Wall clock time and date at job start Tue Mar 31 2020 22:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30011 * 127.33568 * 2 1 4 4 O 1.20659 * 112.30453 * 180.02562 * 3 2 1 5 5 C 1.33501 * 113.15488 * 359.72133 * 4 3 2 6 6 C 1.37361 * 106.33615 * 0.44919 * 5 4 3 7 7 C 1.47409 * 128.56181 * 179.85657 * 6 5 4 8 8 O 1.21601 * 119.99802 * 179.67669 * 7 6 5 9 9 N 1.34776 * 119.99718 * 359.67980 * 7 6 5 10 10 C 1.46504 * 119.99431 * 180.02562 * 9 7 6 11 11 H 1.08994 * 110.64467 * 31.85593 * 10 9 7 12 12 C 1.55162 * 110.71544 * 154.99890 * 10 9 7 13 13 C 1.54905 * 101.57925 * 153.86402 * 12 10 9 14 14 N 1.47427 * 104.83458 * 322.98985 * 13 12 10 15 15 C 1.34778 * 125.64870 * 204.09699 * 14 13 12 16 16 O 1.21278 * 119.99748 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00209 * 0.02562 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99753 * 23 21 19 25 25 H 1.48497 * 109.46782 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00030 * 23 21 19 27 27 C 1.47028 * 108.70223 * 24.35487 * 14 13 12 28 28 H 1.08996 * 109.47063 * 269.95332 * 1 2 3 29 29 H 1.08998 * 109.47046 * 29.95144 * 1 2 3 30 30 H 1.09000 * 109.47438 * 149.95566 * 1 2 3 31 31 H 1.07992 * 126.83067 * 180.31208 * 5 4 3 32 32 H 0.96994 * 120.00315 * 359.97438 * 9 7 6 33 33 H 1.08995 * 111.00381 * 35.78953 * 12 10 9 34 34 H 1.08993 * 111.03654 * 271.94901 * 12 10 9 35 35 H 1.08999 * 110.36854 * 204.15285 * 13 12 10 36 36 H 1.09007 * 110.37095 * 81.82455 * 13 12 10 37 37 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 38 38 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 39 39 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 40 40 H 1.08993 * 109.87909 * 118.13301 * 27 14 13 41 41 H 1.09002 * 109.87892 * 239.29904 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0050 6 6 2.3991 -1.1696 -0.0007 7 6 2.0400 -2.5993 -0.0011 8 8 0.8705 -2.9324 -0.0008 9 7 3.0079 -3.5372 -0.0017 10 6 2.6509 -4.9580 -0.0026 11 1 1.7171 -5.1193 -0.5410 12 6 3.7928 -5.8104 -0.6165 13 6 3.5616 -7.1801 0.0692 14 7 3.1348 -6.8482 1.4407 15 6 3.2563 -7.6505 2.5169 16 8 2.8684 -7.2722 3.6020 17 6 3.8740 -9.0173 2.3720 18 16 3.8943 -9.8440 3.9821 19 6 4.6445 -11.3733 3.5313 20 1 4.9344 -11.5512 2.5062 21 6 4.8688 -12.3469 4.4948 22 7 4.5159 -12.1299 5.7443 23 14 5.6713 -13.9651 4.0184 24 1 7.0193 -13.7018 3.4539 25 1 5.7972 -14.8278 5.2205 26 1 4.8346 -14.6522 3.0020 27 6 2.5491 -5.4997 1.4390 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 4.5966 -1.1195 0.0105 32 1 3.9407 -3.2714 -0.0023 33 1 4.7690 -5.4023 -0.3548 34 1 3.6827 -5.8914 -1.6979 35 1 4.4870 -7.7556 0.0887 36 1 2.7790 -7.7358 -0.4475 37 1 4.8942 -8.9176 2.0015 38 1 3.2878 -9.6081 1.6680 39 1 4.6723 -12.8105 6.4175 40 1 1.5043 -5.5490 1.7456 41 1 3.1064 -4.8526 2.1164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578064366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:02 Heat of formation + Delta-G solvation = -4.088936 kcal Electronic energy + Delta-G solvation = -25748.827814 eV Core-core repulsion = 21758.660496 eV Total energy + Delta-G solvation = -3990.167319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.40067 -40.52923 -39.37844 -37.35515 -34.93508 -34.69055 -32.68623 -32.45120 -30.98778 -29.79303 -29.17991 -27.99500 -25.55963 -25.18934 -23.50314 -21.88031 -21.62942 -20.97779 -19.43429 -18.76149 -18.20743 -17.75849 -17.18879 -16.98592 -16.52457 -15.96071 -15.35029 -15.05628 -14.94244 -14.82348 -14.20511 -14.11547 -13.91012 -13.69598 -13.61941 -13.51978 -12.98079 -12.89359 -12.61153 -12.56246 -12.28160 -12.02941 -11.85020 -11.77468 -11.24161 -11.06761 -11.05747 -10.79639 -10.58342 -10.38938 -10.28285 -9.86356 -9.71702 -9.42339 -9.08197 -8.60263 -8.26679 -6.53288 -6.23668 -3.94914 0.52040 1.32589 2.26293 2.61025 2.70485 2.94044 3.01279 3.21564 3.24064 3.27511 3.53727 3.58000 3.78427 4.01468 4.17422 4.23365 4.31396 4.42362 4.60447 4.81596 4.85309 5.00572 5.01068 5.11309 5.12664 5.16970 5.30632 5.34207 5.38076 5.49813 5.56979 5.61197 5.73248 5.74835 5.86538 5.96570 6.08539 6.31773 6.88576 7.55814 7.57699 7.63160 7.71897 8.32551 8.49484 9.21272 10.83671 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.001834 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.504203 B =15262.794393 C =15426.401454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.073 3.927 3 N -0.359 5.359 4 O 0.099 5.901 5 C -0.003 4.003 6 C -0.256 4.256 7 C 0.598 3.402 8 O -0.520 6.520 9 N -0.714 5.714 10 C 0.136 3.864 11 H 0.112 0.888 12 C -0.138 4.138 13 C 0.102 3.898 14 N -0.626 5.626 15 C 0.548 3.452 16 O -0.512 6.512 17 C -0.146 4.146 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.099 3.901 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.226 0.774 32 H 0.401 0.599 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.074 0.926 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 22.121 -18.418 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 N -0.067 5.067 4 O 0.040 5.960 5 C -0.085 4.085 6 C -0.263 4.263 7 C 0.385 3.615 8 O -0.396 6.396 9 N -0.366 5.366 10 C 0.031 3.969 11 H 0.130 0.870 12 C -0.177 4.177 13 C -0.021 4.021 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.386 6.386 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.026 4.026 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.243 0.757 32 H 0.236 0.764 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.070 23.632 -16.524 28.910 hybrid contribution 1.549 -2.230 -1.523 3.114 sum -0.521 21.401 -18.047 28.000 Atomic orbital electron populations 1.20306 0.84688 1.04497 1.04203 1.24913 0.99095 0.86148 0.98840 1.73717 0.89178 1.23507 1.20256 1.84598 1.21648 1.22913 1.66853 1.26446 1.00216 0.84286 0.97575 1.22311 0.92989 0.95474 1.15555 1.16839 0.85507 0.83085 0.76099 1.90831 1.18084 1.81796 1.48858 1.45719 1.09303 1.05750 1.75804 1.22038 1.00052 0.78827 0.96030 0.87040 1.23097 0.98498 0.95083 1.01003 1.22277 1.01119 0.96421 0.82331 1.48452 1.63089 1.16452 1.08505 1.20072 0.78209 0.85667 0.82372 1.90723 1.47915 1.74528 1.25420 1.23506 1.02834 0.95102 1.08245 1.85441 1.80619 1.14667 1.02632 1.22811 1.46523 1.01504 0.97602 0.90952 1.25001 0.95385 0.98737 0.94465 1.70011 1.44444 1.34724 1.01040 0.86217 0.79587 0.81604 0.78049 1.19940 1.20799 1.19921 1.22224 0.99792 0.84267 0.96283 0.89522 0.90311 0.88507 0.75735 0.76376 0.89787 0.88874 0.89601 0.90778 0.89259 0.89182 0.92096 0.90741 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.14 36.00 0.37 -0.24 16 2 C 0.07 0.66 7.58 -79.77 -0.60 0.05 16 3 N -0.36 -3.38 12.01 34.78 0.42 -2.96 16 4 O 0.10 0.72 11.06 18.63 0.21 0.92 16 5 C 0.00 -0.01 11.85 30.41 0.36 0.35 16 6 C -0.26 -1.96 6.47 -102.89 -0.67 -2.63 16 7 C 0.60 5.32 7.81 -12.53 -0.10 5.22 16 8 O -0.52 -6.46 15.34 5.28 0.08 -6.38 16 9 N -0.71 -4.47 5.10 -53.10 -0.27 -4.74 16 10 C 0.14 1.06 3.31 -66.09 -0.22 0.84 16 11 H 0.11 0.96 7.55 -51.93 -0.39 0.57 16 12 C -0.14 -0.78 6.72 -24.58 -0.17 -0.95 16 13 C 0.10 0.91 6.69 -2.53 -0.02 0.89 16 14 N -0.63 -8.49 3.33 -170.51 -0.57 -9.05 16 15 C 0.55 10.36 7.87 -10.99 -0.09 10.27 16 16 O -0.51 -11.90 16.19 5.56 0.09 -11.81 16 17 C -0.15 -2.91 5.16 36.00 0.19 -2.72 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 23 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 27 C 0.10 1.17 6.63 -3.06 -0.02 1.15 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.79 7.11 -51.93 -0.37 0.42 16 31 H 0.23 -0.13 7.68 -52.49 -0.40 -0.53 16 32 H 0.40 1.20 7.75 -40.82 -0.32 0.88 16 33 H 0.08 0.38 8.01 -51.93 -0.42 -0.03 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.61 7.85 -51.92 -0.41 1.20 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -38.34 369.34 -6.93 -45.27 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.19 Total: -3.28 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.77 Total: -0.56 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.31 Total: -42.00 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.38 Total: -17.26 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.34 -6.93 -45.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578064366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.184 kcal (2) G-P(sol) polarization free energy of solvation -38.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds