Wall clock time and date at job start Tue Mar 31 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34254 * 126.52403 * 2 1 4 4 C 1.34042 * 108.22855 * 180.02562 * 3 2 1 5 5 N 1.29942 * 109.24413 * 359.74700 * 4 3 2 6 6 C 1.36066 * 108.47038 * 0.40477 * 5 4 3 7 7 C 1.47428 * 126.44391 * 179.85960 * 6 5 4 8 8 O 1.21608 * 119.99526 * 179.68597 * 7 6 5 9 9 N 1.34774 * 120.00007 * 359.69295 * 7 6 5 10 10 C 1.47423 * 125.64935 * 0.02562 * 9 7 6 11 11 C 1.54909 * 104.83351 * 155.83866 * 10 9 7 12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9 13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10 14 14 N 1.46497 * 110.72259 * 206.15767 * 12 11 10 15 15 C 1.34772 * 119.99998 * 204.99892 * 14 12 11 16 16 O 1.21285 * 119.99933 * 359.97438 * 15 14 12 17 17 C 1.50694 * 120.00258 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47488 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00289 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99978 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00484 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00447 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99377 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46985 * 90.00078 * 23 21 19 25 25 H 1.48507 * 109.46557 * 209.99727 * 23 21 19 26 26 H 1.48495 * 109.47244 * 329.99768 * 23 21 19 27 27 C 1.47016 * 125.64624 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.46841 * 269.95532 * 1 2 3 29 29 H 1.08989 * 109.46980 * 29.95715 * 1 2 3 30 30 H 1.08997 * 109.46491 * 149.95974 * 1 2 3 31 31 H 1.08002 * 125.38207 * 180.02562 * 4 3 2 32 32 H 1.09000 * 110.36544 * 37.00287 * 10 9 7 33 33 H 1.09002 * 110.37016 * 274.68213 * 10 9 7 34 34 H 1.09002 * 111.00594 * 155.08642 * 11 10 9 35 35 H 1.09002 * 111.00655 * 278.89906 * 11 10 9 36 36 H 0.96994 * 120.00175 * 24.99235 * 14 12 11 37 37 H 1.08999 * 109.47463 * 300.00621 * 17 15 14 38 38 H 1.08998 * 109.46985 * 60.00108 * 17 15 14 39 39 H 0.96998 * 120.00096 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.88531 * 300.50046 * 27 9 7 41 41 H 1.09000 * 109.88853 * 61.67215 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 7 3.6003 -0.6411 0.0045 6 6 2.3171 -1.0936 -0.0006 7 6 1.8854 -2.5032 -0.0004 8 8 0.7004 -2.7762 0.0004 9 7 2.8042 -3.4893 -0.0011 10 6 4.2664 -3.3013 -0.0014 11 6 4.8341 -4.6061 0.6108 12 6 3.8685 -5.6711 0.0271 13 1 4.1725 -5.9566 -0.9799 14 7 3.8007 -6.8442 0.9019 15 6 3.4592 -8.0449 0.3938 16 8 3.2075 -8.1540 -0.7876 17 6 3.3900 -9.2518 1.2934 18 16 2.9075 -10.7012 0.3226 19 6 2.9042 -11.9289 1.5866 20 1 3.1557 -11.6594 2.6017 21 6 2.5774 -13.2421 1.2778 22 7 2.5745 -14.1590 2.2221 23 14 2.1417 -13.7079 -0.4779 24 1 3.3741 -14.1052 -1.2049 25 1 1.1860 -14.8445 -0.4657 26 1 1.5187 -12.5445 -1.1587 27 6 2.5141 -4.9306 -0.0005 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3632 -0.8896 -0.5145 31 1 4.4489 1.2978 -0.0003 32 1 4.5387 -2.4437 0.6138 33 1 4.6318 -3.1698 -1.0199 34 1 5.8569 -4.7814 0.2773 35 1 4.7789 -4.5833 1.6992 36 1 4.0017 -6.7569 1.8468 37 1 4.3669 -9.4251 1.7448 38 1 2.6532 -9.0786 2.0777 39 1 2.3465 -15.0768 2.0063 40 1 1.9318 -5.1912 0.8833 41 1 1.9633 -5.1983 -0.9021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576131552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:10 Heat of formation + Delta-G solvation = -37.641403 kcal Electronic energy + Delta-G solvation = -25944.703882 eV Core-core repulsion = 21953.081619 eV Total energy + Delta-G solvation = -3991.622263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.91959 -40.41541 -39.24197 -37.55012 -35.36682 -34.19021 -32.85197 -32.44042 -31.25223 -29.67009 -28.61400 -27.45303 -25.62121 -24.81456 -23.21429 -22.41805 -21.36700 -20.59018 -20.00900 -18.25206 -17.76540 -17.42959 -17.02301 -16.76899 -16.24601 -15.91457 -15.42140 -15.15411 -15.03348 -14.93655 -14.45145 -13.99111 -13.80942 -13.63532 -13.54713 -13.36299 -13.13132 -12.88928 -12.79755 -12.66890 -12.34321 -12.20316 -11.85062 -11.73273 -11.33976 -11.26603 -11.00806 -10.88870 -10.60317 -10.41128 -9.86144 -9.59648 -9.44364 -9.15245 -8.99916 -8.87698 -8.50938 -6.92367 -6.28952 -4.00912 0.64713 1.58417 2.06642 2.48878 2.77848 2.89698 2.93749 3.28684 3.33799 3.50976 3.52901 3.64349 4.08178 4.17377 4.22415 4.33249 4.50344 4.71501 4.72165 4.76445 4.91222 4.95194 5.02400 5.06797 5.10149 5.27011 5.34775 5.38950 5.47056 5.56929 5.61046 5.67667 5.72154 5.75086 5.83229 5.99802 6.01555 6.45575 6.92653 7.15839 7.51830 7.78709 7.94019 8.40924 8.41773 9.17168 10.80211 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.001937 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.699471 B =14450.815175 C =14880.413975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 O -0.200 6.200 4 C 0.174 3.826 5 N -0.461 5.461 6 C -0.074 4.074 7 C 0.615 3.385 8 O -0.532 6.532 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.142 4.142 12 C 0.138 3.862 13 H 0.109 0.891 14 N -0.727 5.727 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.095 3.905 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.255 0.745 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.402 0.598 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.077 0.923 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 33.632 -2.202 33.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.009 4.009 3 O -0.086 6.086 4 C -0.055 4.055 5 N -0.190 5.190 6 C -0.194 4.194 7 C 0.403 3.597 8 O -0.409 6.409 9 N -0.334 5.334 10 C -0.018 4.018 11 C -0.181 4.181 12 C 0.031 3.969 13 H 0.127 0.873 14 N -0.382 5.382 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.028 4.028 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.271 0.729 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.237 0.763 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.404 32.774 -4.122 33.207 hybrid contribution -0.025 0.207 1.289 1.306 sum 3.379 32.980 -2.833 33.274 Atomic orbital electron populations 1.20639 0.82446 1.05581 1.04888 1.23778 0.95268 0.83240 0.98660 1.84388 1.18615 1.36252 1.69338 1.28084 0.85284 0.91339 1.00774 1.70813 1.21551 1.09881 1.16792 1.21338 0.88900 0.95202 1.13954 1.16299 0.84529 0.81983 0.76898 1.90818 1.15798 1.82942 1.51364 1.48097 1.07340 1.05993 1.71996 1.22524 0.78663 0.98523 1.02072 1.23157 0.99764 0.93651 1.01502 1.21871 0.93482 0.84969 0.96562 0.87309 1.45916 1.72558 1.07370 1.12308 1.20363 0.75360 0.83576 0.88820 1.90713 1.46868 1.84894 1.16433 1.23280 1.05816 0.96375 1.02038 1.84805 1.90087 1.00408 1.16162 1.22311 1.54342 0.94240 0.96026 0.89364 1.24716 0.93595 0.95198 0.97832 1.69934 1.46539 1.02371 1.32800 0.86734 0.79839 0.80489 0.84784 1.19210 1.19941 1.15901 1.22493 0.98177 0.78568 1.03579 0.88809 0.89965 0.86842 0.72908 0.87910 0.90924 0.88798 0.89929 0.76278 0.88361 0.88336 0.91934 0.90494 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 9.88 36.01 0.36 -0.16 16 2 C 0.05 0.40 7.44 -35.08 -0.26 0.14 16 3 O -0.20 -1.39 10.73 6.54 0.07 -1.32 16 4 C 0.17 0.91 13.19 51.96 0.69 1.60 16 5 N -0.46 -3.84 8.44 -11.48 -0.10 -3.94 16 6 C -0.07 -0.76 6.81 -83.02 -0.57 -1.33 16 7 C 0.61 7.67 7.85 -12.52 -0.10 7.57 16 8 O -0.53 -7.88 15.13 5.27 0.08 -7.80 16 9 N -0.60 -6.73 3.33 -171.75 -0.57 -7.31 16 10 C 0.11 0.88 6.15 -2.53 -0.02 0.86 16 11 C -0.14 -1.05 6.71 -24.58 -0.16 -1.21 16 12 C 0.14 1.47 3.32 -66.07 -0.22 1.25 16 13 H 0.11 1.32 7.55 -51.93 -0.39 0.93 16 14 N -0.73 -8.64 5.10 -52.00 -0.27 -8.90 16 15 C 0.53 9.05 7.85 -10.99 -0.09 8.97 16 16 O -0.52 -10.74 15.51 5.55 0.09 -10.65 16 17 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 18 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 19 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 23 Si 0.86 21.80 27.74 -169.99 -4.72 17.09 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 27 C 0.10 1.15 6.62 -3.04 -0.02 1.13 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.36 8.14 -51.94 -0.42 -0.07 16 30 H 0.11 0.93 6.48 -51.93 -0.34 0.59 16 31 H 0.26 -0.01 8.06 -52.49 -0.42 -0.44 16 32 H 0.10 0.83 6.14 -51.93 -0.32 0.51 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.54 8.01 -51.93 -0.42 0.13 16 36 H 0.40 3.63 8.56 -40.82 -0.35 3.28 16 37 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -37.21 363.11 -6.30 -43.52 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.19 Total: 0.39 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 0.05 Total: 4.75 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.16 Total: -45.91 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.24 Total: -19.77 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.21 -6.30 -43.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576131552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.874 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds