Wall clock time and date at job start Tue Mar 31 2020 22:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41259 * 128.07915 * 2 1 4 4 N 1.30126 * 106.59285 * 180.25126 * 3 2 1 5 5 O 1.20887 * 111.98047 * 359.76633 * 4 3 2 6 6 C 1.34644 * 111.46916 * 0.02562 * 5 4 3 7 7 C 1.47507 * 126.94392 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99848 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00306 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00269 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84700 * 313.98413 * 10 9 7 12 12 C 1.53781 * 113.61568 * 85.18215 * 10 9 7 13 13 C 1.53786 * 87.07934 * 89.19937 * 12 10 9 14 14 H 1.09000 * 113.61130 * 140.07071 * 13 12 10 15 15 N 1.46499 * 113.61498 * 270.88326 * 13 12 10 16 16 C 1.34776 * 120.00167 * 201.86631 * 15 13 12 17 17 O 1.21283 * 119.99398 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00278 * 179.72626 * 16 15 13 19 19 S 1.81002 * 109.47217 * 180.27395 * 18 16 15 20 20 C 1.76198 * 99.99963 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00202 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99905 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99875 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99971 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47135 * 120.00146 * 24 22 20 27 27 H 1.48498 * 109.47280 * 240.00238 * 24 22 20 28 28 C 1.53776 * 87.07955 * 25.43326 * 13 12 10 29 29 H 1.09004 * 109.47052 * 270.13622 * 1 2 3 30 30 H 1.09001 * 109.46963 * 30.13225 * 1 2 3 31 31 H 1.08999 * 109.47572 * 150.13592 * 1 2 3 32 32 H 1.08003 * 126.70940 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99684 * 0.02562 * 9 7 6 34 34 H 1.09001 * 113.60748 * 334.65413 * 12 10 9 35 35 H 1.08992 * 113.61285 * 203.74866 * 12 10 9 36 36 H 0.96999 * 119.99796 * 21.86720 * 15 13 12 37 37 H 1.08999 * 109.46786 * 300.27445 * 18 16 15 38 38 H 1.08998 * 109.46798 * 60.27457 * 18 16 15 39 39 H 0.97000 * 120.00051 * 179.97438 * 23 22 20 40 40 H 1.09002 * 113.61316 * 89.11764 * 28 13 12 41 41 H 1.09001 * 113.61139 * 220.01593 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5890 0.6353 -0.0055 5 8 3.5994 -0.5735 -0.0042 6 6 2.3507 -1.0771 0.0020 7 6 1.9695 -2.5020 0.0047 8 8 0.7951 -2.8171 0.0099 9 7 2.9227 -3.4548 0.0014 10 6 2.5441 -4.8700 0.0047 11 1 1.7641 -5.0977 0.7313 12 6 2.2641 -5.4361 -1.3975 13 6 3.7604 -5.7837 -1.4699 14 1 3.9624 -6.7485 -1.9352 15 7 4.5879 -4.7048 -2.0152 16 6 5.7949 -4.9838 -2.5460 17 8 6.1957 -6.1281 -2.5726 18 6 6.6435 -3.8747 -3.1126 19 16 8.1897 -4.5648 -3.7524 20 6 8.9630 -3.0931 -4.3363 21 1 8.4612 -2.1423 -4.2338 22 6 10.2174 -3.1558 -4.9270 23 7 10.8291 -4.3147 -5.0514 24 14 11.0376 -1.5956 -5.5454 25 1 10.1489 -0.4339 -5.2883 26 1 12.3267 -1.3989 -4.8348 27 1 11.2894 -1.7134 -7.0041 28 6 3.7434 -5.8304 0.0671 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8912 -0.5117 32 1 2.0948 2.1541 0.0004 33 1 3.8596 -3.2034 -0.0024 34 1 1.9560 -4.6802 -2.1199 35 1 1.6125 -6.3097 -1.3935 36 1 4.2670 -3.7897 -1.9942 37 1 6.1039 -3.3812 -3.9209 38 1 6.8656 -3.1507 -2.3287 39 1 11.7057 -4.3585 -5.4645 40 1 3.4963 -6.8120 0.4714 41 1 4.6296 -5.3930 0.5269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578765555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:56 Heat of formation + Delta-G solvation = -10.567738 kcal Electronic energy + Delta-G solvation = -26496.393549 eV Core-core repulsion = 22505.945288 eV Total energy + Delta-G solvation = -3990.448261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.09488 -41.79116 -40.44609 -39.04840 -35.89356 -34.94823 -34.59188 -34.06878 -33.11923 -30.67638 -29.36399 -27.69067 -26.79504 -26.15071 -24.62824 -23.40140 -22.16825 -21.47558 -20.82969 -19.81092 -19.64491 -18.87735 -18.02377 -17.25231 -17.10459 -16.89531 -16.87857 -16.59780 -16.21393 -15.97017 -15.69451 -15.39351 -14.89664 -14.66866 -14.46563 -14.22954 -14.15530 -13.95336 -13.62691 -13.37344 -13.30183 -13.16568 -12.95893 -12.92265 -12.59801 -12.30002 -12.08266 -11.73803 -11.53366 -11.44549 -11.32221 -11.16530 -10.97307 -10.62297 -10.28995 -10.26517 -10.03859 -8.66589 -8.35765 -6.13051 -0.32600 1.04424 1.25496 1.40193 1.44261 1.47830 1.56643 1.57896 1.80692 2.05288 2.25010 2.28795 2.98551 3.17262 3.30229 3.36919 3.47378 3.58673 3.68750 3.82331 3.95816 3.96408 4.12928 4.28002 4.30305 4.48951 4.61997 4.75096 4.78669 4.79102 4.80294 4.86185 4.92777 5.00253 5.01706 5.21575 5.30348 5.41704 5.61558 6.13997 6.19363 6.42160 6.78810 7.00703 7.06128 7.19888 8.73617 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.003008 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.626572 B = 9306.942974 C =11594.316617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.115 4.115 3 C -0.008 4.008 4 N -0.366 5.366 5 O 0.106 5.894 6 C -0.116 4.116 7 C 0.615 3.385 8 O -0.525 6.525 9 N -0.697 5.697 10 C 0.124 3.876 11 H 0.112 0.888 12 C -0.140 4.140 13 C 0.104 3.896 14 H 0.090 0.910 15 N -0.700 5.700 16 C 0.539 3.461 17 O -0.557 6.557 18 C -0.134 4.134 19 S -0.144 6.144 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.143 4.143 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.231 0.769 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.407 0.593 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.132 0.868 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.904 7.668 13.647 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.185 4.185 4 N -0.067 5.067 5 O 0.035 5.965 6 C -0.181 4.181 7 C 0.399 3.601 8 O -0.402 6.402 9 N -0.349 5.349 10 C 0.020 3.980 11 H 0.130 0.870 12 C -0.179 4.179 13 C -0.001 4.001 14 H 0.108 0.892 15 N -0.354 5.354 16 C 0.325 3.675 17 O -0.434 6.434 18 C -0.285 4.285 19 S 0.083 5.917 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.199 1.199 28 C -0.182 4.182 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.249 0.751 34 H 0.089 0.911 35 H 0.149 0.851 36 H 0.244 0.756 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.734 5.984 13.552 27.978 hybrid contribution 0.145 2.398 -0.518 2.458 sum -23.589 8.382 13.033 28.223 Atomic orbital electron populations 1.20411 0.84771 1.04749 1.04191 1.22036 1.00047 0.89968 0.99929 1.25614 0.86700 1.03649 1.02566 1.73809 1.24549 0.91381 1.16965 1.84969 1.28323 1.15624 1.67621 1.24103 0.85178 0.96441 1.12384 1.16430 0.85450 0.81567 0.76649 1.90844 1.17738 1.80900 1.50743 1.45771 1.09845 1.05917 1.73333 1.22057 0.98748 0.78530 0.98669 0.86977 1.23747 0.94415 1.02923 0.96814 1.22132 0.91361 0.91429 0.95197 0.89211 1.45581 1.16893 1.11422 1.61465 1.19991 0.81784 0.88997 0.76702 1.90696 1.72283 1.23191 1.57216 1.23404 0.99817 1.00842 1.04456 1.85513 1.14156 1.15043 1.76944 1.23228 1.06274 0.94291 1.45626 0.90149 1.26089 0.96803 1.00892 0.95238 1.70177 1.15343 1.26588 1.42550 0.84938 0.78008 0.77298 0.77914 1.18268 1.19840 1.19868 1.23764 0.97630 1.01327 0.95451 0.89143 0.88305 0.90470 0.75248 0.75103 0.91087 0.85147 0.75619 0.87692 0.87194 0.91964 0.84975 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.95 71.23 0.71 -0.18 16 2 C -0.12 -1.74 6.37 -19.45 -0.12 -1.86 16 3 C -0.01 -0.11 12.14 85.69 1.04 0.93 16 4 N -0.37 -7.63 12.04 -58.56 -0.71 -8.33 16 5 O 0.11 2.14 11.04 65.81 0.73 2.86 16 6 C -0.12 -2.07 7.29 24.38 0.18 -1.89 16 7 C 0.61 10.87 7.82 86.69 0.68 11.54 16 8 O -0.53 -11.16 15.05 -3.99 -0.06 -11.22 16 9 N -0.70 -10.08 4.34 -443.23 -1.92 -12.00 16 10 C 0.12 1.59 3.99 45.52 0.18 1.77 16 11 H 0.11 1.29 8.05 -2.38 -0.02 1.27 16 12 C -0.14 -1.90 7.62 31.12 0.24 -1.67 16 13 C 0.10 2.00 4.28 45.52 0.19 2.20 16 14 H 0.09 2.11 7.54 -2.39 -0.02 2.09 16 15 N -0.70 -16.56 4.96 -440.04 -2.18 -18.75 16 16 C 0.54 19.07 7.85 87.66 0.69 19.76 16 17 O -0.56 -24.64 15.50 -3.04 -0.05 -24.69 16 18 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 19 S -0.14 -7.91 20.57 -56.49 -1.16 -9.07 16 20 C -0.55 -31.25 9.50 67.95 0.65 -30.61 16 21 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 22 C 0.01 0.84 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.81 13.22 21.65 0.29 -55.53 16 24 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 C -0.14 -1.99 7.58 31.12 0.24 -1.75 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.07 6.73 -2.39 -0.02 1.05 16 32 H 0.23 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.41 5.62 7.66 -92.71 -0.71 4.91 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.41 7.79 7.19 -92.71 -0.67 7.12 16 37 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 38 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 Total: -1.00 -79.66 370.12 2.25 -77.42 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.28 Total: 18.68 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.57 Total: -5.27 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -4.53 Total: -94.61 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: 0.62 Total: -33.04 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -79.66 2.25 -77.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578765555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.849 kcal (2) G-P(sol) polarization free energy of solvation -79.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds