Wall clock time and date at job start Tue Mar 31 2020 22:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41259 * 128.07915 * 2 1 4 4 N 1.30126 * 106.59285 * 180.25126 * 3 2 1 5 5 O 1.20887 * 111.98047 * 359.76633 * 4 3 2 6 6 C 1.34644 * 111.46916 * 0.02562 * 5 4 3 7 7 C 1.47507 * 126.94392 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99848 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00306 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00269 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84700 * 313.98413 * 10 9 7 12 12 C 1.53781 * 113.61568 * 85.18215 * 10 9 7 13 13 C 1.53786 * 87.07934 * 89.19937 * 12 10 9 14 14 H 1.09000 * 113.61130 * 140.07071 * 13 12 10 15 15 N 1.46499 * 113.61498 * 270.88326 * 13 12 10 16 16 C 1.34776 * 120.00167 * 201.86631 * 15 13 12 17 17 O 1.21283 * 119.99398 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00278 * 179.72626 * 16 15 13 19 19 S 1.81002 * 109.47217 * 180.27395 * 18 16 15 20 20 C 1.76198 * 99.99963 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00202 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99905 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99875 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99971 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47135 * 120.00146 * 24 22 20 27 27 H 1.48498 * 109.47280 * 240.00238 * 24 22 20 28 28 C 1.53776 * 87.07955 * 25.43326 * 13 12 10 29 29 H 1.09004 * 109.47052 * 270.13622 * 1 2 3 30 30 H 1.09001 * 109.46963 * 30.13225 * 1 2 3 31 31 H 1.08999 * 109.47572 * 150.13592 * 1 2 3 32 32 H 1.08003 * 126.70940 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99684 * 0.02562 * 9 7 6 34 34 H 1.09001 * 113.60748 * 334.65413 * 12 10 9 35 35 H 1.08992 * 113.61285 * 203.74866 * 12 10 9 36 36 H 0.96999 * 119.99796 * 21.86720 * 15 13 12 37 37 H 1.08999 * 109.46786 * 300.27445 * 18 16 15 38 38 H 1.08998 * 109.46798 * 60.27457 * 18 16 15 39 39 H 0.97000 * 120.00051 * 179.97438 * 23 22 20 40 40 H 1.09002 * 113.61316 * 89.11764 * 28 13 12 41 41 H 1.09001 * 113.61139 * 220.01593 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6353 -0.0055 5 8 3.5994 -0.5735 -0.0042 6 6 2.3507 -1.0771 0.0020 7 6 1.9695 -2.5020 0.0047 8 8 0.7951 -2.8171 0.0099 9 7 2.9227 -3.4548 0.0014 10 6 2.5441 -4.8700 0.0047 11 1 1.7641 -5.0977 0.7313 12 6 2.2641 -5.4361 -1.3975 13 6 3.7604 -5.7837 -1.4699 14 1 3.9624 -6.7485 -1.9352 15 7 4.5879 -4.7048 -2.0152 16 6 5.7949 -4.9838 -2.5460 17 8 6.1957 -6.1281 -2.5726 18 6 6.6435 -3.8747 -3.1126 19 16 8.1897 -4.5648 -3.7524 20 6 8.9630 -3.0931 -4.3363 21 1 8.4612 -2.1423 -4.2338 22 6 10.2174 -3.1558 -4.9270 23 7 10.8291 -4.3147 -5.0514 24 14 11.0376 -1.5956 -5.5454 25 1 10.1489 -0.4339 -5.2883 26 1 12.3267 -1.3989 -4.8348 27 1 11.2894 -1.7134 -7.0041 28 6 3.7434 -5.8304 0.0671 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8912 -0.5117 32 1 2.0948 2.1541 0.0004 33 1 3.8596 -3.2034 -0.0024 34 1 1.9560 -4.6802 -2.1199 35 1 1.6125 -6.3097 -1.3935 36 1 4.2670 -3.7897 -1.9942 37 1 6.1039 -3.3812 -3.9209 38 1 6.8656 -3.1507 -2.3287 39 1 11.7057 -4.3585 -5.4645 40 1 3.4963 -6.8120 0.4714 41 1 4.6296 -5.3930 0.5269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578765555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:57 Heat of formation + Delta-G solvation = 15.027093 kcal Electronic energy + Delta-G solvation = -26495.283674 eV Core-core repulsion = 22505.945288 eV Total energy + Delta-G solvation = -3989.338386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.40779 -40.95830 -39.38160 -37.98549 -35.24215 -34.06883 -33.04453 -32.43831 -32.34956 -29.22142 -28.74709 -26.12232 -25.58988 -25.31393 -23.86229 -22.67689 -21.25343 -20.43142 -20.00694 -18.92188 -18.16233 -17.87063 -16.81206 -16.39247 -16.13912 -15.98029 -15.64541 -15.10284 -14.94673 -14.81020 -14.59658 -14.24575 -13.94529 -13.67201 -13.61950 -13.25482 -13.07298 -12.92109 -12.75032 -12.61888 -12.15021 -11.98501 -11.66796 -11.24484 -11.07312 -11.02835 -10.83250 -10.77395 -10.73169 -10.58724 -9.93881 -9.81820 -9.56134 -9.43563 -9.08914 -8.98073 -8.25502 -6.51526 -6.22855 -3.93397 0.37581 1.68050 2.15114 2.52324 2.72886 2.97394 3.00731 3.21377 3.27634 3.32256 3.64916 3.76168 4.06188 4.13626 4.19412 4.24114 4.34855 4.57753 4.59282 4.81808 4.89047 5.08369 5.12710 5.19113 5.28330 5.29565 5.37493 5.43345 5.48869 5.54156 5.64020 5.68712 5.75339 5.82340 5.85787 6.02813 6.11241 6.60103 6.83215 7.48748 7.58869 7.60710 7.69250 8.34779 8.53139 9.22987 10.84626 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.003008 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.626572 B = 9306.942974 C =11594.316617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.115 4.115 3 C -0.018 4.018 4 N -0.334 5.334 5 O 0.121 5.879 6 C -0.102 4.102 7 C 0.611 3.389 8 O -0.506 6.506 9 N -0.701 5.701 10 C 0.120 3.880 11 H 0.100 0.900 12 C -0.154 4.154 13 C 0.122 3.878 14 H 0.107 0.893 15 N -0.725 5.725 16 C 0.535 3.465 17 O -0.512 6.512 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.155 4.155 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.199 0.801 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.109 0.891 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.979 5.695 12.918 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.195 4.195 4 N -0.032 5.032 5 O 0.046 5.954 6 C -0.168 4.168 7 C 0.395 3.605 8 O -0.381 6.381 9 N -0.354 5.354 10 C 0.015 3.985 11 H 0.118 0.882 12 C -0.193 4.193 13 C 0.016 3.984 14 H 0.125 0.875 15 N -0.379 5.379 16 C 0.321 3.679 17 O -0.385 6.385 18 C -0.306 4.306 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 C -0.194 4.194 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.216 0.784 33 H 0.246 0.754 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.768 4.015 12.798 25.568 hybrid contribution -0.300 3.013 -0.355 3.048 sum -22.068 7.027 12.443 26.291 Atomic orbital electron populations 1.20347 0.86253 1.04301 1.03480 1.21664 0.99060 0.90267 1.00969 1.25057 0.87646 1.02243 1.04564 1.73825 1.23026 0.91055 1.15273 1.85002 1.27933 1.15623 1.66866 1.23965 0.85009 0.96097 1.11684 1.16442 0.85633 0.81416 0.76982 1.90854 1.17049 1.80599 1.49596 1.45757 1.09887 1.05761 1.73979 1.22020 0.98770 0.79054 0.98612 0.88161 1.23747 0.96308 1.02263 0.97006 1.21840 0.90077 0.92948 0.93543 0.87525 1.45849 1.18683 1.10032 1.63346 1.20358 0.80616 0.90389 0.76519 1.90706 1.70956 1.21851 1.54985 1.23553 1.03267 1.00170 1.03616 1.85385 1.09132 1.12769 1.75883 1.22908 1.05728 0.94113 1.45563 0.90857 1.24989 0.96146 0.97184 0.95249 1.70023 1.14787 1.23961 1.41523 0.86122 0.79124 0.81800 0.78496 1.19598 1.20542 1.20562 1.23780 0.97751 1.00010 0.97879 0.90088 0.90609 0.89119 0.78367 0.75388 0.90345 0.87460 0.77065 0.89219 0.89103 0.92228 0.87255 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.95 36.00 0.36 -0.19 16 2 C -0.11 -0.97 6.37 -103.99 -0.66 -1.63 16 3 C -0.02 -0.15 12.14 -17.13 -0.21 -0.35 16 4 N -0.33 -3.66 12.04 30.46 0.37 -3.29 16 5 O 0.12 1.25 11.04 15.55 0.17 1.43 16 6 C -0.10 -0.97 7.29 -36.32 -0.26 -1.23 16 7 C 0.61 5.81 7.82 -12.48 -0.10 5.71 16 8 O -0.51 -5.75 15.05 5.29 0.08 -5.67 16 9 N -0.70 -5.62 4.34 -54.07 -0.23 -5.86 16 10 C 0.12 0.90 3.99 -67.12 -0.27 0.64 16 11 H 0.10 0.72 8.05 -51.93 -0.42 0.31 16 12 C -0.15 -1.22 7.62 -25.92 -0.20 -1.41 16 13 C 0.12 1.25 4.28 -67.12 -0.29 0.96 16 14 H 0.11 1.27 7.54 -51.93 -0.39 0.88 16 15 N -0.72 -8.92 4.96 -53.02 -0.26 -9.18 16 16 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 17 O -0.51 -11.05 15.50 5.55 0.09 -10.96 16 18 C -0.16 -3.05 6.16 36.00 0.22 -2.83 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 C -0.16 -1.23 7.58 -25.92 -0.20 -1.42 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.70 6.73 -51.93 -0.35 0.35 16 32 H 0.20 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.41 3.06 7.66 -40.82 -0.31 2.75 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.39 4.07 7.19 -40.82 -0.29 3.78 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -35.62 370.12 -7.32 -42.94 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.11 Total: 2.96 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.49 Total: -5.27 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.60 Total: -43.65 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.34 Total: -15.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.62 -7.32 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578765555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.970 kcal (2) G-P(sol) polarization free energy of solvation -35.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds