Wall clock time and date at job start Tue Mar 31 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35320 * 128.04055 * 2 1 4 4 O 1.34017 * 106.66894 * 180.02562 * 3 2 1 5 5 N 1.20902 * 111.84357 * 359.70876 * 4 3 2 6 6 C 1.30977 * 111.44161 * 0.48578 * 5 4 3 7 7 C 1.48330 * 126.93944 * 179.79867 * 6 5 4 8 8 O 1.21492 * 120.00503 * 179.68756 * 7 6 5 9 9 N 1.34779 * 119.99991 * 359.68112 * 7 6 5 10 10 C 1.47429 * 125.64850 * 0.04764 * 9 7 6 11 11 C 1.55117 * 104.94206 * 203.96367 * 10 9 7 12 12 C 1.55153 * 101.48761 * 323.22093 * 11 10 9 13 13 H 1.09002 * 110.71693 * 276.83086 * 12 11 10 14 14 N 1.46497 * 110.72124 * 153.73469 * 12 11 10 15 15 C 1.34773 * 120.00328 * 157.43846 * 14 12 11 16 16 O 1.21287 * 119.99548 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00396 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.47338 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00265 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99604 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99698 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99879 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 C 1.47018 * 125.65126 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.47213 * 270.00166 * 1 2 3 29 29 H 1.08999 * 109.47202 * 29.99536 * 1 2 3 30 30 H 1.08998 * 109.47068 * 149.99812 * 1 2 3 31 31 H 1.08009 * 126.66110 * 0.02562 * 3 2 1 32 32 H 1.09004 * 110.35967 * 322.92831 * 10 9 7 33 33 H 1.09001 * 110.36529 * 85.13555 * 10 9 7 34 34 H 1.08998 * 111.16073 * 205.12872 * 11 10 9 35 35 H 1.09005 * 110.93697 * 81.21760 * 11 10 9 36 36 H 0.97008 * 119.99878 * 337.44336 * 14 12 11 37 37 H 1.09004 * 109.47077 * 60.00506 * 17 15 14 38 38 H 1.08997 * 109.47267 * 300.00260 * 17 15 14 39 39 H 0.97001 * 119.99591 * 359.97438 * 22 21 19 40 40 H 1.09004 * 109.87922 * 59.56226 * 27 9 7 41 41 H 1.09000 * 110.01091 * 298.47540 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5774 -0.0006 5 7 3.5988 -0.6316 0.0048 6 6 2.3837 -1.1204 -0.0007 7 6 1.9992 -2.5530 -0.0010 8 8 0.8256 -2.8671 -0.0007 9 7 2.9518 -3.5065 -0.0017 10 6 4.4066 -3.2675 -0.0012 11 6 5.0234 -4.5536 -0.6110 12 6 4.0915 -5.6491 -0.0290 13 1 4.4038 -5.9260 0.9779 14 7 4.0645 -6.8245 -0.9030 15 6 3.7132 -8.0266 -0.4051 16 8 3.4190 -8.1352 0.7665 17 6 3.6849 -9.2356 -1.3043 18 16 3.1792 -10.6869 -0.3482 19 6 3.2313 -11.9171 -1.6086 20 1 3.5171 -11.6476 -2.6147 21 6 2.9040 -13.2322 -1.3088 22 7 2.5542 -13.5603 -0.0830 23 14 2.9599 -14.5364 -2.6449 24 1 4.3375 -14.6254 -3.1925 25 1 2.0174 -14.1713 -3.7329 26 1 2.5699 -15.8496 -2.0715 27 6 2.7124 -4.9570 -0.0015 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 2.0559 2.1076 0.0004 32 1 4.6488 -2.4009 -0.6164 33 1 4.7667 -3.1215 1.0172 34 1 6.0504 -4.6952 -0.2745 35 1 4.9699 -4.5329 -1.6995 36 1 4.2996 -6.7376 -1.8402 37 1 4.6788 -9.4029 -1.7195 38 1 2.9757 -9.0690 -2.1150 39 1 2.5255 -12.8831 0.6109 40 1 2.1390 -5.2382 -0.8849 41 1 2.1705 -5.2455 0.8992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578403531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:19 Heat of formation + Delta-G solvation = -4.096664 kcal Electronic energy + Delta-G solvation = -25935.423213 eV Core-core repulsion = 21945.255559 eV Total energy + Delta-G solvation = -3990.167654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.56451 -40.55972 -39.32142 -37.66009 -35.14391 -34.41080 -32.88593 -32.54602 -31.21129 -29.73987 -28.74428 -28.18469 -25.47074 -24.82377 -23.32832 -22.19345 -21.55719 -20.65527 -20.15014 -18.46808 -18.27233 -18.17772 -17.24484 -17.00724 -16.45570 -15.96229 -15.64875 -15.14637 -14.76358 -14.53030 -14.16662 -13.91636 -13.84940 -13.69069 -13.64753 -13.39627 -13.24422 -12.94126 -12.75709 -12.47343 -12.37161 -12.26641 -11.85652 -11.79786 -11.74568 -11.19791 -10.93038 -10.75602 -10.58132 -10.18434 -9.93193 -9.64797 -9.58990 -9.22032 -9.06362 -9.02106 -8.25307 -6.69810 -6.63862 -4.02245 0.66479 1.19065 2.24046 2.63261 2.74241 2.85358 2.88143 3.32966 3.36962 3.39811 3.51068 3.57465 3.93752 4.07004 4.23418 4.29175 4.37853 4.57429 4.63807 4.77637 4.88630 4.93354 5.01669 5.15825 5.20759 5.21697 5.27722 5.36991 5.38338 5.40304 5.48950 5.65006 5.70773 5.73538 5.80858 5.85700 5.96800 6.40313 6.95112 7.43628 7.47967 7.68289 7.89711 8.38927 8.48238 9.25104 10.79976 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.001870 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.702577 B =14972.449705 C =15384.956797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.150 4.150 3 C -0.065 4.065 4 O 0.122 5.878 5 N -0.329 5.329 6 C -0.022 4.022 7 C 0.610 3.390 8 O -0.516 6.516 9 N -0.603 5.603 10 C 0.100 3.900 11 C -0.139 4.139 12 C 0.139 3.861 13 H 0.109 0.891 14 N -0.728 5.728 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.131 4.131 18 S -0.115 6.115 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.285 1.285 25 H -0.285 1.285 26 H -0.278 1.278 27 C 0.096 3.904 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.224 0.776 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.278 0.722 40 H 0.078 0.922 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 32.620 -2.922 32.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.155 4.155 3 C -0.146 4.146 4 O 0.047 5.953 5 N -0.030 5.030 6 C -0.181 4.181 7 C 0.396 3.604 8 O -0.390 6.390 9 N -0.338 5.338 10 C -0.023 4.023 11 C -0.177 4.177 12 C 0.032 3.968 13 H 0.127 0.873 14 N -0.383 5.383 15 C 0.319 3.681 16 O -0.386 6.386 17 C -0.283 4.283 18 S 0.112 5.888 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.517 5.517 23 Si 0.910 3.090 24 H -0.211 1.211 25 H -0.211 1.211 26 H -0.203 1.203 27 C -0.028 4.028 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.241 0.759 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.237 0.763 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.307 30.054 -1.212 30.260 hybrid contribution 0.006 2.087 -1.713 2.700 sum 3.313 32.141 -2.925 32.443 Atomic orbital electron populations 1.20248 0.86417 1.04021 1.03413 1.21392 0.99240 0.89993 1.04831 1.25805 0.82253 1.01347 1.05160 1.84780 1.29555 1.15333 1.65654 1.74227 1.21446 0.91556 1.15788 1.23344 0.89663 0.96722 1.08417 1.16459 0.84581 0.81847 0.77471 1.90820 1.16881 1.81326 1.49936 1.48206 1.06997 1.06539 1.72016 1.22559 0.78915 0.98721 1.02150 1.23149 0.99910 0.93102 1.01582 1.21851 0.93321 0.85002 0.96621 0.87322 1.45937 1.71968 1.07140 1.13239 1.20379 0.75504 0.83545 0.88687 1.90721 1.45956 1.84954 1.16986 1.23317 1.05461 0.97197 1.02278 1.84841 1.89042 0.98464 1.16488 1.23695 1.58208 0.96573 0.97145 0.91587 1.26064 0.92848 0.97723 1.00914 1.70806 1.41512 1.37682 1.01703 0.83327 0.76661 0.75297 0.73703 1.21134 1.21125 1.20260 1.22521 0.98431 0.77916 1.03887 0.90377 0.90854 0.89388 0.75929 0.88772 0.90508 0.88482 0.89752 0.76331 0.88797 0.88817 0.90993 0.90331 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.01 36.00 0.36 -0.20 16 2 C -0.15 -1.18 6.34 -104.12 -0.66 -1.84 16 3 C -0.07 -0.32 12.24 29.69 0.36 0.05 16 4 O 0.12 0.86 11.18 17.24 0.19 1.05 16 5 N -0.33 -3.03 9.31 33.29 0.31 -2.72 16 6 C -0.02 -0.23 7.02 -82.53 -0.58 -0.81 16 7 C 0.61 7.81 7.88 -12.11 -0.10 7.71 16 8 O -0.52 -7.99 15.67 5.37 0.08 -7.91 16 9 N -0.60 -6.87 3.33 -171.31 -0.57 -7.44 16 10 C 0.10 0.84 6.17 -2.41 -0.01 0.83 16 11 C -0.14 -1.03 6.73 -24.47 -0.16 -1.19 16 12 C 0.14 1.52 3.26 -66.10 -0.22 1.30 16 13 H 0.11 1.34 7.62 -51.93 -0.40 0.94 16 14 N -0.73 -8.92 5.12 -52.04 -0.27 -9.18 16 15 C 0.53 9.43 7.85 -10.99 -0.09 9.35 16 16 O -0.51 -11.13 15.55 5.55 0.09 -11.05 16 17 C -0.13 -2.58 6.16 36.00 0.22 -2.36 16 18 S -0.11 -3.06 19.60 -107.50 -2.11 -5.17 16 19 C -0.61 -17.46 9.50 30.94 0.29 -17.17 16 20 H 0.07 1.81 7.80 -52.48 -0.41 1.40 16 21 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.49 13.67 55.49 0.76 -26.73 16 23 Si 1.08 24.90 29.92 -169.99 -5.09 19.81 16 24 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.10 1.19 6.62 -3.07 -0.02 1.17 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.80 6.89 -51.93 -0.36 0.44 16 31 H 0.22 0.03 8.06 -52.48 -0.42 -0.40 16 32 H 0.09 0.77 6.24 -51.93 -0.32 0.44 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.55 8.00 -51.93 -0.42 0.13 16 36 H 0.40 3.73 8.54 -40.82 -0.35 3.38 16 37 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 38 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.28 8.83 7.12 -40.82 -0.29 8.54 16 40 H 0.08 1.03 8.03 -51.93 -0.42 0.62 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -37.61 365.22 -6.92 -44.53 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.14 Total: 1.55 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.69 Total: -2.25 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.23 Total: -46.07 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.36 Total: -17.90 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.81 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.11 Total: -5.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.61 -6.92 -44.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578403531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.433 kcal (2) G-P(sol) polarization free energy of solvation -37.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds