Wall clock time and date at job start Tue Mar 31 2020 22:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41258 * 126.70871 * 2 1 4 4 C 1.36819 * 103.84909 * 180.12575 * 3 2 1 5 5 C 1.47515 * 126.94551 * 179.90811 * 4 3 2 6 6 O 1.21587 * 119.99665 * 359.71114 * 5 4 3 7 7 N 1.34774 * 120.00162 * 179.71409 * 5 4 3 8 8 C 1.47419 * 125.64894 * 359.97270 * 7 5 4 9 9 C 1.54908 * 104.83546 * 155.90847 * 8 7 5 10 10 C 1.55155 * 101.58016 * 37.01006 * 9 8 7 11 11 H 1.09000 * 110.72258 * 83.04063 * 10 9 8 12 12 N 1.46500 * 110.72120 * 206.13686 * 10 9 8 13 13 C 1.34779 * 120.00169 * 202.55599 * 12 10 9 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 10 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47367 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47311 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46831 * 299.99623 * 21 19 17 25 25 C 1.47325 * 125.61311 * 180.19998 * 7 5 4 26 26 O 1.34640 * 106.11260 * 359.64922 * 4 3 2 27 27 N 1.20882 * 111.46684 * 0.23815 * 26 4 3 28 28 H 1.09005 * 109.47390 * 270.25473 * 1 2 3 29 29 H 1.08997 * 109.47143 * 30.25079 * 1 2 3 30 30 H 1.08999 * 109.47529 * 150.25521 * 1 2 3 31 31 H 1.08004 * 128.07330 * 0.02562 * 3 2 1 32 32 H 1.09003 * 110.36766 * 37.06616 * 8 7 5 33 33 H 1.09004 * 110.46031 * 274.79242 * 8 7 5 34 34 H 1.08999 * 111.00459 * 278.93831 * 9 8 7 35 35 H 1.08997 * 111.03977 * 155.09588 * 9 8 7 36 36 H 0.96996 * 119.99986 * 22.56196 * 12 10 9 37 37 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 38 38 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 39 39 H 0.96996 * 120.00393 * 180.02562 * 20 19 17 40 40 H 1.08994 * 110.06333 * 61.68068 * 25 7 5 41 41 H 1.08999 * 109.84577 * 300.41205 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3513 1.1324 0.0000 4 6 3.6120 0.6009 -0.0029 5 6 4.8870 1.3429 -0.0061 6 8 4.8828 2.5587 -0.0116 7 7 6.0565 0.6730 -0.0029 8 6 6.2066 -0.7935 0.0042 9 6 7.6069 -1.0518 -0.6059 10 6 8.4227 0.1338 -0.0263 11 1 8.7714 -0.0939 0.9810 12 7 9.5507 0.4636 -0.9010 13 6 10.6203 1.1162 -0.4044 14 8 10.6492 1.4300 0.7667 15 6 11.7804 1.4559 -1.3044 16 16 13.0504 2.3232 -0.3501 17 6 14.2511 2.5914 -1.6115 18 1 14.0652 2.2433 -2.6168 19 6 15.4363 3.2492 -1.3129 20 7 15.6631 3.6731 -0.0876 21 14 16.7089 3.5342 -2.6504 22 1 16.1102 4.3494 -3.7378 23 1 17.8761 4.2520 -2.0782 24 1 17.1522 2.2271 -3.1983 25 6 7.3962 1.2859 -0.0013 26 8 3.4539 -0.7361 0.0035 27 7 2.2847 -1.0433 0.0050 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3634 -0.8922 -0.5098 31 1 2.0678 2.1746 0.0004 32 1 5.4341 -1.2570 -0.6093 33 1 6.1607 -1.1762 1.0238 34 1 7.5729 -1.0075 -1.6945 35 1 8.0109 -2.0061 -0.2682 36 1 9.5277 0.2123 -1.8376 37 1 11.4351 2.0959 -2.1163 38 1 12.2001 0.5389 -1.7180 39 1 16.4912 4.1331 0.1210 40 1 7.5325 1.8844 0.8993 41 1 7.5184 1.9105 -0.8862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687134647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:48 Heat of formation + Delta-G solvation = -1.300820 kcal Electronic energy + Delta-G solvation = -25723.282921 eV Core-core repulsion = 21733.236504 eV Total energy + Delta-G solvation = -3990.046417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.47359 -40.56325 -39.27284 -37.67410 -35.40046 -34.29519 -32.59784 -32.44491 -31.18994 -29.71423 -29.22062 -28.19260 -25.54112 -25.07425 -23.58114 -22.65816 -21.54983 -20.48783 -19.98685 -18.32609 -18.29323 -17.79438 -17.09924 -16.77032 -16.25396 -16.15397 -15.48378 -15.08921 -14.81725 -14.58806 -14.31204 -13.98503 -13.91728 -13.81402 -13.61818 -13.51147 -13.27079 -13.11599 -12.82821 -12.63885 -12.32109 -12.19812 -11.88163 -11.73075 -11.22031 -11.06337 -11.04873 -10.78662 -10.74104 -10.59414 -10.19008 -9.84882 -9.52744 -9.19919 -9.09425 -9.05069 -8.27190 -6.52479 -6.23100 -3.94248 0.35016 1.55898 2.02566 2.54297 2.59442 2.95569 2.99380 3.22688 3.26521 3.29344 3.56941 3.62862 3.80084 4.05056 4.18829 4.21803 4.46714 4.53004 4.64575 4.79265 4.85976 4.94205 4.94685 5.07729 5.10634 5.12151 5.20623 5.21247 5.39512 5.46673 5.53394 5.55127 5.66840 5.68966 5.83140 5.85867 6.09478 6.46604 6.85357 7.40271 7.55390 7.58117 7.65876 8.33297 8.48459 9.22154 10.84233 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.037133 B = 0.001766 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.862562 B =15847.262206 C =16080.733782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.151 4.151 4 C -0.076 4.076 5 C 0.617 3.383 6 O -0.507 6.507 7 N -0.604 5.604 8 C 0.095 3.905 9 C -0.138 4.138 10 C 0.138 3.862 11 H 0.110 0.890 12 N -0.730 5.730 13 C 0.534 3.466 14 O -0.512 6.512 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.095 3.905 26 O 0.117 5.883 27 N -0.347 5.347 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.185 0.815 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.402 0.598 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.220 -11.731 -2.478 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.173 4.173 4 C -0.142 4.142 5 C 0.402 3.598 6 O -0.382 6.382 7 N -0.338 5.338 8 C -0.028 4.028 9 C -0.176 4.176 10 C 0.031 3.969 11 H 0.128 0.872 12 N -0.385 5.385 13 C 0.320 3.680 14 O -0.385 6.385 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.686 4.686 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.028 4.028 26 O 0.044 5.956 27 N -0.050 5.050 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.202 0.798 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.317 -11.703 -0.378 30.643 hybrid contribution 0.678 0.507 -2.667 2.799 sum -27.639 -11.196 -3.046 29.976 Atomic orbital electron populations 1.20226 0.85141 1.04241 1.03831 1.23670 0.99463 0.88220 1.03235 1.22890 0.89858 1.01883 1.02672 1.24137 0.97058 0.83991 1.09017 1.16114 0.80085 0.85682 0.77914 1.90921 1.85494 1.11576 1.50239 1.48337 1.05521 1.08245 1.71706 1.22544 0.98131 0.79693 1.02383 1.23096 0.93679 0.99180 1.01691 1.21850 0.85723 0.92511 0.96767 0.87205 1.45970 1.17852 1.61402 1.13244 1.20405 0.82581 0.76272 0.88700 1.90720 1.79778 1.50996 1.17044 1.23537 0.98903 1.05157 1.02883 1.85413 1.11992 1.71742 1.14065 1.22824 1.04645 1.44088 0.97002 0.90942 1.24985 0.97560 0.94736 0.96225 1.69999 1.25587 1.36209 1.18443 0.86226 0.79889 0.78527 0.80867 1.19932 1.20799 1.19940 1.22647 0.79399 0.96616 1.04134 1.85044 1.21319 1.22122 1.67066 1.73733 0.89402 1.24402 1.17434 0.89764 0.89583 0.90181 0.79816 0.89218 0.89934 0.89598 0.88364 0.76364 0.89073 0.89060 0.92093 0.89668 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.47 36.00 0.38 0.05 16 2 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 3 C -0.15 -1.24 10.91 -38.95 -0.43 -1.66 16 4 C -0.08 -0.73 7.06 -36.32 -0.26 -0.98 16 5 C 0.62 7.01 7.85 -12.48 -0.10 6.92 16 6 O -0.51 -7.44 17.24 5.29 0.09 -7.35 16 7 N -0.60 -5.91 3.33 -171.51 -0.57 -6.49 16 8 C 0.10 0.63 6.21 -2.53 -0.02 0.62 16 9 C -0.14 -0.84 6.71 -24.58 -0.16 -1.00 16 10 C 0.14 1.36 3.27 -66.09 -0.22 1.14 16 11 H 0.11 1.23 7.62 -51.93 -0.40 0.84 16 12 N -0.73 -8.36 5.12 -52.03 -0.27 -8.63 16 13 C 0.53 9.14 7.85 -10.99 -0.09 9.06 16 14 O -0.51 -10.86 15.55 5.56 0.09 -10.78 16 15 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 16 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 17 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.10 1.06 6.65 -2.89 -0.02 1.04 16 26 O 0.12 1.06 8.57 15.56 0.13 1.19 16 27 N -0.35 -3.28 12.04 33.52 0.40 -2.88 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.18 1.20 8.06 -52.48 -0.42 0.77 16 32 H 0.09 0.53 6.28 -51.93 -0.33 0.20 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.44 8.00 -51.93 -0.42 0.03 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 3.41 8.54 -40.82 -0.35 3.06 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -36.33 369.73 -7.39 -43.72 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.25 Total: -0.76 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.09 Total: -0.82 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.30 Total: -43.17 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.31 Total: -16.94 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.33 -7.39 -43.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687134647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.423 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds