Wall clock time and date at job start Tue Mar 31 2020 22:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46757 * 2 1 4 4 N 1.33690 * 126.27055 * 270.01722 * 3 2 1 5 5 C 1.30613 * 108.99450 * 179.97438 * 4 3 2 6 6 O 1.33664 * 109.15347 * 359.77004 * 5 4 3 7 7 C 1.35344 * 107.68496 * 0.37293 * 6 5 4 8 8 C 1.46718 * 126.64486 * 179.89809 * 7 6 5 9 9 O 1.21686 * 120.00237 * 179.97438 * 8 7 6 10 10 N 1.34784 * 119.99865 * 359.68830 * 8 7 6 11 11 C 1.47068 * 136.05818 * 359.62797 * 10 8 7 12 12 C 1.53762 * 87.88584 * 152.96465 * 11 10 8 13 13 N 1.46506 * 114.39016 * 272.67617 * 12 11 10 14 14 C 1.34782 * 119.99645 * 248.58472 * 13 12 11 15 15 O 1.21279 * 119.99700 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99862 * 180.02562 * 14 13 12 17 17 S 1.80993 * 109.47141 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00113 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00082 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00098 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99858 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47246 * 90.00215 * 22 20 18 24 24 H 1.48498 * 109.47514 * 210.00380 * 22 20 18 25 25 H 1.48503 * 109.47198 * 330.00337 * 22 20 18 26 26 C 1.47069 * 136.05474 * 179.97438 * 10 8 7 27 27 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47424 * 300.00362 * 1 2 3 29 29 H 1.09005 * 109.46997 * 60.00554 * 1 2 3 30 30 H 1.08994 * 109.47424 * 239.99638 * 2 1 3 31 31 H 1.08997 * 109.46505 * 119.99802 * 2 1 3 32 32 H 1.08000 * 125.42382 * 180.02562 * 5 4 3 33 33 H 1.08999 * 113.46642 * 267.69604 * 11 10 8 34 34 H 1.09001 * 113.46436 * 38.13574 * 11 10 8 35 35 H 1.08995 * 114.08374 * 139.77925 * 12 11 10 36 36 H 0.96991 * 119.99874 * 68.59168 * 13 12 11 37 37 H 1.08994 * 109.47107 * 300.00294 * 16 14 13 38 38 H 1.09004 * 109.46802 * 59.99784 * 16 14 13 39 39 H 0.97006 * 119.99799 * 179.97438 * 21 20 18 40 40 H 1.08994 * 113.46798 * 321.87116 * 26 10 8 41 41 H 1.09000 * 113.46112 * 92.30688 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2956 2.1667 -1.0779 5 6 2.7108 3.3427 -0.6900 6 8 2.7207 3.3857 0.6459 7 6 2.3009 2.1814 1.0992 8 6 2.1569 1.7753 2.5016 9 8 1.7663 0.6554 2.7737 10 7 2.4626 2.6407 3.4887 11 6 2.9584 4.0230 3.5692 12 6 2.2505 4.1373 4.9294 13 7 0.8485 4.5548 4.8486 14 6 0.4789 5.7669 5.3077 15 8 1.3070 6.5120 5.7873 16 6 -0.9632 6.1963 5.2252 17 16 -1.1380 7.8598 5.9166 18 6 -2.8695 8.1018 5.6976 19 1 -3.4706 7.3256 5.2475 20 6 -3.4612 9.2897 6.1045 21 7 -2.7287 10.2355 6.6535 22 14 -5.2969 9.5460 5.8729 23 1 -6.0199 9.0628 7.0767 24 1 -5.5741 10.9915 5.6761 25 1 -5.7563 8.7873 4.6819 26 6 2.4529 2.6162 4.9591 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.9965 4.1530 -1.3444 33 1 4.0440 4.0914 3.6378 34 1 2.5416 4.6788 2.8048 35 1 2.8211 4.6790 5.6836 36 1 0.1864 3.9590 4.4648 37 1 -1.2817 6.2012 4.1828 38 1 -1.5825 5.5002 5.7910 39 1 -3.1421 11.0658 6.9375 40 1 1.6058 2.0737 5.3786 41 1 3.4053 2.3135 5.3943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581939159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:13 Heat of formation + Delta-G solvation = -6.224763 kcal Electronic energy + Delta-G solvation = -26233.851959 eV Core-core repulsion = 22243.592024 eV Total energy + Delta-G solvation = -3990.259935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.83194 -40.98086 -39.12754 -38.02763 -36.00723 -33.65541 -33.28851 -32.47090 -30.89596 -29.66513 -28.39308 -26.52357 -25.53900 -24.78397 -23.94005 -22.37728 -21.33211 -20.69214 -19.77280 -18.14154 -17.89853 -17.31123 -17.05438 -16.73776 -16.41625 -16.11907 -15.50356 -15.25568 -15.03779 -14.83959 -14.44022 -14.17366 -13.83273 -13.67348 -13.60082 -13.31819 -13.18379 -13.03510 -12.58981 -12.38333 -12.05819 -11.85279 -11.49601 -11.38201 -11.35083 -11.21884 -11.09680 -11.06581 -10.80413 -10.41993 -9.87200 -9.64873 -9.47108 -9.19180 -9.10797 -9.05723 -8.30752 -6.55739 -6.26112 -3.97194 0.42479 1.96663 2.03259 2.46067 2.68713 2.84687 2.86358 3.19888 3.23926 3.28027 3.55790 3.61337 3.90187 4.15169 4.16366 4.28860 4.48054 4.78898 4.91361 4.97193 4.98601 5.01194 5.08390 5.09445 5.11039 5.16324 5.24621 5.32613 5.43601 5.44262 5.65285 5.69911 5.74398 5.79993 5.85919 5.99796 6.06558 6.41850 7.05859 7.17356 7.49912 7.55885 7.57195 8.31023 8.42194 9.19580 10.81287 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.002385 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.137554 B =11738.392891 C =12553.666311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.085 3.915 4 N -0.492 5.492 5 C 0.204 3.796 6 O -0.187 6.187 7 C -0.110 4.110 8 C 0.637 3.363 9 O -0.512 6.512 10 N -0.640 5.640 11 C 0.083 3.917 12 C 0.115 3.885 13 N -0.719 5.719 14 C 0.538 3.462 15 O -0.512 6.512 16 C -0.154 4.154 17 S -0.057 6.057 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.100 3.900 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.257 0.743 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.401 0.599 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.269 0.731 40 H 0.089 0.911 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.870 -18.335 -11.787 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.040 4.040 4 N -0.221 5.221 5 C -0.021 4.021 6 O -0.072 6.072 7 C -0.165 4.165 8 C 0.426 3.574 9 O -0.390 6.390 10 N -0.375 5.375 11 C -0.041 4.041 12 C 0.007 3.993 13 N -0.372 5.372 14 C 0.325 3.675 15 O -0.385 6.385 16 C -0.305 4.305 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.023 4.023 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.273 0.727 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.934 -17.749 -11.503 25.328 hybrid contribution -2.196 -0.518 -0.557 2.324 sum 11.738 -18.267 -12.060 24.838 Atomic orbital electron populations 1.21644 0.93580 1.02416 1.02164 1.20177 0.96818 0.87649 1.04358 1.22090 0.97319 0.98263 0.86283 1.70368 1.17051 1.03341 1.31326 1.28405 0.96709 0.97512 0.79477 1.84551 1.64679 1.33653 1.24363 1.22743 1.12673 0.85309 0.95753 1.15725 0.77957 0.83224 0.80513 1.90883 1.47853 1.18658 1.81565 1.49542 1.64753 1.15914 1.07271 1.23832 1.00267 0.81211 0.98818 1.22119 0.84824 0.94711 0.97647 1.45644 1.07989 1.18626 1.64945 1.20378 0.90728 0.80193 0.76225 1.90709 1.53027 1.51874 1.42872 1.23538 0.94208 1.07041 1.05711 1.85371 1.11139 1.07641 1.78941 1.22861 0.93146 1.05032 1.47420 0.90905 1.24991 0.99209 0.94869 0.94475 1.70011 1.35893 1.06162 1.38194 0.86162 0.82996 0.77611 0.78709 1.20232 1.20725 1.19684 1.23493 1.03778 0.95938 0.79101 0.91555 0.92348 0.92590 0.89978 0.88287 0.72718 0.88150 0.89329 0.84993 0.76409 0.89152 0.89010 0.92136 0.89217 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.50 5.93 -27.88 -0.17 -0.66 16 3 C 0.08 0.92 6.41 -82.47 -0.53 0.40 16 4 N -0.49 -5.07 11.26 -10.89 -0.12 -5.20 16 5 C 0.20 1.55 13.21 52.24 0.69 2.24 16 6 O -0.19 -1.78 9.46 4.42 0.04 -1.74 16 7 C -0.11 -1.21 7.13 -36.84 -0.26 -1.48 16 8 C 0.64 7.39 8.04 -12.83 -0.10 7.29 16 9 O -0.51 -6.91 15.57 5.20 0.08 -6.83 16 10 N -0.64 -6.13 3.69 -186.60 -0.69 -6.82 16 11 C 0.08 0.70 7.68 -8.36 -0.06 0.63 16 12 C 0.11 1.07 4.61 -67.68 -0.31 0.76 16 13 N -0.72 -8.59 5.40 -53.49 -0.29 -8.88 16 14 C 0.54 9.12 7.85 -10.99 -0.09 9.04 16 15 O -0.51 -10.47 15.46 5.56 0.09 -10.38 16 16 C -0.15 -2.96 6.16 36.00 0.22 -2.74 16 17 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 18 C -0.54 -14.98 9.50 30.94 0.29 -14.68 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 22 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.10 0.77 8.38 -8.51 -0.07 0.70 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.00 6.46 -51.93 -0.34 0.67 16 32 H 0.26 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.85 7.53 -51.93 -0.39 0.46 16 35 H 0.13 1.27 7.45 -51.93 -0.39 0.88 16 36 H 0.40 4.23 8.76 -40.82 -0.36 3.87 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 38 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -36.32 373.43 -7.12 -43.45 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.24 Total: 0.78 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.12 Total: 2.57 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.37 Total: -45.86 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.21 Total: -18.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.32 -7.12 -43.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581939159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.222 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds