Wall clock time and date at job start Tue Mar 31 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35320 * 128.04216 * 2 1 4 4 O 1.34015 * 106.67068 * 180.22615 * 3 2 1 5 5 N 1.20908 * 111.84574 * 359.76291 * 4 3 2 6 6 C 1.30985 * 111.44065 * 359.97438 * 5 4 3 7 7 C 1.48330 * 126.93734 * 179.97438 * 6 5 4 8 8 O 1.21496 * 119.99862 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99943 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99611 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.46831 * 174.96827 * 10 9 7 12 12 N 1.46495 * 115.54715 * 85.77478 * 11 10 9 13 13 C 1.34779 * 120.00375 * 65.40694 * 12 11 10 14 14 O 1.21283 * 119.99626 * 354.97760 * 13 12 11 15 15 C 1.50700 * 120.00262 * 174.97499 * 13 12 11 16 16 S 1.81006 * 109.46951 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99846 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99666 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00450 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47294 * 89.99398 * 21 19 17 23 23 H 1.48497 * 109.47047 * 210.00145 * 21 19 17 24 24 H 1.48502 * 109.46965 * 329.99758 * 21 19 17 25 25 C 1.52993 * 117.49722 * 231.44326 * 11 10 9 26 26 C 1.52997 * 117.49928 * 300.10289 * 11 10 9 27 27 H 1.08991 * 109.46750 * 270.15167 * 1 2 3 28 28 H 1.09000 * 109.46795 * 30.15066 * 1 2 3 29 29 H 1.09004 * 109.46582 * 150.14855 * 1 2 3 30 30 H 1.08004 * 126.66219 * 359.96272 * 3 2 1 31 31 H 0.96999 * 120.00486 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.47545 * 54.97056 * 10 9 7 33 33 H 1.08996 * 109.46839 * 294.96726 * 10 9 7 34 34 H 0.97002 * 119.99938 * 245.40447 * 12 11 10 35 35 H 1.08999 * 109.47302 * 300.00003 * 15 13 12 36 36 H 1.08998 * 109.46945 * 60.00407 * 15 13 12 37 37 H 0.97004 * 119.99765 * 180.02562 * 20 19 17 38 38 H 1.09005 * 117.49813 * 215.00448 * 25 11 10 39 39 H 1.08997 * 117.50305 * 0.02987 * 25 11 10 40 40 H 1.08999 * 117.49998 * 359.97438 * 26 11 10 41 41 H 1.09000 * 117.49970 * 144.97302 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5774 -0.0051 5 7 3.5989 -0.6317 -0.0034 6 6 2.3838 -1.1206 0.0035 7 6 1.9993 -2.5532 0.0069 8 8 0.8256 -2.8671 0.0129 9 7 2.9519 -3.5065 0.0034 10 6 2.5721 -4.9215 0.0063 11 6 3.8272 -5.7866 -0.1252 12 7 4.5180 -6.0925 1.1299 13 6 3.9127 -6.8516 2.0647 14 8 2.7634 -7.2056 1.9073 15 6 4.6639 -7.2606 3.3055 16 16 3.5887 -8.2675 4.3573 17 6 4.6885 -8.5953 5.6943 18 1 5.6929 -8.1984 5.6771 19 6 4.2646 -9.3643 6.7691 20 7 3.0407 -9.8484 6.7899 21 14 5.4308 -9.7125 8.1862 22 1 5.2937 -8.6485 9.2130 23 1 5.0982 -11.0281 8.7892 24 1 6.8277 -9.7376 7.6829 25 6 3.8342 -6.8602 -1.2152 26 6 4.6866 -5.5991 -1.3771 27 1 -0.3632 0.0027 1.0276 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3632 -0.8914 -0.5116 30 1 2.0560 2.1075 -0.0006 31 1 3.8890 -3.2559 -0.0017 32 1 1.9045 -5.1202 -0.8321 33 1 2.0632 -5.1591 0.9403 34 1 5.4112 -5.7487 1.2882 35 1 5.5425 -7.8408 3.0236 36 1 4.9762 -6.3702 3.8512 37 1 2.7443 -10.3856 7.5413 38 1 4.3528 -7.7941 -0.9985 39 1 2.9449 -6.9499 -1.8390 40 1 4.3576 -4.8598 -2.1073 41 1 5.7660 -5.7029 -1.2668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535970259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:32 Heat of formation + Delta-G solvation = -11.477624 kcal Electronic energy + Delta-G solvation = -25968.851737 eV Core-core repulsion = 21978.364021 eV Total energy + Delta-G solvation = -3990.487716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.16307 -41.38184 -40.52736 -38.56853 -35.74324 -35.56660 -34.61024 -34.06829 -33.33032 -30.61126 -29.34690 -28.54552 -27.68568 -25.32206 -23.75496 -22.72169 -22.63382 -21.70801 -20.94562 -19.87506 -19.48781 -18.86256 -17.89021 -17.84089 -17.57820 -16.95407 -16.90184 -16.46423 -16.38437 -15.99946 -15.69369 -15.25301 -14.88242 -14.69017 -14.57184 -14.26762 -14.21335 -14.00849 -13.73234 -13.48137 -13.35943 -13.18942 -12.91339 -12.63186 -12.50874 -12.42385 -12.03173 -11.78292 -11.67573 -11.42246 -11.37451 -11.16515 -10.89643 -10.42108 -10.35169 -10.29832 -10.16439 -8.69322 -8.36861 -6.15204 0.01140 0.69083 1.22728 1.40724 1.43625 1.54415 1.55453 1.64098 1.93919 2.09495 2.23654 2.25298 2.66210 2.85576 2.97294 3.26381 3.38889 3.52992 3.71005 3.80390 3.87519 3.93393 4.06116 4.26260 4.36359 4.40084 4.47079 4.51192 4.66677 4.72485 4.75285 4.79949 4.92358 4.92550 5.04441 5.12940 5.32141 5.39368 5.46014 6.15844 6.17452 6.43864 6.81478 7.00712 7.04317 7.20830 8.72371 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002325 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.654258 B =12040.380734 C =12913.461308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.177 4.177 3 C -0.031 4.031 4 O 0.133 5.867 5 N -0.344 5.344 6 C -0.056 4.056 7 C 0.591 3.409 8 O -0.554 6.554 9 N -0.697 5.697 10 C 0.158 3.842 11 C 0.061 3.939 12 N -0.683 5.683 13 C 0.537 3.463 14 O -0.552 6.552 15 C -0.129 4.129 16 S -0.151 6.151 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.257 1.257 25 C -0.165 4.165 26 C -0.125 4.125 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.277 0.723 31 H 0.415 0.585 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 23.983 -19.932 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.182 4.182 3 C -0.111 4.111 4 O 0.055 5.945 5 N -0.043 5.043 6 C -0.214 4.214 7 C 0.376 3.624 8 O -0.431 6.431 9 N -0.349 5.349 10 C 0.033 3.967 11 C -0.027 4.027 12 N -0.338 5.338 13 C 0.323 3.677 14 O -0.429 6.429 15 C -0.280 4.280 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.181 1.181 25 C -0.204 4.204 26 C -0.162 4.162 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.293 0.707 31 H 0.252 0.748 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.739 22.375 -20.113 30.317 hybrid contribution 1.378 0.024 1.467 2.012 sum 5.117 22.399 -18.646 29.590 Atomic orbital electron populations 1.20219 0.86011 1.04162 1.03295 1.21695 0.99929 0.90207 1.06382 1.26672 0.80313 1.02649 1.01503 1.84741 1.30735 1.14318 1.64690 1.74151 1.21188 0.92718 1.16216 1.23391 0.90929 0.96483 1.10593 1.17229 0.85290 0.83479 0.76439 1.90788 1.18846 1.82392 1.51037 1.45759 1.10113 1.05595 1.73417 1.20926 0.95201 0.78145 1.02395 1.20695 0.96635 1.03673 0.81700 1.45080 1.20275 1.52612 1.15800 1.20107 0.86394 0.77336 0.83899 1.90705 1.18711 1.55269 1.78178 1.23364 1.03206 1.04397 0.97026 1.85616 1.21376 1.65163 1.20191 1.23199 1.01024 1.38627 1.06549 0.89903 1.26151 0.97535 0.94406 1.01172 1.70190 1.18665 1.33684 1.32272 0.84942 0.78198 0.77817 0.76954 1.19364 1.20243 1.18086 1.23452 1.03386 0.94353 0.99177 1.23489 0.99291 0.99312 0.94133 0.90770 0.87564 0.92204 0.70726 0.74767 0.89742 0.93355 0.74260 0.86996 0.87539 0.91984 0.88312 0.87270 0.85953 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.01 71.24 0.71 -0.45 16 2 C -0.18 -2.87 6.34 -19.53 -0.12 -3.00 16 3 C -0.03 -0.26 12.24 67.15 0.82 0.56 16 4 O 0.13 1.82 11.18 71.88 0.80 2.62 16 5 N -0.34 -6.64 11.84 -49.50 -0.59 -7.22 16 6 C -0.06 -1.25 7.19 42.96 0.31 -0.94 16 7 C 0.59 16.18 7.85 86.93 0.68 16.86 16 8 O -0.55 -18.84 15.34 -3.70 -0.06 -18.90 16 9 N -0.70 -16.29 5.44 -465.49 -2.53 -18.82 16 10 C 0.16 4.23 5.63 86.38 0.49 4.72 16 11 C 0.06 1.33 1.79 3.60 0.01 1.34 16 12 N -0.68 -16.74 5.45 -422.93 -2.31 -19.05 16 13 C 0.54 19.68 7.66 87.66 0.67 20.35 16 14 O -0.55 -25.53 14.64 -3.04 -0.04 -25.57 16 15 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 16 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 17 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.69 5.49 84.86 0.47 1.16 16 20 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 21 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 C -0.16 -3.16 10.11 30.62 0.31 -2.86 16 26 C -0.12 -1.59 9.94 30.62 0.30 -1.28 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 1.21 6.89 -2.39 -0.02 1.20 16 30 H 0.28 -1.00 8.06 -2.91 -0.02 -1.02 16 31 H 0.42 7.79 8.13 -92.71 -0.75 7.04 16 32 H 0.08 2.22 7.89 -2.39 -0.02 2.21 16 33 H 0.05 1.76 6.83 -2.39 -0.02 1.75 16 34 H 0.42 7.19 8.83 -92.71 -0.82 6.37 16 35 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 36 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.11 1.99 8.05 -2.39 -0.02 1.97 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -86.64 376.27 1.68 -84.96 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.48 Total: 20.97 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.73 Total: 1.02 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -5.14 Total: -101.46 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: 0.70 Total: -41.85 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -86.64 1.68 -84.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535970259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.485 kcal (2) G-P(sol) polarization free energy of solvation -86.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds