Wall clock time and date at job start Tue Mar 31 2020 22:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46757 * 2 1 4 4 N 1.33690 * 126.27055 * 270.01722 * 3 2 1 5 5 C 1.30613 * 108.99450 * 179.97438 * 4 3 2 6 6 O 1.33664 * 109.15347 * 359.77004 * 5 4 3 7 7 C 1.35344 * 107.68496 * 0.37293 * 6 5 4 8 8 C 1.46718 * 126.64486 * 179.89809 * 7 6 5 9 9 O 1.21686 * 120.00237 * 179.97438 * 8 7 6 10 10 N 1.34784 * 119.99865 * 359.68830 * 8 7 6 11 11 C 1.47068 * 136.05818 * 359.62797 * 10 8 7 12 12 C 1.53762 * 87.88584 * 152.96465 * 11 10 8 13 13 N 1.46506 * 114.39016 * 272.67617 * 12 11 10 14 14 C 1.34782 * 119.99645 * 248.58472 * 13 12 11 15 15 O 1.21279 * 119.99700 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99862 * 180.02562 * 14 13 12 17 17 S 1.80993 * 109.47141 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00113 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00082 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00098 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99858 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47246 * 90.00215 * 22 20 18 24 24 H 1.48498 * 109.47514 * 210.00380 * 22 20 18 25 25 H 1.48503 * 109.47198 * 330.00337 * 22 20 18 26 26 C 1.47069 * 136.05474 * 179.97438 * 10 8 7 27 27 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47424 * 300.00362 * 1 2 3 29 29 H 1.09005 * 109.46997 * 60.00554 * 1 2 3 30 30 H 1.08994 * 109.47424 * 239.99638 * 2 1 3 31 31 H 1.08997 * 109.46505 * 119.99802 * 2 1 3 32 32 H 1.08000 * 125.42382 * 180.02562 * 5 4 3 33 33 H 1.08999 * 113.46642 * 267.69604 * 11 10 8 34 34 H 1.09001 * 113.46436 * 38.13574 * 11 10 8 35 35 H 1.08995 * 114.08374 * 139.77925 * 12 11 10 36 36 H 0.96991 * 119.99874 * 68.59168 * 13 12 11 37 37 H 1.08994 * 109.47107 * 300.00294 * 16 14 13 38 38 H 1.09004 * 109.46802 * 59.99784 * 16 14 13 39 39 H 0.97006 * 119.99799 * 179.97438 * 21 20 18 40 40 H 1.08994 * 113.46798 * 321.87116 * 26 10 8 41 41 H 1.09000 * 113.46112 * 92.30688 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2956 2.1667 -1.0779 5 6 2.7108 3.3427 -0.6900 6 8 2.7207 3.3857 0.6459 7 6 2.3009 2.1814 1.0992 8 6 2.1569 1.7753 2.5016 9 8 1.7663 0.6554 2.7737 10 7 2.4626 2.6407 3.4887 11 6 2.9584 4.0230 3.5692 12 6 2.2505 4.1373 4.9294 13 7 0.8485 4.5548 4.8486 14 6 0.4789 5.7669 5.3077 15 8 1.3070 6.5120 5.7873 16 6 -0.9632 6.1963 5.2252 17 16 -1.1380 7.8598 5.9166 18 6 -2.8695 8.1018 5.6976 19 1 -3.4706 7.3256 5.2475 20 6 -3.4612 9.2897 6.1045 21 7 -2.7287 10.2355 6.6535 22 14 -5.2969 9.5460 5.8729 23 1 -6.0199 9.0628 7.0767 24 1 -5.5741 10.9915 5.6761 25 1 -5.7563 8.7873 4.6819 26 6 2.4529 2.6162 4.9591 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.9965 4.1530 -1.3444 33 1 4.0440 4.0914 3.6378 34 1 2.5416 4.6788 2.8048 35 1 2.8211 4.6790 5.6836 36 1 0.1864 3.9590 4.4648 37 1 -1.2817 6.2012 4.1828 38 1 -1.5825 5.5002 5.7910 39 1 -3.1421 11.0658 6.9375 40 1 1.6058 2.0737 5.3786 41 1 3.4053 2.3135 5.3943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581939159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:13 Heat of formation + Delta-G solvation = -35.197332 kcal Electronic energy + Delta-G solvation = -26235.108304 eV Core-core repulsion = 22243.592024 eV Total energy + Delta-G solvation = -3991.516280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.53152 -41.83180 -40.28746 -39.00895 -36.73697 -34.81285 -34.58158 -34.01533 -31.82876 -30.79340 -29.40604 -27.66319 -27.19321 -25.54844 -24.62777 -23.25427 -22.19477 -21.75302 -20.58102 -19.86167 -18.85448 -18.10985 -17.94759 -17.72072 -17.26162 -17.14562 -16.88013 -16.55850 -16.35931 -15.97696 -15.76924 -15.14731 -14.81609 -14.69057 -14.59061 -14.42678 -14.27313 -13.98899 -13.76675 -13.44631 -13.17056 -13.14334 -12.90014 -12.62345 -12.55957 -12.23378 -12.15562 -12.11418 -11.97044 -11.74262 -11.23642 -11.14764 -11.05471 -10.30989 -10.28536 -10.19077 -9.83761 -8.66084 -8.35437 -6.12625 -0.30930 1.24926 1.25987 1.33949 1.41787 1.45408 1.52554 1.55982 1.76125 1.89570 2.15211 2.26941 2.98911 3.04774 3.16068 3.29313 3.40905 3.57138 3.71916 3.89100 4.14011 4.22168 4.27510 4.27740 4.34260 4.35714 4.45122 4.49786 4.52512 4.59253 4.65795 4.74878 4.78304 4.95219 5.04797 5.15675 5.27605 5.41449 5.41856 6.19268 6.27894 6.39051 6.44876 6.76719 7.06484 7.14781 8.73556 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.002385 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.137554 B =11738.392891 C =12553.666311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 C 0.076 3.924 4 N -0.521 5.521 5 C 0.224 3.776 6 O -0.191 6.191 7 C -0.131 4.131 8 C 0.632 3.368 9 O -0.540 6.540 10 N -0.641 5.641 11 C 0.091 3.909 12 C 0.107 3.893 13 N -0.698 5.698 14 C 0.545 3.455 15 O -0.551 6.551 16 C -0.134 4.134 17 S -0.140 6.140 18 C -0.548 4.548 19 H 0.080 0.920 20 C 0.015 3.985 21 N -0.909 5.909 22 Si 0.996 3.004 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.260 1.260 26 C 0.108 3.892 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.304 0.696 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.411 0.589 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.272 0.728 40 H 0.089 0.911 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.797 -19.347 -12.974 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C -0.048 4.048 4 N -0.250 5.250 5 C 0.000 4.000 6 O -0.077 6.077 7 C -0.186 4.186 8 C 0.422 3.578 9 O -0.420 6.420 10 N -0.375 5.375 11 C -0.032 4.032 12 C 0.000 4.000 13 N -0.351 5.351 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.285 4.285 17 S 0.087 5.913 18 C -0.696 4.696 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.014 4.014 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.319 0.681 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.247 0.753 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.877 -18.805 -12.702 26.599 hybrid contribution -2.069 -0.266 -0.273 2.104 sum 11.807 -19.071 -12.974 25.912 Atomic orbital electron populations 1.21594 0.93280 1.03151 1.01186 1.20186 0.97022 0.87371 1.04377 1.22335 0.97010 0.98770 0.86655 1.70388 1.18662 1.04515 1.31417 1.29537 0.93732 0.97643 0.79130 1.84552 1.64853 1.33053 1.25257 1.22668 1.14253 0.86035 0.95686 1.15821 0.77811 0.83126 0.81024 1.90857 1.49314 1.19783 1.82093 1.49608 1.64111 1.16036 1.07785 1.23896 1.01694 0.80273 0.97381 1.22306 0.83007 0.96051 0.98640 1.45380 1.09708 1.16818 1.63147 1.19916 0.89324 0.81294 0.76333 1.90701 1.53562 1.53433 1.45109 1.23386 0.96599 1.02463 1.06054 1.85471 1.11607 1.13865 1.80379 1.23199 0.93539 1.05524 1.47352 0.90174 1.26076 1.04546 0.94455 0.93894 1.70165 1.38207 1.06804 1.39391 0.84992 0.76361 0.77727 0.79152 1.19355 1.20230 1.18415 1.23617 1.05397 0.94160 0.78179 0.90012 0.94005 0.92697 0.88930 0.89172 0.68118 0.85296 0.90318 0.84812 0.75305 0.87662 0.87359 0.91946 0.89295 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.89 71.98 0.71 -1.66 16 2 C -0.05 -0.97 5.93 29.85 0.18 -0.80 16 3 C 0.08 1.61 6.41 41.83 0.27 1.88 16 4 N -0.52 -10.01 11.26 -303.13 -3.41 -13.42 16 5 C 0.22 2.87 13.21 130.42 1.72 4.59 16 6 O -0.19 -3.30 9.46 -7.09 -0.07 -3.37 16 7 C -0.13 -2.80 7.13 24.04 0.17 -2.62 16 8 C 0.63 14.16 8.04 86.46 0.70 14.86 16 9 O -0.54 -14.47 15.57 -4.30 -0.07 -14.54 16 10 N -0.64 -11.12 3.69 -862.48 -3.18 -14.30 16 11 C 0.09 1.32 7.68 83.27 0.64 1.96 16 12 C 0.11 1.78 4.61 45.55 0.21 1.99 16 13 N -0.70 -15.59 5.40 -441.54 -2.38 -17.97 16 14 C 0.55 18.10 7.85 87.65 0.69 18.78 16 15 O -0.55 -22.64 15.46 -3.02 -0.05 -22.69 16 16 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 17 S -0.14 -7.51 20.57 -56.49 -1.16 -8.68 16 18 C -0.55 -30.76 9.50 67.96 0.65 -30.12 16 19 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 20 C 0.02 0.86 5.49 84.86 0.47 1.33 16 21 N -0.91 -54.85 13.22 21.65 0.29 -54.56 16 22 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 C 0.11 1.41 8.38 83.18 0.70 2.11 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.85 6.46 -2.39 -0.02 1.84 16 32 H 0.30 0.27 8.06 -2.91 -0.02 0.24 16 33 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.35 7.53 -2.39 -0.02 1.34 16 35 H 0.13 2.33 7.45 -2.39 -0.02 2.31 16 36 H 0.41 7.88 8.76 -92.72 -0.81 7.07 16 37 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 38 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -81.35 373.43 -0.21 -81.55 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.27 Total: 15.17 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.53 Total: 7.69 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -8.69 Total: -100.25 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.18 Total: -40.59 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.16 Total: -8.68 kcal Total: -81.35 -0.21 -81.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581939159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.356 kcal (2) G-P(sol) polarization free energy of solvation -81.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds