Wall clock time and date at job start Tue Mar 31 2020 22:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70939 * 125.58836 * 2 1 4 4 C 1.70768 * 91.13938 * 180.26515 * 3 2 1 5 5 C 1.50707 * 124.70844 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.87462 * 344.32650 * 5 4 3 7 7 C 1.54320 * 109.87961 * 105.33978 * 5 4 3 8 8 C 1.55408 * 102.82487 * 141.51732 * 7 5 4 9 9 C 1.54907 * 101.66700 * 324.66191 * 8 7 5 10 10 N 1.47018 * 109.88103 * 223.30936 * 5 4 3 11 11 C 1.34781 * 125.64801 * 61.60342 * 10 5 4 12 12 O 1.21577 * 120.00054 * 0.02562 * 11 10 5 13 13 N 1.34780 * 119.99758 * 179.97438 * 11 10 5 14 14 C 1.46495 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46900 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99994 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47244 * 89.99619 * 19 17 15 21 21 H 1.48499 * 109.47144 * 209.99714 * 19 17 15 22 22 H 1.48500 * 109.46948 * 329.99459 * 19 17 15 23 23 N 1.28620 * 110.57965 * 359.97438 * 4 3 2 24 24 C 1.33594 * 115.77381 * 0.02562 * 23 4 3 25 25 C 1.47115 * 123.16044 * 180.02562 * 24 23 4 26 26 O 1.21551 * 120.00166 * 179.97438 * 25 24 23 27 27 O 1.34800 * 119.99425 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.47454 * 269.68850 * 1 2 3 29 29 H 1.09001 * 109.47392 * 29.69619 * 1 2 3 30 30 H 1.09007 * 109.47156 * 149.69334 * 1 2 3 31 31 H 1.09007 * 110.72293 * 259.96922 * 7 5 4 32 32 H 1.08997 * 110.72592 * 23.24749 * 7 5 4 33 33 H 1.08999 * 111.03613 * 206.52330 * 8 7 5 34 34 H 1.08998 * 110.89203 * 82.73524 * 8 7 5 35 35 H 1.09005 * 110.36528 * 278.08813 * 9 8 7 36 36 H 1.08995 * 110.46307 * 155.80886 * 9 8 7 37 37 H 0.97005 * 120.00140 * 0.02562 * 13 11 10 38 38 H 1.08993 * 109.47540 * 300.00142 * 14 13 11 39 39 H 1.09005 * 109.47194 * 60.00767 * 14 13 11 40 40 H 0.96999 * 119.99721 * 179.97438 * 18 17 15 41 41 H 0.96698 * 116.99849 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5017 1.3901 0.0000 4 6 3.9099 0.4241 -0.0079 5 6 5.3184 0.9604 -0.0123 6 1 5.3124 2.0152 -0.2868 7 6 5.9510 0.7850 1.3843 8 6 7.4179 0.3941 1.0519 9 6 7.2325 -0.4590 -0.2277 10 7 6.1397 0.2003 -0.9657 11 6 5.9282 0.1189 -2.2944 12 8 4.9908 0.7070 -2.7978 13 7 6.7567 -0.6134 -3.0650 14 6 6.5265 -0.7023 -4.5090 15 6 7.5845 -1.5750 -5.1336 16 1 8.3514 -2.0194 -4.5165 17 6 7.5734 -1.8062 -6.4928 18 7 6.6393 -1.2655 -7.2442 19 14 8.8845 -2.8885 -7.2668 20 1 8.4208 -4.2992 -7.2741 21 1 9.1348 -2.4425 -8.6610 22 1 10.1400 -2.7841 -6.4807 23 7 3.6016 -0.8246 -0.0096 24 6 2.2944 -1.1002 -0.0055 25 6 1.7611 -2.4712 -0.0061 26 8 0.5597 -2.6560 -0.0017 27 8 2.6048 -3.5225 -0.0114 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3634 0.8927 -0.5091 30 1 -0.3634 -0.8873 -0.5186 31 1 5.9159 1.7199 1.9438 32 1 5.4548 -0.0141 1.9350 33 1 7.8569 -0.1971 1.8555 34 1 8.0194 1.2798 0.8472 35 1 6.9520 -1.4793 0.0340 36 1 8.1461 -0.4581 -0.8220 37 1 7.5049 -1.0823 -2.6634 38 1 5.5434 -1.1348 -4.6943 39 1 6.5730 0.2951 -4.9464 40 1 6.6317 -1.4278 -8.2004 41 1 2.2076 -4.4041 -0.0120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600881319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:50 Heat of formation + Delta-G solvation = -72.764270 kcal Electronic energy + Delta-G solvation = -27338.283099 eV Core-core repulsion = 23345.137794 eV Total energy + Delta-G solvation = -3993.145305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85424 -39.96590 -38.82959 -37.20383 -36.20850 -34.15593 -33.00838 -32.34193 -31.18198 -30.09200 -27.48192 -27.01092 -24.75787 -24.19513 -22.87848 -21.97653 -21.06852 -20.05657 -19.08501 -18.82245 -17.76399 -17.57571 -16.39935 -16.19006 -16.02057 -15.98615 -15.36455 -14.70292 -14.58891 -14.28735 -13.98547 -13.75671 -13.56307 -13.34774 -13.10448 -12.98292 -12.82027 -12.74578 -12.33178 -11.93383 -11.92549 -11.74455 -11.63288 -11.58265 -11.34172 -10.98448 -10.92804 -10.86231 -10.58499 -10.27157 -9.79537 -9.44239 -9.42922 -9.34272 -8.94784 -8.70378 -8.44752 -7.71231 -6.12740 -4.19070 0.33879 1.06361 1.48792 1.70454 2.98535 3.04184 3.22603 3.26745 3.32907 3.35732 3.79432 4.05280 4.32850 4.39947 4.51930 4.63652 4.71605 4.85139 4.97383 5.09811 5.12516 5.23446 5.33952 5.34673 5.55185 5.58570 5.64170 5.73989 5.75985 5.81097 5.93028 6.07911 6.37044 6.43043 7.17853 7.41063 7.54191 7.59011 7.60703 7.87681 7.90005 8.05204 8.78699 8.92843 9.34609 9.50432 10.97599 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.003513 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.650467 B = 7969.144561 C = 9017.442489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.185 4.185 3 S 0.232 5.768 4 C 0.029 3.971 5 C 0.237 3.763 6 H 0.094 0.906 7 C -0.120 4.120 8 C -0.127 4.127 9 C 0.102 3.898 10 N -0.627 5.627 11 C 0.716 3.284 12 O -0.595 6.595 13 N -0.724 5.724 14 C 0.269 3.731 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 N -0.405 5.405 24 C 0.010 3.990 25 C 0.570 3.430 26 O -0.512 6.512 27 O -0.492 6.492 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.386 0.614 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 4.166 22.232 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.310 4.310 3 S 0.492 5.508 4 C -0.253 4.253 5 C 0.128 3.872 6 H 0.112 0.888 7 C -0.159 4.159 8 C -0.166 4.166 9 C -0.022 4.022 10 N -0.367 5.367 11 C 0.417 3.583 12 O -0.474 6.474 13 N -0.375 5.375 14 C 0.148 3.852 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.119 5.119 24 C -0.124 4.124 25 C 0.412 3.588 26 O -0.402 6.402 27 O -0.301 6.301 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.219 0.781 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -5.980 5.594 21.463 22.972 hybrid contribution 0.425 -2.468 -0.554 2.565 sum -5.555 3.126 20.909 21.859 Atomic orbital electron populations 1.20554 0.85541 1.04818 1.03656 1.25593 1.03452 0.96604 1.05307 1.82737 0.96117 1.08399 1.63593 1.27441 1.01513 0.91832 1.04521 1.19826 0.82059 0.95132 0.90200 0.88838 1.22758 0.96105 1.03151 0.93927 1.22791 0.95879 1.00487 0.97395 1.22242 0.90394 0.96780 0.92738 1.47551 1.30254 1.54071 1.04867 1.15633 0.83077 0.80647 0.78896 1.90862 1.32898 1.51590 1.72021 1.45704 1.30312 1.51056 1.10464 1.18971 0.96999 0.97188 0.72066 1.21216 1.12531 1.31085 0.93052 0.91975 1.24937 0.96138 0.95968 0.96929 1.69982 1.33039 1.43373 1.05935 0.86414 0.81492 0.80443 0.78542 1.20490 1.21023 1.19743 1.66813 1.14974 1.17742 1.12322 1.19037 0.88470 0.91898 1.12989 1.19511 0.83382 0.84325 0.71575 1.90857 1.15939 1.86004 1.47393 1.84728 1.42468 1.17962 1.84976 0.89909 0.90790 0.87961 0.89362 0.89872 0.89605 0.90258 0.91291 0.90500 0.78073 0.95913 0.95748 0.92500 0.73036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.64 36.00 0.35 -0.58 16 2 C -0.19 -2.49 6.40 -35.36 -0.23 -2.72 16 3 S 0.23 2.81 22.89 -107.50 -2.46 0.35 16 4 C 0.03 0.43 5.31 -13.62 -0.07 0.36 16 5 C 0.24 3.13 3.34 -68.11 -0.23 2.90 16 6 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.12 -1.06 6.49 -24.76 -0.16 -1.22 16 8 C -0.13 -1.05 7.09 -24.45 -0.17 -1.22 16 9 C 0.10 1.23 6.58 -2.53 -0.02 1.21 16 10 N -0.63 -10.16 3.02 -170.01 -0.51 -10.68 16 11 C 0.72 15.58 8.28 -86.91 -0.72 14.86 16 12 O -0.60 -15.18 16.18 5.30 0.09 -15.09 16 13 N -0.72 -16.37 5.51 -66.42 -0.37 -16.74 16 14 C 0.27 7.43 5.43 -5.20 -0.03 7.41 16 15 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 16 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 N -0.41 -6.76 10.54 -8.53 -0.09 -6.85 16 24 C 0.01 0.15 6.71 -84.55 -0.57 -0.41 16 25 C 0.57 8.60 8.31 34.33 0.29 8.89 16 26 O -0.51 -7.86 14.90 -19.30 -0.29 -8.15 16 27 O -0.49 -6.53 13.37 -40.76 -0.54 -7.08 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.26 6.02 -51.92 -0.31 0.95 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.77 7.84 -51.93 -0.41 0.37 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.89 7.29 -51.93 -0.38 0.51 16 37 H 0.39 7.64 6.80 -40.82 -0.28 7.36 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.41 3.17 9.11 45.56 0.42 3.58 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -37.64 365.09 -9.23 -46.88 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.30 Total: 5.76 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: -1.98 Total: 15.80 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.23 Total: -60.15 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.75 Total: -30.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.46 Total: 0.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.64 -9.23 -46.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600881319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.886 kcal (2) G-P(sol) polarization free energy of solvation -37.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds