.17053 0.85215 0.83657 0.76009 1.90789 1.17569 1.83953 1.52325 1.45651 1.10486 1.05030 1.73459 1.20878 0.94885 0.78728 1.02136 1.20696 0.97414 1.02805 0.81622 1.45071 1.18833 1.53988 1.15794 1.20100 0.86510 0.77245 0.83903 1.90703 1.18085 1.55948 1.78191 1.23364 1.03211 1.04359 0.97040 1.85615 1.19743 1.66826 1.20168 1.23172 0.99986 1.39747 1.06570 0.89890 1.26148 0.97408 0.94521 1.01168 1.70186 1.17423 1.34859 1.32356 0.84999 0.77763 0.78711 0.76495 1.18704 1.20419 1.18507 1.23448 1.03208 0.94553 0.99369 1.23471 0.98899 0.99509 0.94219 0.88457 0.87383 0.88535 0.67961 0.74596 0.89995 0.93597 0.74277 0.87010 0.87542 0.91996 0.88413 0.87357 0.85970 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.87 71.24 0.70 -0.46 16 2 C 0.05 0.84 7.44 25.19 0.19 1.03 16 3 O -0.20 -2.80 10.73 0.37 0.00 -2.80 16 4 C 0.20 2.03 13.19 130.52 1.72 3.76 16 5 N -0.49 -8.78 11.06 -305.15 -3.37 -12.15 16 6 C -0.11 -2.40 6.99 40.41 0.28 -2.12 16 7 C 0.59 16.19 7.81 86.66 0.68 16.87 16 8 O -0.57 -18.73 14.80 -4.08 -0.06 -18.79 16 9 N -0.70 -16.40 5.44 -466.36 -2.54 -18.94 16 10 C 0.16 4.28 5.63 86.38 0.49 4.77 16 11 C 0.06 1.38 1.79 3.60 0.01 1.38 16 12 N -0.68 -16.81 5.45 -422.93 -2.31 -19.11 16 13 C 0.54 19.73 7.66 87.66 0.67 20.40 16 14 O -0.55 -25.63 14.64 -3.04 -0.04 -25.68 16 15 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 16 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 17 C -0.55 -31.46 9.50 67.95 0.65 -30.81 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.69 13.22 21.65 0.29 -56.41 16 21 Si 1.00 43.87 29.55 68.60 2.03 45.89 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.17 -3.24 10.11 30.62 0.31 -2.93 16 26 C -0.12 -1.59 9.94 30.62 0.30 -1.29 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.81 6.48 -2.39 -0.02 1.80 16 30 H 0.31 -0.66 8.06 -2.91 -0.02 -0.68 16 31 H 0.42 8.04 8.10 -92.71 -0.75 7.29 16 32 H 0.08 2.18 7.89 -2.39 -0.02 2.16 16 33 H 0.05 1.69 6.83 -2.39 -0.02 1.67 16 34 H 0.42 7.22 8.83 -92.71 -0.82 6.41 16 35 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 36 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 38 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.11 2.00 8.05 -2.39 -0.02 1.98 16 40 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -86.99 375.74 -0.74 -87.73 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.47 Total: 22.77 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.90 Total: 7.10 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -7.93 Total: -106.61 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.10 Total: -47.27 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -86.99 -0.74 -87.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535154572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.702 kcal (2) G-P(sol) polarization free energy of solvation -86.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds