Wall clock time and date at job start Tue Mar 31 2020 22:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34254 * 126.52403 * 2 1 4 4 C 1.34042 * 108.22855 * 180.02562 * 3 2 1 5 5 N 1.29942 * 109.24413 * 359.74700 * 4 3 2 6 6 C 1.36066 * 108.47038 * 0.40477 * 5 4 3 7 7 C 1.47428 * 126.44391 * 179.85960 * 6 5 4 8 8 O 1.21608 * 119.99526 * 179.68597 * 7 6 5 9 9 N 1.34774 * 120.00007 * 359.69295 * 7 6 5 10 10 C 1.47423 * 125.64935 * 0.02562 * 9 7 6 11 11 C 1.54909 * 104.83351 * 155.83866 * 10 9 7 12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9 13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10 14 14 N 1.46497 * 110.72259 * 206.15767 * 12 11 10 15 15 C 1.34772 * 119.99998 * 204.99892 * 14 12 11 16 16 O 1.21285 * 119.99933 * 359.97438 * 15 14 12 17 17 C 1.50694 * 120.00258 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47488 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00289 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99978 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00484 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00447 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99377 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46985 * 90.00078 * 23 21 19 25 25 H 1.48507 * 109.46557 * 209.99727 * 23 21 19 26 26 H 1.48495 * 109.47244 * 329.99768 * 23 21 19 27 27 C 1.47016 * 125.64624 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.46841 * 269.95532 * 1 2 3 29 29 H 1.08989 * 109.46980 * 29.95715 * 1 2 3 30 30 H 1.08997 * 109.46491 * 149.95974 * 1 2 3 31 31 H 1.08002 * 125.38207 * 180.02562 * 4 3 2 32 32 H 1.09000 * 110.36544 * 37.00287 * 10 9 7 33 33 H 1.09002 * 110.37016 * 274.68213 * 10 9 7 34 34 H 1.09002 * 111.00594 * 155.08642 * 11 10 9 35 35 H 1.09002 * 111.00655 * 278.89906 * 11 10 9 36 36 H 0.96994 * 120.00175 * 24.99235 * 14 12 11 37 37 H 1.08999 * 109.47463 * 300.00621 * 17 15 14 38 38 H 1.08998 * 109.46985 * 60.00108 * 17 15 14 39 39 H 0.96998 * 120.00096 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.88531 * 300.50046 * 27 9 7 41 41 H 1.09000 * 109.88853 * 61.67215 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 7 3.6003 -0.6411 0.0045 6 6 2.3171 -1.0936 -0.0006 7 6 1.8854 -2.5032 -0.0004 8 8 0.7004 -2.7762 0.0004 9 7 2.8042 -3.4893 -0.0011 10 6 4.2664 -3.3013 -0.0014 11 6 4.8341 -4.6061 0.6108 12 6 3.8685 -5.6711 0.0271 13 1 4.1725 -5.9566 -0.9799 14 7 3.8007 -6.8442 0.9019 15 6 3.4592 -8.0449 0.3938 16 8 3.2075 -8.1540 -0.7876 17 6 3.3900 -9.2518 1.2934 18 16 2.9075 -10.7012 0.3226 19 6 2.9042 -11.9289 1.5866 20 1 3.1557 -11.6594 2.6017 21 6 2.5774 -13.2421 1.2778 22 7 2.5745 -14.1590 2.2221 23 14 2.1417 -13.7079 -0.4779 24 1 3.3741 -14.1052 -1.2049 25 1 1.1860 -14.8445 -0.4657 26 1 1.5187 -12.5445 -1.1587 27 6 2.5141 -4.9306 -0.0005 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8903 -0.5131 30 1 -0.3632 -0.8896 -0.5145 31 1 4.4489 1.2978 -0.0003 32 1 4.5387 -2.4437 0.6138 33 1 4.6318 -3.1698 -1.0199 34 1 5.8569 -4.7814 0.2773 35 1 4.7789 -4.5833 1.6992 36 1 4.0017 -6.7569 1.8468 37 1 4.3669 -9.4251 1.7448 38 1 2.6532 -9.0786 2.0777 39 1 2.3465 -15.0768 2.0063 40 1 1.9318 -5.1912 0.8833 41 1 1.9633 -5.1983 -0.9021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576131552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:09 Heat of formation + Delta-G solvation = -67.133275 kcal Electronic energy + Delta-G solvation = -25945.982745 eV Core-core repulsion = 21953.081619 eV Total energy + Delta-G solvation = -3992.901126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.46696 -41.39598 -40.44163 -38.56307 -35.99877 -35.29317 -34.66888 -33.41372 -32.31253 -30.77333 -29.60610 -28.18643 -27.82436 -25.57946 -23.90806 -23.04244 -22.29575 -21.73925 -20.78781 -19.91703 -18.88319 -18.19044 -17.92603 -17.68894 -17.32001 -17.10750 -16.86671 -16.39244 -16.36866 -15.75949 -15.59953 -15.26128 -14.95180 -14.74840 -14.58151 -14.43891 -14.10050 -13.90864 -13.78864 -13.54730 -13.36820 -13.32981 -13.02059 -13.00416 -12.72497 -12.60275 -12.46286 -12.03517 -11.87239 -11.59619 -11.27051 -11.16970 -11.05310 -10.53249 -10.29003 -10.11777 -9.71328 -8.99338 -8.51417 -6.21989 -0.00404 0.97756 1.02984 1.31208 1.40776 1.48054 1.52993 1.56902 1.80652 2.11825 2.23120 2.27013 2.71556 2.86827 2.99901 3.38013 3.46928 3.60484 3.73852 3.85999 4.00177 4.13078 4.22789 4.24438 4.28572 4.35645 4.47886 4.54052 4.57760 4.72465 4.80517 4.84683 4.92251 5.02475 5.07323 5.12730 5.30793 5.40683 5.70961 6.11878 6.22882 6.40966 6.45207 6.89532 6.93891 7.14360 8.60836 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.001937 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.699471 B =14450.815175 C =14880.413975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.047 3.953 3 O -0.199 6.199 4 C 0.198 3.802 5 N -0.485 5.485 6 C -0.102 4.102 7 C 0.605 3.395 8 O -0.569 6.569 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.125 4.125 12 C 0.140 3.860 13 H 0.097 0.903 14 N -0.701 5.701 15 C 0.539 3.461 16 O -0.558 6.558 17 C -0.111 4.111 18 S -0.177 6.177 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.045 3.955 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.260 1.260 26 H -0.238 1.238 27 C 0.098 3.902 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.306 0.694 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.421 0.579 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.277 0.723 40 H 0.067 0.933 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 36.425 -2.203 36.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.011 4.011 3 O -0.085 6.085 4 C -0.031 4.031 5 N -0.213 5.213 6 C -0.220 4.220 7 C 0.395 3.605 8 O -0.449 6.449 9 N -0.335 5.335 10 C -0.015 4.015 11 C -0.163 4.163 12 C 0.033 3.967 13 H 0.115 0.885 14 N -0.355 5.355 15 C 0.324 3.676 16 O -0.436 6.436 17 C -0.262 4.262 18 S 0.049 5.951 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.161 4.161 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.185 1.185 26 H -0.162 1.162 27 C -0.026 4.026 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.321 0.679 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.259 0.741 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.140 35.591 -4.079 36.191 hybrid contribution -0.485 -0.444 1.371 1.521 sum 4.655 35.147 -2.708 35.558 Atomic orbital electron populations 1.20647 0.81680 1.05681 1.05425 1.23997 0.95987 0.83264 0.97838 1.84427 1.19203 1.35545 1.69346 1.29274 0.85712 0.90987 0.97098 1.70755 1.20522 1.11437 1.18623 1.21120 0.90368 0.94241 1.16228 1.16747 0.84266 0.83204 0.76298 1.90784 1.17288 1.83755 1.53100 1.48198 1.08602 1.05237 1.71434 1.22676 0.76764 0.99358 1.02699 1.23166 0.99785 0.91039 1.02294 1.21912 0.93716 0.84830 0.96205 0.88488 1.45633 1.70391 1.06061 1.13422 1.20014 0.75353 0.84403 0.87796 1.90708 1.49233 1.85601 1.18021 1.23270 1.07159 0.94171 1.01629 1.84744 1.90756 1.02688 1.16876 1.22458 1.53660 0.95504 0.95915 0.91831 1.25564 0.93636 0.95324 1.01553 1.70011 1.47691 1.03002 1.34731 0.85870 0.79999 0.80332 0.80192 1.18575 1.18467 1.16187 1.22330 0.98663 0.79795 1.01836 0.87997 0.87584 0.88933 0.67947 0.87004 0.90507 0.86375 0.88277 0.74125 0.86322 0.86855 0.91392 0.91489 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.88 71.24 0.70 -0.29 16 2 C 0.05 0.75 7.44 25.19 0.19 0.93 16 3 O -0.20 -2.25 10.73 0.48 0.01 -2.25 16 4 C 0.20 1.42 13.19 130.52 1.72 3.14 16 5 N -0.48 -7.03 8.44 -305.15 -2.57 -9.60 16 6 C -0.10 -2.02 6.81 40.41 0.28 -1.74 16 7 C 0.61 15.44 7.85 86.66 0.68 16.12 16 8 O -0.57 -17.81 15.13 -4.06 -0.06 -17.87 16 9 N -0.60 -13.37 3.33 -815.56 -2.71 -16.09 16 10 C 0.11 1.57 6.15 86.86 0.53 2.11 16 11 C -0.12 -1.45 6.71 31.99 0.21 -1.24 16 12 C 0.14 2.80 3.32 46.20 0.15 2.95 16 13 H 0.10 2.27 7.55 -2.39 -0.02 2.26 16 14 N -0.70 -15.31 5.10 -436.84 -2.23 -17.54 16 15 C 0.54 17.73 7.85 87.66 0.69 18.42 16 16 O -0.56 -23.24 15.51 -3.05 -0.05 -23.28 16 17 C -0.11 -4.06 6.16 71.23 0.44 -3.63 16 18 S -0.18 -8.90 18.55 -56.49 -1.05 -9.95 16 19 C -0.53 -30.64 10.04 67.95 0.68 -29.96 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 21 C 0.04 2.62 5.50 84.86 0.47 3.09 16 22 N -0.92 -55.88 13.97 21.65 0.30 -55.57 16 23 Si 0.91 45.24 27.74 68.60 1.90 47.14 16 24 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 27 C 0.10 2.40 6.62 86.75 0.57 2.97 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.61 6.48 -2.39 -0.02 1.59 16 31 H 0.31 -1.60 8.06 -2.91 -0.02 -1.62 16 32 H 0.11 1.52 6.14 -2.39 -0.01 1.51 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.90 8.01 -2.39 -0.02 0.88 16 36 H 0.42 6.33 8.56 -92.71 -0.79 5.53 16 37 H 0.12 3.87 8.14 -2.40 -0.02 3.85 16 38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.07 1.75 8.03 -2.39 -0.02 1.73 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -84.06 363.11 1.11 -82.95 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.25 Total: 9.18 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 7.32 Total: 12.88 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -7.21 Total: -98.80 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.10 Total: -43.40 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -84.06 1.11 -82.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576131552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.817 kcal (2) G-P(sol) polarization free energy of solvation -84.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds