Wall clock time and date at job start Tue Mar 31 2020 22:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70939 * 125.58836 * 2 1 4 4 C 1.70768 * 91.13938 * 180.26515 * 3 2 1 5 5 C 1.50707 * 124.70844 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.87462 * 344.32650 * 5 4 3 7 7 C 1.54320 * 109.87961 * 105.33978 * 5 4 3 8 8 C 1.55408 * 102.82487 * 141.51732 * 7 5 4 9 9 C 1.54907 * 101.66700 * 324.66191 * 8 7 5 10 10 N 1.47018 * 109.88103 * 223.30936 * 5 4 3 11 11 C 1.34781 * 125.64801 * 61.60342 * 10 5 4 12 12 O 1.21577 * 120.00054 * 0.02562 * 11 10 5 13 13 N 1.34780 * 119.99758 * 179.97438 * 11 10 5 14 14 C 1.46495 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46900 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99994 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47244 * 89.99619 * 19 17 15 21 21 H 1.48499 * 109.47144 * 209.99714 * 19 17 15 22 22 H 1.48500 * 109.46948 * 329.99459 * 19 17 15 23 23 N 1.28620 * 110.57965 * 359.97438 * 4 3 2 24 24 C 1.33594 * 115.77381 * 0.02562 * 23 4 3 25 25 C 1.47115 * 123.16044 * 180.02562 * 24 23 4 26 26 O 1.21551 * 120.00166 * 179.97438 * 25 24 23 27 27 O 1.34800 * 119.99425 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.47454 * 269.68850 * 1 2 3 29 29 H 1.09001 * 109.47392 * 29.69619 * 1 2 3 30 30 H 1.09007 * 109.47156 * 149.69334 * 1 2 3 31 31 H 1.09007 * 110.72293 * 259.96922 * 7 5 4 32 32 H 1.08997 * 110.72592 * 23.24749 * 7 5 4 33 33 H 1.08999 * 111.03613 * 206.52330 * 8 7 5 34 34 H 1.08998 * 110.89203 * 82.73524 * 8 7 5 35 35 H 1.09005 * 110.36528 * 278.08813 * 9 8 7 36 36 H 1.08995 * 110.46307 * 155.80886 * 9 8 7 37 37 H 0.97005 * 120.00140 * 0.02562 * 13 11 10 38 38 H 1.08993 * 109.47540 * 300.00142 * 14 13 11 39 39 H 1.09005 * 109.47194 * 60.00767 * 14 13 11 40 40 H 0.96999 * 119.99721 * 179.97438 * 18 17 15 41 41 H 0.96698 * 116.99849 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5017 1.3901 0.0000 4 6 3.9099 0.4241 -0.0079 5 6 5.3184 0.9604 -0.0123 6 1 5.3124 2.0152 -0.2868 7 6 5.9510 0.7850 1.3843 8 6 7.4179 0.3941 1.0519 9 6 7.2325 -0.4590 -0.2277 10 7 6.1397 0.2003 -0.9657 11 6 5.9282 0.1189 -2.2944 12 8 4.9908 0.7070 -2.7978 13 7 6.7567 -0.6134 -3.0650 14 6 6.5265 -0.7023 -4.5090 15 6 7.5845 -1.5750 -5.1336 16 1 8.3514 -2.0194 -4.5165 17 6 7.5734 -1.8062 -6.4928 18 7 6.6393 -1.2655 -7.2442 19 14 8.8845 -2.8885 -7.2668 20 1 8.4208 -4.2992 -7.2741 21 1 9.1348 -2.4425 -8.6610 22 1 10.1400 -2.7841 -6.4807 23 7 3.6016 -0.8246 -0.0096 24 6 2.2944 -1.1002 -0.0055 25 6 1.7611 -2.4712 -0.0061 26 8 0.5597 -2.6560 -0.0017 27 8 2.6048 -3.5225 -0.0114 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3634 0.8927 -0.5091 30 1 -0.3634 -0.8873 -0.5186 31 1 5.9159 1.7199 1.9438 32 1 5.4548 -0.0141 1.9350 33 1 7.8569 -0.1971 1.8555 34 1 8.0194 1.2798 0.8472 35 1 6.9520 -1.4793 0.0340 36 1 8.1461 -0.4581 -0.8220 37 1 7.5049 -1.0823 -2.6634 38 1 5.5434 -1.1348 -4.6943 39 1 6.5730 0.2951 -4.9464 40 1 6.6317 -1.4278 -8.2004 41 1 2.2076 -4.4041 -0.0120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600881319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:49 Heat of formation + Delta-G solvation = -101.905887 kcal Electronic energy + Delta-G solvation = -27339.546774 eV Core-core repulsion = 23345.137794 eV Total energy + Delta-G solvation = -3994.408980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96676 -41.27163 -40.08120 -38.52455 -37.30024 -36.15513 -34.50820 -33.87683 -32.45188 -31.08628 -29.07138 -28.48133 -25.76322 -25.47842 -24.60578 -23.24770 -22.04981 -21.36209 -20.52116 -20.07530 -19.13545 -18.67397 -18.01086 -17.49053 -17.32099 -17.11495 -16.96122 -16.50192 -15.90148 -15.61724 -15.28733 -15.02034 -14.58788 -14.45489 -14.30052 -14.22726 -14.08041 -13.89224 -13.79528 -13.64104 -13.21147 -12.94812 -12.89403 -12.72516 -12.70279 -12.53677 -12.25825 -12.09274 -11.70288 -11.63536 -11.49382 -11.22725 -10.87274 -10.81786 -10.44884 -10.10391 -9.98729 -9.44713 -8.30068 -6.46967 -0.71830 0.05635 0.42178 0.59039 1.41647 1.45036 1.55893 1.72361 1.92740 2.07887 2.21275 2.37697 2.93809 3.04881 3.26239 3.60362 3.63279 3.69505 3.81731 4.00255 4.14924 4.23924 4.54028 4.55524 4.69555 4.70157 4.78491 4.89348 4.95663 5.01274 5.02908 5.12599 5.23381 5.31164 5.38517 5.39185 5.47917 5.69157 5.82977 6.17439 6.37248 6.64344 6.87649 7.16359 7.23298 7.68758 8.82474 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.003513 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.650467 B = 7969.144561 C = 9017.442489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.189 4.189 3 S 0.292 5.708 4 C 0.002 3.998 5 C 0.223 3.777 6 H 0.100 0.900 7 C -0.107 4.107 8 C -0.112 4.112 9 C 0.089 3.911 10 N -0.622 5.622 11 C 0.711 3.289 12 O -0.641 6.641 13 N -0.722 5.722 14 C 0.291 3.709 15 C -0.555 4.555 16 H 0.082 0.918 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.253 1.253 23 N -0.435 5.435 24 C -0.028 4.028 25 C 0.567 3.433 26 O -0.523 6.523 27 O -0.499 6.499 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.401 0.599 38 H -0.024 1.024 39 H -0.012 1.012 40 H 0.269 0.731 41 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 4.344 24.339 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 S 0.552 5.448 4 C -0.279 4.279 5 C 0.115 3.885 6 H 0.118 0.882 7 C -0.147 4.147 8 C -0.149 4.149 9 C -0.032 4.032 10 N -0.360 5.360 11 C 0.413 3.587 12 O -0.524 6.524 13 N -0.375 5.375 14 C 0.168 3.832 15 C -0.593 4.593 16 H 0.100 0.900 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.177 1.177 23 N -0.149 5.149 24 C -0.161 4.161 25 C 0.410 3.590 26 O -0.414 6.414 27 O -0.311 6.311 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.237 0.763 38 H -0.006 1.006 39 H 0.005 0.995 40 H 0.078 0.922 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -4.256 5.752 23.672 24.730 hybrid contribution -0.190 -2.464 -1.154 2.728 sum -4.446 3.288 22.518 23.187 Atomic orbital electron populations 1.20652 0.83776 1.04975 1.05049 1.26070 1.04928 0.96817 1.03541 1.82411 0.93942 1.06455 1.62008 1.27748 1.03155 0.92157 1.04840 1.20356 0.81540 0.94815 0.91818 0.88184 1.22813 0.95694 1.04982 0.91179 1.22806 0.95783 1.00609 0.95742 1.22585 0.89060 0.97249 0.94350 1.47509 1.31546 1.53666 1.03286 1.15786 0.82201 0.80011 0.80731 1.90809 1.34584 1.53225 1.73741 1.45316 1.31379 1.52045 1.08807 1.18349 0.95046 0.94823 0.74988 1.21574 1.12783 1.31161 0.93797 0.90003 1.26074 0.98607 0.97293 0.97477 1.70149 1.35340 1.44992 1.06459 0.85130 0.78542 0.77957 0.77415 1.19759 1.20704 1.17699 1.66780 1.15754 1.19027 1.13355 1.19312 0.88829 0.92828 1.15139 1.19570 0.83359 0.84656 0.71410 1.90838 1.16139 1.86270 1.48164 1.84686 1.42733 1.19094 1.84633 0.87720 0.88705 0.89658 0.85667 0.90252 0.86708 0.88798 0.91728 0.90053 0.76349 1.00584 0.99450 0.92217 0.70680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.64 71.23 0.69 -1.07 16 2 C -0.19 -5.01 6.40 25.00 0.16 -4.85 16 3 S 0.29 6.78 22.89 -56.49 -1.29 5.48 16 4 C 0.00 0.07 5.31 88.58 0.47 0.54 16 5 C 0.22 5.61 3.34 44.60 0.15 5.76 16 6 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 7 C -0.11 -1.56 6.49 31.87 0.21 -1.35 16 8 C -0.11 -1.43 7.09 32.07 0.23 -1.20 16 9 C 0.09 2.02 6.58 86.85 0.57 2.59 16 10 N -0.62 -19.99 3.02 -810.05 -2.44 -22.44 16 11 C 0.71 31.97 8.28 179.05 1.48 33.45 16 12 O -0.64 -34.28 16.18 -3.96 -0.06 -34.35 16 13 N -0.72 -33.82 5.51 -482.31 -2.66 -36.48 16 14 C 0.29 16.98 5.43 85.63 0.46 17.44 16 15 C -0.56 -31.44 9.28 25.60 0.24 -31.20 16 16 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 17 C 0.01 0.29 5.46 84.66 0.46 0.75 16 18 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 19 Si 0.99 43.25 29.54 68.60 2.03 45.27 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 23 N -0.43 -14.72 10.54 -180.90 -1.91 -16.63 16 24 C -0.03 -0.90 6.71 40.53 0.27 -0.63 16 25 C 0.57 17.58 8.31 70.15 0.58 18.16 16 26 O -0.52 -16.37 14.90 19.67 0.29 -16.08 16 27 O -0.50 -13.59 13.37 -57.12 -0.76 -14.35 16 28 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 2.10 6.02 -2.38 -0.01 2.09 16 31 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 1.27 7.84 -2.39 -0.02 1.25 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.08 1.75 7.29 -2.39 -0.02 1.73 16 37 H 0.40 16.02 6.80 -92.70 -0.63 15.39 16 38 H -0.02 -1.58 8.14 -2.39 -0.02 -1.60 16 39 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.43 6.78 9.11 -74.06 -0.67 6.10 16 Total: -1.00 -86.75 365.09 -0.75 -87.51 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.20 Total: 20.98 kcal Atomic # 6 Polarization: 32.42 SS G_CDS: 5.97 Total: 38.39 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -6.72 Total: -132.85 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -0.53 Total: -64.78 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -1.29 Total: 5.48 kcal Total: -86.75 -0.75 -87.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600881319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.400 kcal (2) G-P(sol) polarization free energy of solvation -86.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds